1.Triple marker screening for fetal chromosomal abnormalities in Korean women of advanced maternal age.
Sei Kwang KIM ; Sang Wook BAI ; Jae Eun CHUNG ; Young Nae JUNG ; Ki Hyun PARK ; Dong Jae CHO ; Jae Wook KIM ; Young Ho YANG ; Chan Ho SONG
Yonsei Medical Journal 2001;42(2):199-203
The purpose of this article is to assess the value of maternal serum triple marker screening of alpha-fetoprotein (AFP), human chorionic gonadotropin (hCG), and unconjugated estriol (uE3) for the prenatal diagnosis of fetal chromosomal abnormalities in Korean women of advanced maternal age. Maternal sera were collected from 458 pregnant Korean women aged 35 between 15 and 20 weeks gestation before amniocentesis. A patient- specific second trimester risk for fetal Down's syndrome was calculated using the median values for AFP, hCG, uE3 and maternal age. Twelve fetal chromosomal abnormalities were identified. These included six cases of trisomy 21, one case of 46,XY/47,XY,+21, two cases of trisomy 18, one case of trisomy 13, and two cases of 45, X. A cutoff level of 1:200 detected 85.7% (6/7) of the cases of Down's syndrome and 20% (1/5) of the other aneuploidies, with a 27.3% false positive rate. However, a cutoff level of 1:270 did not result in any gains in detecting Down's syndrome or other aneuploidies at the expense of a false positive rate of 34.3%. Second trimester triple marker testing is an effective screening tool for detecting fetal Down's syndrome in Korean women > or = 35 years old. However, it is not an effective screening tool for non-Down's chromosomal abnormalities.
Adult
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Chromosome Abnormalities/genetics*
;
Female
;
Fetus/physiology*
;
Genetic Markers
;
Genetic Screening*
;
Human
;
Maternal Age 35 and over*
;
Pregnancy
2.Mutations in a Large Pedigree with Y-STR Genetic Markers.
Shan PENG ; Chao LIU ; Ying WANG ; Yue LI ; Chu-chu ZHANG ; Li HONG ; Xue-ling OU ; Hong-yu SUN
Journal of Forensic Medicine 2015;31(2):109-122
OBJECTIVE:
To explore the mutation of Y-STR loci in meiotic allelic transmission in a large pedigree.
METHODS:
The oral swabs of 163 male individuals were collected from a Lin pedigree. Twenty-two Y-STR genetic markers were typed with AGCU Y24 fluorescent detection kit (AGCU Y24 system), which also contained 16 Y-STR markers included in Yfiler multiple amplification kit (Yfiler system). The genotyping results of Y-STR loci were compared between each two males in the pedigree.
RESULTS:
There were 20 and 30 kinds of haplotypes obtained with Yfiler and AGCU Y24 systems in 163 male individuals from the Lin pedigree, respectively. The rates referred to haplotype differences (RRHD) of these two typing systems between male pairs were 0.910 5 and 0.922 7, respectively. The average number of marker differences were 6.582 1 and 9.824 8, respectively. The RRHD increased along with the incidents of meiosis.
CONCLUSION
Y-STR mutation leads to different Y-STR haplotypes among the male members in a paternal pedigree and the rate of difference increases along with the incidents of meiosis.
Alleles
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Chromosomes, Human, Y/genetics*
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DNA Fingerprinting
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Genetic Linkage
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Genetic Markers/physiology*
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Genotype
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Haplotypes
;
Humans
;
Male
;
Mutation/genetics*
;
Pedigree
3.SCoT differential expression of cold resistance related genes in Dendrobium officinale under low temperature stress.
Dong-Bin LI ; Yan-Hui GAO ; Jin-Ping SI
China Journal of Chinese Materia Medica 2013;38(4):511-515
In order to study the molecule mechanism of the differential expression in Dendrobium officinale under low temperature, the high cold resistance germplasms were used for constructing the RNA pools. SCoT markers were used to analyze the different cDNA pools transcribed from the RNA pools. 11 transcripts derived fragments from 500 cDNA amplified bands were amplified by 64 primers, and were sorted out, cloned, sequenced and analyzed. The results showed that cDNA pools with SCoT markers could be used for differential display in D. officinale under low temperature stress. Sequence analysis indicated that the transcripts derived fragments were significantly homologous in nucleotide sequence with membrane-associated proteins, osmotic regulation protein, CBF transcriptional factor, resistance protein. One left gene segments functions were still unknown, which may be related to the cold resistant gene expression in D. officinale.
Breeding
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Cold Temperature
;
adverse effects
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Dendrobium
;
genetics
;
physiology
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Gene Expression Regulation, Plant
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Genetic Markers
;
genetics
;
Stress, Physiological
;
genetics
4.Molecular Imaging in the Age of Genomic Medicine.
Genomics & Informatics 2007;5(2):46-55
The convergence of molecular and genetic disciplines with non-invasive imaging technologies has provided an opportunity for earlier detection of disease processes which begin with molecular and cellular abnormalities. This emerging field, known as molecular imaging, is a relatively new discipline that has been rapidly developed over the past decade. It endeavors to construct a visual representation, characterization, and quantification of biological processes at the molecular and cellular level within living organisms. One of the goals of molecular imaging is to translate our expanding knowledge of molecular biology and genomic sciences into good patient care. The practice of molecular imaging is still largely experimental, and only limited clinical success has been achieved. However, it is anticipated that molecular imaging will move increasingly out of the research laboratory and into the clinic over the next decade. Non-invasive in vivo molecular imaging makes use of nuclear, magnetic resonance, and in vivo optical imaging systems. Recently, an interest in Positron Emission Tomography (PET) has been revived, and along with optical imaging systems PET is assuming new, important roles in molecular genetic imaging studies. Current PET molecular imaging strategies mostly rely on the detection of probe accumulation directly related to the physiology or the level of reporter gene expression. PET imaging of both endogenous and exogenous gene expression can be achieved in animals using reporter constructs and radiolabeled probes. As increasing numbers of genetic markers become available for imaging targets, it is anticipated that a better understanding of genomics will contribute to the advancement of the molecular genetic imaging field. In this report, the principles of non-invasive molecular genetic imaging, its applications and future directions are discussed.
Animals
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Biological Processes
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Gene Expression
;
Genes, Reporter
;
Genetic Markers
;
Genomics
;
Molecular Biology
;
Molecular Imaging*
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Optical Imaging
;
Patient Care
;
Physiology
;
Positron-Emission Tomography
5.Barrett's Esophagus and Cancer Risk: How Research Advances Can Impact Clinical Practice.
Massimiliano DI PIETRO ; Durayd ALZOUBAIDI ; Rebecca C FITZGERALD
Gut and Liver 2014;8(4):356-370
Barrett's esophagus (BE) is the only known precursor to esophageal adenocarcinoma (EAC), whose incidence has increased sharply in the last 4 decades. The annual conversion rate of BE to cancer is significant, but small. The identification of patients at a higher risk of cancer therefore poses a clinical conundrum. Currently, endoscopic surveillance is recommended in BE patients, with the aim of diagnosing either dysplasia or cancer at early stages, both of which are curable with minimally invasive endoscopic techniques. There is a large variation in clinical practice for endoscopic surveillance, and dysplasia as a marker of increased risk is affected by sampling error and high interobserver variability. Screening programs have not yet been formally accepted, mainly due to the economic burden that would be generated by upper gastrointestinal endoscopy. Screening programs have not yet been formally accepted, mainly due to the economic burden that would be generated by widespread indication to upper gastrointestinal endoscopy. In fact, it is currently difficult to formulate an accurate algorithm to confidently target the population at risk, based on the known clinical risk factors for BE and EAC. This review will focus on the clinical and molecular factors that are involved in the development of BE and its conversion to cancer and on how increased knowledge in these areas can improve the clinical management of the disease.
Adenocarcinoma/*etiology
;
Animals
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Barrett Esophagus/*complications/diagnosis
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Diagnostic Imaging/methods
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Disease Models, Animal
;
Epigenesis, Genetic/physiology
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Esophageal Neoplasms/diagnosis/*etiology
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Esophagoscopy/methods
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Forecasting
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Genetic Markers/physiology
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Humans
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Mice
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Practice Guidelines as Topic
;
Risk Factors
6.Association of ADIPOR1 polymorphisms with bone mineral density in postmenopausal Korean women.
Ha Young KIM ; Joo Yeon HWANG ; Bok Ghee HAN ; Jong Young LEE ; Eui Kyun PARK ; Beom Jun KIM ; Seung Hun LEE ; Ghi Su KIM ; Shin Yoon KIM ; Jung Min KOH
Experimental & Molecular Medicine 2012;44(6):394-402
Adiponectin may affect bone through interactions with two known receptors, adiponectin receptors (ADIPOR) 1 and 2. We examined the association between polymorphisms of ADIPOR1 and ADIPOR2 and bone mineral density (BMD) in postmenopausal Korean women. Six polymorphisms in ADIPOR1 and four polymorphisms in ADIPOR2 were selected and genotyped in all study participants (n = 1,329). BMD at the lumbar spine and femur neck were measured using dual-energy X-ray absorptiometry. Lateral thoracolumbar (T4-L4) radiographs were obtained for vertebral fracture assessment and the occurrence of non-vertebral fractures examined using self-reported data. P values were adjusted for multiple testing using Bonferroni correction (Pcorr). ADIPOR1 rs16850799 and rs34010966 polymorphisms were significantly associated with femur neck BMD (Pcorr = 0.036 in the dominant model; Pcorr = 0.024 and Pcorr = 0.006 in the additive and dominant models, respectively). Subjects with the rare allele of each polymorphism had lower BMD, and association of rs34010966 with BMD showed a gene dosage effect. However, ADIPOR2 single nucleotide polymorphisms and haplotypes were not associated with BMD at any site. Our results suggest that ADIPOR1 polymorphisms present a useful genetic marker for BMD in postmenopausal Korean women.
Base Sequence
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Bone Density/*genetics
;
Female
;
Femur Neck/physiology
;
Genetic Association Studies
;
Genetic Markers
;
Genetic Predisposition to Disease
;
Genotype
;
Humans
;
Osteoporosis, Postmenopausal/*genetics
;
Polymorphism, Single Nucleotide
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Postmenopause
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Receptors, Adiponectin/*genetics
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Republic of Korea
;
Sequence Analysis, DNA
7.Multilineage differentiation of dental pulp stem cells from green fluorescent protein transgenic mice.
Brian E GROTTKAU ; P Prasad PURUDAPPA ; Yun-feng LIN
International Journal of Oral Science 2010;2(1):21-27
AIMThe aim of this study was to confirm the multilineage differentiation ability of dental pulp stem cells (DPSCs) from green fluorescent protein (GFP) transgenic mice. The expression of GFP in DPSCs was also observed during differentiation.
METHODOLOGYDPSCs were harvested from the dental pulp tissue of transgenic nude mice, and then transferred to osteogenic, adipogenic, and chondrogenic media. The morphological characterization of induced cells was observed by microscopy and histological staining. The expression of marker genes was measured by RT-PCR.
RESULTSThe endogenous GFP and multilineage potential of transgenic DPSCs had no influence on each other. Moreover, the results of fluorescence microscopic imaging suggest that there was no significant decline of GFP expression during DPSCs differentiation.
CONCLUSIONAs the population of GFP labeled DPSCs can be easily identified, this will be a promising method for tracking DPSCs in vivo.
Adipocytes ; cytology ; Adipogenesis ; physiology ; Animals ; Anthraquinones ; Azo Compounds ; Cell Culture Techniques ; Cell Differentiation ; physiology ; Cell Lineage ; physiology ; Chondrocytes ; cytology ; Chondrogenesis ; physiology ; Coloring Agents ; Culture Media ; Dental Pulp ; cytology ; Genetic Markers ; genetics ; Green Fluorescent Proteins ; analysis ; genetics ; Mice ; Mice, Nude ; Mice, Transgenic ; Microscopy, Fluorescence ; Osteoblasts ; cytology ; Osteogenesis ; physiology ; RNA ; analysis ; Reverse Transcriptase Polymerase Chain Reaction ; Stem Cells ; cytology ; physiology ; Tissue Culture Techniques ; Tolonium Chloride
8.Monitoring of WT-1 gene expression in peripheral blood of patients with acute leukemia by semiquantitative RT-PCR; possible marker for detection of minimal residual leukemia.
Seong Cheol KIM ; Nae Choon YOO ; Jee Sook HAHN ; Seok LEE ; So Young CHONG ; Yoo Hong MIN ; Yun Woong KO
Yonsei Medical Journal 1997;38(4):212-219
The expression of the WT-1 gene which is found exclusively in human leukemic blasts frequently disappears from bone marrow of leukemia patients in complete remission (CR). Using semiquantitative RT-PCR, we investigated the expression of the WT-1 gene in peripheral bloods (PBs) of 33 patients with acute leukemia (AML 26; ALL 7) and monitored its expression after achievement of CR. None of the 6 normal controls expressed detectable levels of WT-1 transcripts (< 10(-4), background level), whereas 31 (93.9%) of 33 patients expressed variable levels of WT-1 transcripts (range, 10(-4) to 10(1)) at diagnosis. The level of WT-1 expression was not different between AML and ALL. By monitoring WT-1 gene expression in PB of 31 patients during CR, 5 patients relapsed (two from the 18 patients with undetectable levels of WT-1 gene expression and three from the 13 with WT-1 gene expression in low levels). Three of the 5 relapsed patients showed preceding reappearance or rise of WT-1 gene expression. From these results, we reconfirmed that the WT-1 gene is a pan-acute leukemic marker, which can be used to monitor minimal residual leukemia (MRL) after chemotherapy or in patients with CR.
Gene Expression/physiology*
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Human
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Leukemia, Lymphocytic, Acute/genetics*
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Leukemia, Lymphocytic, Acute/blood*
;
Leukemia, Myelocytic, Acute/genetics*
;
Leukemia, Myelocytic, Acute/blood*
;
Neoplasm, Residual
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Nephroblastoma/genetics*
;
Polymerase Chain Reaction
;
Transcription, Genetic
;
Tumor Markers, Biological
9.Genetic Mutation in Korean Patients of Sudden Cardiac Arrest as a Surrogating Marker of Idiopathic Ventricular Arrhythmia.
Myoung Kyun SON ; Chang Seok KI ; Seung Jung PARK ; June HUH ; June Soo KIM ; Young Keun ON
Journal of Korean Medical Science 2013;28(7):1021-1026
Mutation or common intronic variants in cardiac ion channel genes have been suggested to be associated with sudden cardiac death caused by idiopathic ventricular tachyarrhythmia. This study aimed to find mutations in cardiac ion channel genes of Korean sudden cardiac arrest patients with structurally normal heart and to verify association between common genetic variation in cardiac ion channel and sudden cardiac arrest by idiopathic ventricular tachyarrhythmia in Koreans. Study participants were Korean survivors of sudden cardiac arrest caused by idiopathic ventricular tachycardia or fibrillation. All coding exons of the SCN5A, KCNQ1, and KCNH2 genes were analyzed by Sanger sequencing. Fifteen survivors of sudden cardiac arrest were included. Three male patients had mutations in SCN5A gene and none in KCNQ1 and KCNH2 genes. Intronic variant (rs2283222) in KCNQ1 gene showed significant association with sudden cardiac arrest (OR 4.05). Four male sudden cardiac arrest survivors had intronic variant (rs11720524) in SCN5A gene. None of female survivors of sudden cardiac arrest had SCN5A gene mutations despite similar frequencies of intronic variants between males and females in 55 normal controls. Common intronic variant in KCNQ1 gene is associated with sudden cardiac arrest caused by idiopathic ventricular tachyarrhythmia in Koreans.
Adolescent
;
Adult
;
Aged
;
Arrhythmias, Cardiac/genetics
;
*Death, Sudden, Cardiac
;
Ether-A-Go-Go Potassium Channels/genetics
;
Female
;
Genetic Markers
;
Genetic Predisposition to Disease
;
Genetic Variation
;
Heart/physiology
;
Heart Conduction System/abnormalities
;
Humans
;
KCNQ1 Potassium Channel/*genetics
;
Male
;
Middle Aged
;
NAV1.5 Voltage-Gated Sodium Channel/*genetics
;
Republic of Korea
;
Tachycardia, Ventricular/*genetics
;
Ventricular Fibrillation/*genetics
;
Young Adult
10.Molecular characterization of Escherichia coli O157:H7 strains isolated from different sources and geographic regions.
Adriana Hamond REGUA-MANGIA ; Alice Goncalves M GONZALEZ ; Aloysio M F CERQUEIRA ; Joao Ramos C ANDRADE
Journal of Veterinary Science 2012;13(2):139-144
Escherichia (E.) coli serotype O157:H7 is a globally distributed human enteropathogen and is comprised of microorganisms with closely related genotypes. The main reservoir for this group is bovine bowels, and infection mainly occurs after ingestion of contaminated water and food. Virulence genetic markers of 28 O157:H7 strains were investigated and multilocus enzyme electrophoresis (MLEE) was used to evaluate the clonal structure. O157:H7 strains from several countries were isolated from food, human and bovine feces. According to MLEE, O157:H7 strains clustered into two main clonal groups designated A and B. Subcluster A1 included 82% of the O157:H7 strains exhibiting identical MLEE pattern. Most enterohemorrhagic E. coli (EHEC) O157:H7 strains from Brazil and Argentina were in the same MLEE subgroup. Bovine and food strains carried virulence genes associated with EHEC pathogenicity in humans.
Animals
;
Argentina/epidemiology
;
Brazil/epidemiology
;
Cattle
;
Cattle Diseases/epidemiology/*microbiology
;
Enterohemorrhagic Escherichia coli/genetics/*isolation & purification/pathogenicity
;
Escherichia coli O157/*genetics/*isolation & purification/pathogenicity
;
Food Microbiology
;
Gene Expression Regulation, Bacterial/physiology
;
Genetic Markers
;
Humans
;
Polymerase Chain Reaction/veterinary
;
Shiga Toxin 1/genetics/metabolism
;
Shiga Toxin 2/genetics/metabolism
;
Virulence