1.Phylogeography of the current rabies viruses in Indonesia.
I Nyoman DIBIA ; Bambang SUMIARTO ; Heru SUSETYA ; Anak Agung Gde PUTRA ; Helen SCOTT-ORR ; Gusti Ngurah MAHARDIKA
Journal of Veterinary Science 2015;16(4):459-466
Rabies is a major fatal zoonotic disease in Indonesia. This study was conducted to determine the recent dynamics of rabies virus (RABV) in various areas and animal species throughout Indonesia. A total of 27 brain samples collected from rabid animals of various species in Bali, Sumatra, Kalimantan, Sulawesi, Java, and Flores in 2008 to 2010 were investigated. The cDNA of the nucleoprotein gene from each sample was generated and amplified by one-step reverse transcription-PCR, after which the products were sequenced and analyzed. The symmetric substitution model of a Bayesian stochastic search variable selection extension of the discrete phylogeographic model of the social network was applied in BEAST ver. 1.7.5 software. The spatial dispersal was visualized in Cartographica using Spatial Phylogenetic Reconstruction of Evolutionary Dynamics. We demonstrated inter-island introduction and reintroduction, and dog was found to be the only source of infection of other animals. Ancestors of Indonesian RABVs originated in Java and its descendants were transmitted to Kalimantan, then further to Sumatra, Flores, and Bali. The Flores descendent was subsequently transmitted to Sulawesi and back to Kalimantan. The viruses found in various animal species were transmitted by the dog.
Animals
;
Brain
;
DNA, Complementary
;
Dogs
;
Indonesia*
;
Nucleoproteins
;
Phylogeography*
;
Rabies virus*
;
Rabies*
;
Zoonoses
2. Evaluation of zoonotic potency of Escherichia coli O157: H7 through arbitrarily primed PCR methods
I. Wayan SUARDANA ; Dyah Ayu WIDIASIH ; I. Gusti Ngurah Kade MAHARDIKA ; Komang Januartha Putra PINATIH ; Budi Setiadi DARYONO
Asian Pacific Journal of Tropical Biomedicine 2015;5(11):915-920
Objective: To evaluate the zoonotic potency of Escherichia coli O157:H7 through arbitrarily primed-PCR (AP-PCR) methods as one of the DNA fingerprinting methods. Methods: A total of 14 isolates consisted of 11 isolates originated from human feces with renal failure symptoms, 2 isolates originated from cattle feces, and 1 control isolate were used in this study. DNA of each isolate was extracted, and their profiles were studied by using AP-PCR method with M13 F and M13 R arbitrary primers. Results: The results founded that all of 14 isolates had similarity range from 54.6% to 88.5%. Isolates KL-106(3) and KL-55(6) originated from humans showed the degree of similarity with isolates SM-25(1) and SM-7(1) originated from cattle as high as 85% and 77%, respectively. Conclusions: The high degree of similarity between isolates originated from cattle and human indicated the high potency of zoonoses. The results also concluded AP-PCR method as a briefly fingerprinting method in order to trace the epidemiological of E. coli O157:H7.