1.Screening and cloning of genes related to varicose great saphenous vein accompanying with primary deep vein valve insufficiency.
Shenming WANG ; Henghui YIN ; Jinsong WANG ; Zuojun HU ; Xueling HUANG
Chinese Journal of Surgery 2002;40(12):909-911
OBJECTIVETo screen the genes related to the occurrence and development of varicosis of the great saphenous vein in the patients with primary deep vein valve insufficiency.
METHODSUsing mRNA fluorescent differential display reverse transcriptive polymerase chain reaction (FDD-RTPCR), different genes expressed in the varicose great saphenous veins in patients with primary deep vein valve insufficiency and corresponding normal human tissues were compared. Differentially expressed cDNA fragments confirmed by Northern blot were compared and then cloned into the pGEM-Teasy vector. Positive clones were selected and sequenced. All the sequences were put into GenBank and analyzed by BLASTN software to search for their genetic origins.
RESULTSAltogether 37 different cDNA fragments were obtained and 30 of which were confirmed by Northern blot. Analysis of the sequences by BLASTN software showed that C(610) fragment (NO. 18 cDNA clone) shared 96% homology with the mRNA sequence of the human Mckusick-Kaufman syndrome gene (MKKS gene).
CONCLUSIONC(610) fragment is highly homologous with the mRNA sequence of the human MKKS gene and is closely related to the development of varicosis of the great saphenous vein in patients with primary deep vein valve insufficiency.
Base Sequence ; Blotting, Northern ; Cloning, Molecular ; Group II Chaperonins ; Humans ; Lower Extremity ; blood supply ; Molecular Chaperones ; genetics ; Molecular Sequence Data ; RNA, Messenger ; genetics ; Reverse Transcriptase Polymerase Chain Reaction ; Saphenous Vein ; Sequence Homology, Nucleic Acid ; Varicose Veins ; etiology ; genetics ; Venous Insufficiency ; complications ; genetics
2.Identification of 10 Candidate Biomarkers Distinguishing Tuberculous and Malignant Pleural Fluid by Proteomic Methods.
Chang Youl LEE ; Ji Young HONG ; Myung Goo LEE ; In Bum SUH
Yonsei Medical Journal 2017;58(6):1144-1151
PURPOSE: Pleural effusion, an accumulation of fluid in the pleural space, usually occurs in patients when the rate of fluid formation exceeds the rate of fluid removal. The differential diagnosis of tuberculous pleurisy and malignant pleural effusion is a difficult task in high tuberculous prevalence areas. The aim of the present study was to identify novel biomarkers for the diagnosis of pleural fluid using proteomics technology. MATERIALS AND METHODS: We used samples from five patients with transudative pleural effusions for internal standard, five patients with tuberculous pleurisy, and the same numbers of patients having malignant effusions were enrolled in the study. We analyzed the proteins in pleural fluid from patients using a technique that combined two-dimensional liquid-phase electrophoresis and matrix assisted laser desorption/ionization-time of flight-mass spectrometry. RESULTS: We identified a total of 10 proteins with statistical significance. Among 10 proteins, trasthyretin, haptoglobin, metastasis-associated protein 1, t-complex protein 1, and fibroblast growth factor-binding protein 1 were related with malignant pleural effusions and human ceruloplasmin, lysozyme precursor, gelsolin, clusterin C complement lysis inhibitor, and peroxirexdoxin 3 were expressed several times or more in tuberculous pleural effusions. CONCLUSION: Highly expressed proteins in malignant pleural effusion were associated with carcinogenesis and cell growth, and proteins associated with tuberculous pleural effusion played a role in the response to inflammation and fibrosis. These findings will aid in the development of novel diagnostic tools for tuberculous pleurisy and malignant pleural effusion of lung cancer.
Biomarkers*
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Carcinogenesis
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Ceruloplasmin
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Chaperonin Containing TCP-1
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Clusterin
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Diagnosis
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Diagnosis, Differential
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Electrophoresis
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Fibroblasts
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Fibrosis
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Gelsolin
;
Haptoglobins
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Humans
;
Inflammation
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Lung Neoplasms
;
Methods*
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Muramidase
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Pleural Effusion
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Pleural Effusion, Malignant
;
Prevalence
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Proteomics
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Spectrum Analysis
;
Tuberculosis
;
Tuberculosis, Pleural
3.Flexible interwoven termini determine the thermal stability of thermosomes.
Kai ZHANG ; Li WANG ; Yanxin LIU ; Kwok-Yan CHAN ; Xiaoyun PANG ; Klaus SCHULTEN ; Zhiyang DONG ; Fei SUN
Protein & Cell 2013;4(6):432-444
Group II chaperonins, which assemble as double-ring complexes, assist in the refolding of nascent peptides or denatured proteins in an ATP-dependent manner. The molecular mechanism of group II chaperonin assembly and thermal stability is yet to be elucidated. Here, we selected the group II chaperonins (cpn-α and cpn-β), also called thermosomes, from Acidianus tengchongensis and investigated their assembly and thermal stability. We found that the binding of ATP or its analogs contributed to the successful assembly of thermosomes and enhanced their thermal stabilities. Cpn-β is more thermally stable than cpn-α, while the thermal stability of the hetero thermosome cpn-αβ is intermediate. Cryo-electron microscopy reconstructions of cpn-α and cpn-β revealed the interwoven densities of their non-conserved flexible N/C-termini around the equatorial planes. The deletion or swapping of their termini and pH-dependent thermal stability assays revealed the key role of the termini electrostatic interactions in the assembly and thermal stability of the thermosomes.
Acidianus
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metabolism
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Adenosine Triphosphate
;
metabolism
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Amino Acid Sequence
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Cryoelectron Microscopy
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Hydrogen-Ion Concentration
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Molecular Sequence Data
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Mutation
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Nucleotides
;
metabolism
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Protein Binding
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Protein Folding
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Protein Stability
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Protein Structure, Quaternary
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Sequence Alignment
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Static Electricity
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Temperature
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Thermosomes
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chemistry
;
genetics
;
metabolism
4.Reduced semen quality in patients with testicular cancer seminoma is associated with alterations in the expression of sperm proteins.
Tânia R DIAS ; Ashok AGARWAL ; Peter N PUSHPARAJ ; Gulfam AHMAD ; Rakesh SHARMA
Asian Journal of Andrology 2020;22(1):88-93
Testicular cancer seminoma is one of the most common types of cancer among men of reproductive age. Patients with this condition usually present reduced semen quality, even before initiating cancer therapy. However, the underlying mechanisms by which testicular cancer seminoma affects male fertility are largely unknown. The aim of this study was to investigate alterations in the sperm proteome of men with seminoma undergoing sperm banking before starting cancer therapy, in comparison to healthy proven fertile men (control group). A routine semen analysis was conducted before cryopreservation of the samples (n = 15 per group). Men with seminoma showed a decrease in sperm motility (P = 0.019), total motile count (P = 0.001), concentration (P = 0.003), and total sperm count (P = 0.001). Quantitative proteomic analysis identified 393 differentially expressed proteins between the study groups. Ten proteins involved in spermatogenesis, sperm function, binding of sperm to the oocyte, and fertilization were selected for validation by western blot. We confirmed the underexpression of heat shock-related 70 kDa protein 2 (P = 0.041), ubiquinol-cytochrome C reductase core protein 2 (P = 0.026), and testis-specific sodium/potassium-transporting ATPase subunit alpha-4 (P = 0.016), as well as the overexpression of angiotensin I converting enzyme (P = 0.005) in the seminoma group. The altered expression levels of these proteins are associated with spermatogenesis dysfunction, reduced sperm kinematics and motility, failure in capacitation and fertilization. The findings of this study may explain the decrease in the fertilizing ability of men with seminoma before starting cancer therapy.
Acrosin/metabolism*
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Adult
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Case-Control Studies
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Chaperonin Containing TCP-1/metabolism*
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Electron Transport Complex III/metabolism*
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HSP70 Heat-Shock Proteins/metabolism*
;
Humans
;
Male
;
Peptidyl-Dipeptidase A/metabolism*
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Proteasome Endopeptidase Complex/metabolism*
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Proteomics
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Semen Analysis
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Seminoma/metabolism*
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Sodium-Potassium-Exchanging ATPase/metabolism*
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Sperm Count
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Sperm Motility
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Spermatozoa/metabolism*
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Testicular Neoplasms/metabolism*