1.Mechanism of hsa-miRNA124-3p regulating the proliferation and migration of human lung cancer cell line NCI-H460
Ye WANG ; Wang XIE ; Jie ZHANG ; Jieying SHENG ; Zhongliang GUO
Journal of Shanghai Jiaotong University(Medical Science) 2017;37(8):1051-1058
Objective · To study the regulation of hsa-miRNA124-3p on the proliferation and migration of human lung cancer NCI-H460 cells and its mechanism. Methods · Four pairs of lung cancer and para-carcinoma tissues were harvested in clinical and measured for hsa-miRNA124-3p and Krüppellike factor 4 (KLF4) levels. The theoretical binding site of hsa-miRNA124-3p in 3'-UTR of KLF4 was predicted by bioinformatics, and validated by luciferase report assay. NCI-H460 cells were transfected with pshRNA-Sponge-miRNA124 or pshRNA-KLF4, and 48 hours later, the proliferation of NCI-H460 cells after genetic intervention was assayed by the MTT method, and cell migration ability was observed by streak method. Results · For all four pairs of samples tested, hsa-miRNA124-3p was higher in the cancer tissues than in the adjacent tissue (P<0.01), and KLF4 protein was lower in the cancer tissues than in the adjacent tissue (P<0.01). The bioinformatic analysis showed there is a theoretical binding site (5'-UGCCUUAA-3') of hsa-miRNA124-3p in 3'-UTR of KLF4. Luciferase activity assay showed that hsa-miRNA124-3p could bind to the 3'-UTR region of KLF4 gene and negatively regulate the expression of protein. The proliferation of NC-H460 cells was suppressed by transfection with pshRNA-Sponge-miRNA12472 h after transfection (P<0.05 ). Compared with the control group, the proliferation activity of pshRNA-KLF4 transfection group was further enhanced (P<0.05) There was no significant difference in the proliferation of pshRNA-Sponge-miRNA124 and pshRNA-KLF4 cotransfection group and the control group (P>0.05). The data of cell migration assay showed that the changes of cell migration ability were the same as proliferation activity of the cells in groups 72 h after transfection. Conclusion · Hsa-miRNA124-3p increases the proliferation and migration in NCI-H460 cells via suppressing the expression of KLF4, and reducing the content of miRNA124-3p in NC-H460 cells can inhibit cell proliferation and migration via upregulating KLF4 expression.
2.Normal Changes in Brain During Childhood-Study of the Diffusion Tensor Imaging
Xuemei GUO ; Jiangxi XIAO ; Sheng XIE ; Xiaoying WANG ; Xuexiang JIANG
Journal of Practical Radiology 2001;0(10):-
Objective To study the normal changes in brain during childhood by analyzing the diffusion characters of different regions and different age phases with diffusion tensor imaging (DTI). Methods DTI was performed in 63 children (age range, 2 days to 9 years) without brain abnormalities and the data measured in ADC maps were analyzed statistically. Results (1) There were significant differences in ADC values among some different regions of brain tissue; (2) In babyhood, the ADC values in gray matters decreased faster than in white matters; (3) The ADC values decreased with the increasing of age , and show negatively exponentially correlation with age. Conclusion DTI shows the changes of brain tissue composition in vivo, with which normal changes in brain during childhood can be evaluated.
3.Primary Study of the White Matter in Normal Children with Color Tensor Map
Jiangxi XIAO ; Xuemei GUO ; Sheng XIE ; Xiaoying WANG ; Xuexiang JIANG
Journal of Practical Radiology 2000;0(12):-
Objective To study findings of the white matter of nomal children on color tensor map and evaluate the diffusion tensor imaging in the assessing development of the brain. Methods DTI was obtained in 89 normal children aging from 2 days to 18 years.Their color tensor maps were generated and analyzed.Results Their color tensor maps revealed different findings due to aging;with the increase of the age,the fiber tracts showed were more and well defined.Conclusion The color tensor map is superior to the routine MR in assessing the development of the white matter.
4.Diffusion tensor MR imaging in pediatric patients with periventricular leukomalacia
Sheng XIE ; Xuemei GUO ; Aiguo CUI ; Jiangxi XIAO ; Xuexiang JIANG
Chinese Journal of Radiology 2001;0(03):-
Objective To compare pediatric patients with periventricular leukomalacia (PVL) with normal children by using diffusion tensor MR imaging. Methods Diffusion tensor images were obtained in 15 pediatric patients with PVL and 15 age-matched normal children. Regions of interest were drawn to measure the fractional anisotropy (FA) in bilateral posterior limb of internal capsule, bilateral optic radiation, genu of corpus callosum, and splenium of corpus callosum. The values of PVL patients and normal children were compared using non-dependent samples T-test. Results The FA values of regions of interest prescribed were significantly lower in PVL patients than in normal children(P
5.Preliminary study of normal changes in brain white matter during childhood with diffusion tensor imaging
Jiangxi XIAO ; Xuemei GUO ; Sheng XIE ; Xiaoying WANG ; Xuexiang JIANG
Chinese Journal of Radiology 2000;0(12):-
Objective To study the normal changes in brain white matter during childhood by analyzing the anisotropy of different regions and different age groups with diffusion tensor imaging (DTI). Methods DTI was performed in 89 children (age range from 2 days to 18 years) without brain abnormalities, and the data measured in fractional anisotropy(FA) maps were analyzed statistically. Children less than 6 months were ranged to group 1, 6-12 months to group 2, 1-3 years to group 3, 3-5 years to group 4, 5-8 years to group 5, 8-12 years to group 6, 12-18 years to group 7. Results (1) There were significant differences in anisotropy (FA values) among different regions of white matter in brain In group 7, the FA value of corpus callosum was 0.826?0.039, middle cerebellar peduncle 0.678?0.043, frontal white matter 0.489?0.033. (2) The anisotropy among different age group was statistically different, P
6.In silico cloning and bioinformatics analysis of an AP2/EFR family gene from Arnebia euchroma.
Teng XIE ; Sheng WANG ; Liang-Yun ZHOU ; Jin-Fu TANG ; Lan-Ping GUO
China Journal of Chinese Materia Medica 2014;39(12):2251-2257
A cDNA sequence of Arnebia euchroma AP2/ERF named AeAP2/ERF was cloned by in silico cloning in this study, using ACX71873 sequence from Lithospermum erythrorhizon as the probe sequence. Some characters of the AP2/ERF gene and encoded protein sequences were predicted and analyzed by the bioinformatics methods, including general physical and chemical properties, hydrophobieity, signal peptide, secondary structure, localization sites in cells. Results showed that the 876 bp long gene included a 1 077 bp ORF and encoding 205 amino acid. The AeAP2/ERF protein had no signal peptide, it was a hydrophilic proteins located in nucleus. The function of the AP2/ERF protein was mainly involved with metabolism controlling and signal transduction.
Amino Acid Sequence
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Base Sequence
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Boraginaceae
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classification
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genetics
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Cloning, Molecular
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Computational Biology
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Computer Simulation
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Hydrophobic and Hydrophilic Interactions
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Molecular Sequence Data
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Phylogeny
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Plant Proteins
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genetics
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Protein Structure, Secondary
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Protein Structure, Tertiary
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Transcription Factors
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chemistry
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genetics
7.Overexpression and RNAi vectors built for key secondary metabolic pathway genes PAL, HMGR, PGT of Arnebia euchroma.
Teng XIE ; Yu-Zhong LIU ; Sheng WANG ; Tan LIU ; Li-Ping KANG ; Lan-Ping GUO
China Journal of Chinese Materia Medica 2014;39(23):4538-4543
Arnebia euchroma is the main source for medicinal herb Zicao. and its most important component shikonin compounds have high medicinal and industrial value. This research is aimed to build overexpression vectors and RNAi vectors for key secondary metabolism genes of A. euchroma, and bulid platform for constructions of related transgenic lines using GATEWAY technology. To build genetic material based genetic research platform is to provide a great convenience for digging and functional verification of the genes on secondary metabolic pathway, and also to fill the gaps in transgenic research of A. euchroma. This study is also important for the cultivation of shikonin high-yielding strains of A. euchroma.
Boraginaceae
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genetics
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metabolism
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Genetic Vectors
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genetics
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metabolism
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Plant Proteins
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genetics
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metabolism
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RNA Interference
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Secondary Metabolism
8.Transcriptome-based bioinformatics analysis of Arnebia euchroma ERF transcription factor family.
Teng XIE ; Sheng WANG ; Lei HUANG ; Xue WANG ; L-ping KANG ; Lan-ping GUO
China Journal of Chinese Materia Medica 2014;39(24):4732-4739
Twenty-seven ERF transcription factor family genes were isolated from Arnebia euchroma, with an average size of 1,010 bp, each gene encoded a 212 amino acids on average. The gene structure and expression of physicochemical properties, subcellular localization, signal peptides, senior structural domains and conservative forecasting, and analysis of A. euchroma were studied comparing with ERF gene gi261363612 of Lithospermum erythrorhizon, and phylogenetic analysis of A. euchroma ERF family was carried out. The results showed the existence of three conserved domains in this family, the senior structure based on random coil and it clustered into CBF/DREB and ERF subfamilies.
Amino Acid Motifs
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Amino Acid Sequence
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Boraginaceae
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genetics
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Cloning, Molecular
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Computational Biology
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Genome, Plant
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genetics
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High-Throughput Nucleotide Sequencing
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Medicine, Chinese Traditional
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Molecular Sequence Data
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Multigene Family
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Phylogeny
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Plant Proteins
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chemistry
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genetics
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Plants, Medicinal
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Protein Structure, Secondary
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Protein Structure, Tertiary
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Sequence Analysis, DNA
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Transcription Factors
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chemistry
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genetics
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Transcriptome
9.MRI findings in Leigh syndrome with SURF-1 gene 604G→C mutations
Li GUO ; Sheng XIE ; Jiangxi XIAO ; Zhaoyue QI ; Yanling YANG ; Xuexiang JIANG
Chinese Journal of Radiology 2008;42(12):1246-1248
Objective To determine the MR phenotype of Leigh syndrome (IS) with SURF-1 gene mutation.Methods The cranial MR examination of eight patients with the diagnosis of Leigh syndrome associated with SURF-1 gene 604G→C mutations were reviewed retrospectively.Comparison was made with typical LS patients' MRI.Observation was made regarding lesions in basal ganglia,subthalamic nuclei,substantia nigra,and dentate nuclei,involvement of white matter,and brain atrophy.Results The MR findings of LS in the study included the following:3 cases exhibited involvement of brain stem and subthalamic nuclei,2 of these 3 cases also had basal ganglia abnormalities.3 cases showed abnormality in the white matter without any involvement of the deep nuclei.Cerebral atrophy was observed in all cases in the group,and was the only finding in two cases.Conclusion The imaging findings in LS with SURF-1 604G→C gene mutation were variable.