1.A CRISPR/dCpf1-based transcriptional repression system for Gluconobacter oxydans.
Yutong YANG ; Ning LI ; Jingwen ZHOU ; Jian CHEN
Chinese Journal of Biotechnology 2022;38(2):719-736
Gluconobacter oxydans are widely used in industrial due to its ability of oxidizing carbohydrate rapidly. However, the limited gene manipulation methods and less of efficient gene editing tools impose restrictions on its application in industrial production. In recent years, the clustered regularly interspaced short palindromic repeats (CRISPR) system has been widely used in genome editing and transcriptional regulation which improves the efficiency of genome editing greatly. Here we constructed a CRISPR/dCpf1-mediated gene transcriptional repression system, the expression of a nuclease inactivation Cpf1 protein (dCpf1) in Gluconobacter oxydans together with a 19 nt direct repeats showed effective repression in gene transcription. This system in single gene repression had strong effect and the relative repression level had been increased to 97.9%. While it could be applied in multiplex gene repression which showed strong repression ability at the same time. Furthermore, this system was used in the metabolic pathway of L-sorbose and the regulatory of respiratory chain. The development of CRISPR transcriptional repression system effectively covered the shortage of current gene regulation methods in G. oxydans and provided an efficient gene manipulation tool for metabolic engineering modification in G. oxydans.
CRISPR-Cas Systems/genetics*
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Clustered Regularly Interspaced Short Palindromic Repeats/genetics*
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Gene Editing
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Gene Expression
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Gluconobacter oxydans/genetics*
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Metabolic Engineering
2.Progress in metabolic engineering of microbial production of 1,3-dihydroxyacetone.
Lihui SUN ; Zhongce HU ; Yuguo ZHENG ; Yinchu SHEN
Chinese Journal of Biotechnology 2010;26(9):1218-1224
1,3-Dihydroxyacetone is widely used in cosmetics, medicines and food products. We reviewed the recent progress in metabolic pathways, key enzymes, as well as metabolic engineering for microbial production of 1,3-dihydroxyacetone. We addressed the research trend to increase yield of 1,3-dihydroxyacetone by improving the activity of glycerol dehydrogenase with genetic engineering, and regulating of fermentation process based on metabolic characteristic of the strain.
Dihydroxyacetone
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biosynthesis
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Fermentation
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Genetic Engineering
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methods
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Gluconobacter oxydans
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genetics
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metabolism
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Industrial Microbiology
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methods
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Metabolic Engineering
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methods
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Sugar Alcohol Dehydrogenases
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metabolism
3.Synthesis of pyrroloquinoline quinone by recombinant Gluconobacter oxydans.
Runle YE ; Feng LI ; Fan DING ; Zhenhui ZHAO ; Sheng CHEN ; Jianfeng YUAN
Chinese Journal of Biotechnology 2020;36(6):1138-1149
Pyrroloquinoline quinone (PQQ), an important redox enzyme cofactor, has many physiological and biochemical functions, and is widely used in food, medicine, health and agriculture industry. In this study, PQQ production by recombinant Gluconobacter oxydans was investigated. First, to reduce the by-product of acetic acid, the recombinant strain G. oxydans T1 was constructed, in which the pyruvate decarboxylase (GOX1081) was knocked out. Then the pqqABCDE gene cluster and tldD gene were fused under the control of endogenous constitutive promoter P0169, to generate the recombinant strain G. oxydans T2. Finally, the medium composition and fermentation conditions were optimized. The biomass of G. oxydans T1 and G. oxydans T2 were increased by 43.02% and 38.76% respectively, and the PQQ production was 4.82 and 20.5 times higher than that of the wild strain, respectively. Furthermore, the carbon sources and culture conditions of G. oxydans T2 were optimized, resulting in a final PQQ yield of (51.32±0.899 7 mg/L), 345.6 times higher than that of the wild strain. In all, the biomass of G. oxydans and the yield of PQQ can be effectively increased by genetic engineering.
Fermentation
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Gene Knockout Techniques
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Gluconobacter oxydans
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genetics
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metabolism
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Industrial Microbiology
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methods
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Multigene Family
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genetics
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Organisms, Genetically Modified
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PQQ Cofactor
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biosynthesis
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genetics
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Promoter Regions, Genetic
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genetics
4.Purification of L-sorbose/L-sorbosne dehydrogenase from Ketogulonigenium vulgare and construction and selection of genomic library.
Li XIE ; Duo ZHANG ; Yan-Feng DOU ; Li-Ping ZHANG ; Bao-Hua ZHAO
Chinese Journal of Biotechnology 2007;23(5):891-895
L-sorbose/L-sorbosone dehydrogenase from Ketogulonigenium vulgare S2 can transform L-sorbose to 2-KLG, which is widely used in production of Vitamin C. In order to obtain the engineering strain producing L-sorbose/L-sorbosone dehydrogenase and simplify the fermentation technology, firstly, this enzyme was purified by the methods of ammonium sulfate precipitation, DEAE Sepharose Fast Flow and Q Sepharose High Performance. Then, the purified L-sorbose/L-sorbosone dehydrogenase was injected to rabbit to obtain antibody. Next, the genomic library of Ketogulonigenium vulgare S2 was constructed by inserting the restriction fragments of chromatosomal DNA digested with Sau3A I into cosmid pKC505 vector digested by Hpa I and Pst I, which were packed with lamda phage package protein and transferred into E. coli DH5alpha in vitro. Finally, the positive strain K719# was selected from more than 12,000 clones via Dot-ELISA. Through the test of SDS-PAGE and thin layer chromatography, the results showed that the engineering strain K719# had the same biological activity as Ketogulonigenium vulgare S2 after adding coenzyme PQQ.
Carbohydrate Dehydrogenases
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genetics
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isolation & purification
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metabolism
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Cloning, Molecular
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Escherichia coli
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genetics
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metabolism
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Genomic Library
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Gluconobacter oxydans
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enzymology
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genetics
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growth & development
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Sorbose
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metabolism
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Sugar Acids
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metabolism
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Transformation, Bacterial