1.Comparison of enzyme and DNA analysis in a Tay-Sachs disease carrier screening program.
Han Wook YOO ; Kenneth H ASTRIN ; Robert J DESNICK
Journal of Korean Medical Science 1993;8(1):84-91
Tay-Sachs disease (GM2 gangliosidosis, type 1; TSD) is an autosomal recessive GM2 gangliosidosis resulting from the deficient activity of the lysosomal hydrolase beta-hexosaminidase A (Hex A). With a carrier frequency estimated at 1 in 25, it is a common lysosomal disorder in the Ashkenazi Jewish population. Tay-Sachs disease has provided the prototype for the prevention of severe recessive genetic diseases. Molecular analysis of the Hex A gene (HEXA) of Ashkenazi Jewish individuals affected with Tay-Sachs disease revealed that three common mutations cause the infantile and adult onset forms of the disease; a four base insertion in exon 11, a splice junction mutation in intron 12 and a point mutation in exon 7 (G269S). A study was undertaken to determine whether mutation analysis would be useful in TSD screening programs in identifying carriers and clarifying the status of individuals whose enzyme assays are inconclusive. Ashkenazi Jewish individuals who had been diagnosed as carriers, inconclusives by enzyme assay and non-carriers with low normal enzyme levels in the Mount Sinai Tay-Sachs Disease Prevention Program were examined for the presence of the three mutations using polymerase chain reaction (PCR) and allele specific oligonucleotide (ASO) hybridization. The insertion mutation was present in 29 of 34 carriers and 2 of 36 inconclusive individuals, the splice junction mutation was found in 4 of 34 carriers and the G269S mutation was found in 1 of 34 carriers. Of the 313 non-carrier individuals with normal enzyme activity in the lower normal range, one was positive for the splice junction mutation.(ABSTRACT TRUNCATED AT 250 WORDS)
Base Sequence
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*Clinical Enzyme Tests
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DNA/*analysis
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*Genetic Testing
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*Heterozygote
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Heterozygote Detection
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Humans
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Molecular Sequence Data
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Mutation
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Tay-Sachs Disease/*genetics
2.Prenatal diagnosis of a heterozygote of salt wasting congenital adrenal hyperplasia due to 21-hydroxylase deficiency by genetic linkage analysis.
Bo Hoon OH ; Jai Kyung PARK ; Yong Mook CHOI ; In Myung YANG ; Young Seol KIM ; Young Kil CHOI
Journal of Korean Medical Science 1988;3(2):73-77
For the purpose of prenatal diagnosis of CAH, genetic linkage analysis by HLA genotyping with lymphocytes and cultured amniotic cells were performed in a family at risk in which two consecutive children had been affected with SW CAH. In addition, the response of serum 17-OHP to intravenous ACTH was determined in obligate carrier parents, and 17-OHP concentration of amniotic fluid was also measured at 16 weeks of gestation. As might be expected, the baseline levels of 17-OHP in obligate parents were significantly higher than that of normal control. Although the post stimulation response of 17-OHP to ACTH in the mother (I-2) was significantly higher than that of normal control, the post stimulation levels of 17-OHP were in normal range in the father (I-1). The 17-OHP level (5.7 ng/ml) in the amniotic fluid showed intermediate value compared to Pang's report (normal less than 30 ng/ml, CAH greater than 12.0 ng/ml) suggesting heterozygote of the fetus. Genetic linkage analysis by HLA genotyping with cultured amniotic cells revealed heterozygote in their fetus (II-3) who has received one chromosome No,6 containing HLA haplotype A24, B40, Cw3 (normal allele for 21-OH) from the father and the other chromosome No,6 containing HLA haplotype A2, Bw62, Cw4 (mutant allele for 21-OH D) from the mother. In conclusion, attempts to detect heterozygote for 21-OH deficiency by ACTH stimulation test were partially successful and prenatal diagnosis of CAH by the hormone studies in ammiotic fluid requires reliable values in normal, heterozygotes and patients group, respectively.(ABSTRACT TRUNCATED AT 250 WORDS)
*Adrenal Hyperplasia, Congenital/*diagnosis/enzymology/genetics
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Adult
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Amniocentesis
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Cells, Cultured
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Female
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Fetal Diseases/*diagnosis/enzymology
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HLA Antigens/analysis
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Heterozygote Detection
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Humans
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Pedigree
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Pregnancy
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*Prenatal Diagnosis
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Steroid Hydroxylases
3.De novo mutations in sporadic deletional Duchenne muscular dystrophy (DMD) cases.
Monisha MUKHERJEE ; L S CHATURVEDI ; Sandhya SRIVASTAVA ; R D MITTAL ; Balraj MITTAL
Experimental & Molecular Medicine 2003;35(2):113-117
Dinucleotide repeat polymorphism based genetic analysis is a powerful approach to gain insight into rare genetic events like germline mosaicism and de novo mutations. The loss of heterozygosity of polymorphic dinucleotide loci at "deletional hotspot" of dystrophin gene can provide direct evidence of carrier status in female relatives of affected DMD patients with overlapped exonic deletions. We have used 4 STR loci of the central deletional hotspot of the dystrophin gene for genetic analysis in sporadic unrelated DMD families. Twenty-nine mothers of sporadic deletional cases were analysed and their carrier status was determined. Eighteen of them showed heterozygosity in the deleted loci suggesting the occurrence of de novo mutations. In 9 cases, the carrier status was indeterminate while 2 showed germline mosaicism. Our observations reiterated the importance of STR analysis in determining the status of mothers of sporadic deletional DMD cases in order to provide proper genetic counselling.
DNA Mutational Analysis
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Dystrophin/*genetics
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Female
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Germ-Line Mutation/genetics
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Haplotypes/genetics
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Heterozygote Detection
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Human
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Male
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Mosaicism/genetics
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Muscular Dystrophy, Duchenne/*genetics
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Mutation/*genetics
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Pedigree
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Sequence Deletion/genetics
4.The prevalence study on restriction fragment length polymorphism analysis for the detection of hemophilia A carrier.
Kyung Soon SONG ; Chang Hoon LEE ; Chong Sin CHUNG ; Kook LEE ; Young Ho YANG ; Kir Young KIM
Yonsei Medical Journal 1993;34(3):239-242
We have analyzed two (BclI and XbaI) intragenic restriction fragment length polymorphisms (RFLPs) and St14 (DXS52) variable number of tandem repeats (VNTR) by rapid PCR method in 97 unrelated normal subjects. The incidences for positive Bc1I and XbaI polymorphic sites in the Koreans were 81% and 72%, respectively, which were higher than other ethnic groups but similar to that reported in the Chinese or Japanese, giving the heterozygosity rate of 0.32 and 0.40, respectively. The amplified allele size was 880 bp with no other polymorphism in the analysis of St14 (DXS52) VNTR. This finding should be taken into account in the planning of a prenatal diagnosis program for ethnic Koreans
Base Sequence
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Gene Frequency
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Hemophilia A/epidemiology/*genetics
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*Heterozygote Detection/methods
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Human
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Korea/epidemiology
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Molecular Sequence Data
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Polymerase Chain Reaction
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Polymorphism, Restriction Fragment Length
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Prevalence
5.Quantitative Analysis of SMN1 Gene and Estimation of SMN1 Deletion Carrier Frequency in Korean Population based on Real-Time PCR.
Tae Mi LEE ; Sang Wun KIM ; Kwang Soo LEE ; Hyun Seok JIN ; Soo Kyung KOO ; Inho JO ; Seongman KANG ; Sung Chul JUNG
Journal of Korean Medical Science 2004;19(6):870-873
Spinal muscular atrophy (SMA) is an autosomal recessive disorder, caused by homozygous absence of the survival motor neuron gene (SMN1) in approximately 94% of patients. Since most carriers have only one SMN1 gene copy, several SMN1 quantitative analyses have been used for the SMA carrier detection. We developed a reliable quantitative real-time PCR with SYBR Green I dye and studied 13 patients with SMA and their 24 parents, as well as 326 healthy normal individuals. The copy number of the SMN1 gene was determined by the comparative threshold cycle (Ct) method and albumin was used as a reference gene. The homozygous SMN1 deletion ratio of patients was 0.00 and the hemizygous SMN1 deletion ratio of parents ranged from 0.39 to 0.59. The delta delta Ct ratios of 7 persons among 326 normal individuals were within the carrier range, 0.41-0.57. According to these data, we estimated the carrier and disease prevalence of SMA at 1/47 and 1/8,496 in Korean population, respectively. These data indicated that there would be no much difference in disease prevalence of SMA compared with western countries. Since the prevalence of SMA is higher than other autosomal recessive disorders, the carrier detection method using real-time PCR could be a useful tool for genetic counseling.
Adult
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Aged
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Aged, 80 and over
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DNA Mutational Analysis/*methods
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Female
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Genetic Predisposition to Disease/epidemiology
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Genetic Screening/*methods
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Heterozygote
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Heterozygote Detection/methods
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Humans
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Korea/epidemiology
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Male
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Middle Aged
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Muscular Atrophy, Spinal/*epidemiology/genetics/*metabolism
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Nerve Tissue Proteins/*genetics
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Polymorphism, Genetic
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*Quantitative Trait, Heritable
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Reverse Transcriptase Polymerase Chain Reaction/*methods
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Risk Assessment/*methods
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Risk Factors