1.Distinguishing Tendon and Ligament Fibroblasts Based on ¹H Nuclear Magnetic Resonance Spectroscopy.
Hun Yeong BAN ; Ji Won SHIN ; Song I CHUN ; Yun Gyeong KANG ; Yanru WU ; Ji Eun KIM ; Eun Jin LEE ; Mi Jin KIM ; Chi Woong MUN ; Jung Woog SHIN
Tissue Engineering and Regenerative Medicine 2016;13(6):677-683
Tendon and ligament (T/L) have been known to be obviously different from each other in tissue level. However, due to the overlapping gene markers, distinction in cellular level has not been clearly verified yet. Recently, the use of nuclear magnetic resonance (NMR) spectroscopy has shown the potential to detect biological markers in cellular level. Therefore, in this study we applied a non-invasive technique based on NMR spectroscopy to establish biomarkers to distinguish between T/L fibroblasts. In addition the cellular morphologies and gene expression patterns were also investigated for comparison through optical microscopy and real-time polymerase chain reaction (PCR). No difference was observed from morphology and real-time PCR results, either as expected. However, we found clear differences in their metabolomic spectra using ¹H NMR spectroscopy. The calculated integral values of fatty acids (with chemical shifts at ~0.9, 1.26, 1.59, 2.05, 2.25, and 2.81 ppm), lactate (~1.33 ppm), and leucine (~2.72 ppm) were significantly different between the two types of fibroblasts. To be specific tendon group exhibited higher level of the metabolite than ligament group. In conclusion, in-cell metabolomic evaluation by NMR technique used in this study is believed to provide a promising tool in distinguishing cell types, especially T/L cells, which cannot be classified by conventional biological assays.
Biological Assay
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Biomarkers
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Fatty Acids
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Fibroblasts*
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Gene Expression
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Genes, Overlapping
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Lactic Acid
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Leucine
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Ligaments*
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Magnetic Resonance Spectroscopy*
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Metabolomics
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Microscopy
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Real-Time Polymerase Chain Reaction
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Spectrum Analysis*
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Tendons*
2.Adipose Gene Expression Profiles Related to Metabolic Syndrome Using Microarray Analyses in Two Different Models.
Hye Jin YOO ; Hwan Jin HWANG ; Tae Woo JUNG ; Ja Young RYU ; Ho Cheol HONG ; Hae Yoon CHOI ; Sei Hyun BAIK ; Kyung Mook CHOI
Diabetes & Metabolism Journal 2014;38(5):356-365
BACKGROUND: Peroxisome proliferator-activated receptor-gamma (PPAR-gamma) agonist has a wide-ranging influence on multiple components of metabolic syndrome. The Otsuka Long-Evans Tokushima Fatty (OLETF) rat is a useful animal model of metabolic syndrome. To determine genes related to metabolic syndrome, we examined overlapping genes that are simultaneously decreased by PPAR-gamma agonists and increased in OLETF rats using microarrays in two different models. METHODS: In the first microarray analysis, PPAR-gamma agonist-treated db/db mice were compared to standard diet-fed db/db mice. In the second microarray analysis, OLETF rats were compared to Long-Evans Tokushima Otsuka (LETO) rats (control of OLETF rats). RESULTS: Among the overlapping genes, in the present study, we validated that lipocalin-2 expression was significantly decreased in the visceral adipose tissue of PPAR-gamma agonist-treated db/db mice compared to standard diet-fed db/db mice and increased in OLETF rats compared to LETO rats using real time reverse transcription polymerase chain reaction. Furthermore, we showed for the first time that lipocalin-2 expression was significantly increased in the visceral adipose tissues of obese humans compared with nonobese humans. In addition, the expression level of lipocalin-2 in human visceral adipose tissue had a significant positive correlation with body mass index, serum interleukin-6, adipocyte fatty acid binding protein levels, and white blood cell count. CONCLUSION: Lipocalin-2 was confirmed to be a significant adipokine affected by PPAR-gamma agonist and obesity in the present study. Also, for the first time in human visceral adipose tissue, it was determined that the expression of lipocalin-2 from obese humans was significantly increased and correlated with circulating inflammatory markers.
Adipocytes
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Adipokines
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Animals
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Body Mass Index
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Carrier Proteins
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Genes, Overlapping
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Humans
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Interleukin-6
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Intra-Abdominal Fat
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Leukocyte Count
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Mice
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Microarray Analysis
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Models, Animal
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Obesity
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Peroxisomes
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Polymerase Chain Reaction
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PPAR gamma
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Rats
;
Rats, Inbred OLETF
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Reverse Transcription
;
Transcriptome*
3.Overlapping Gene Mutations of Hepatitis B Virus in a Chronic Hepatitis B Patient with Hepatitis B Surface Antigen Loss during Lamivudine Therapy.
Sun Young LEE ; Moon Seok CHOI ; Dongho LEE ; Joon Hyoek LEE ; Kwang Cheol KOH ; Seung Woon PAIK ; Byung Chul YOO
Journal of Korean Medical Science 2005;20(3):433-437
Disappearance of hepatitis B surface antigens (HBsAg) in chronic hepatitis B usually indicates clearance of hepatitis B virus (HBV) infection. However, false HBsAg negativity with mutations in pre-S2 and 'a' determinant has been reported. It is also known that YMDD mutations decrease the production of HBV and escape detection of serum HBsAg. Here, we report overlapping gene mutations in a patient with HBsAg loss during the lamivudine therapy. After 36 months of lamivudine therapy in a 44-yrold Korean chronic hepatitis B patient, serum HBsAg turned negative while HBV DNA remained positive by a DNA probe method. Nucleotide sequence of serum HBV DNA was compared with the HBV genotype C subtype adr registered in NCBI AF 286594. Deletion of nucleotides 23 to 55 (amino acids 12 to 22) was identified in the pre-S2 region. Sequencing of the 'a' determinant revealed amino acid substitutions as I126S, T131N, M133T, and S136Y. Methionine of rtM204 in the P gene was substituted for isoleucine indicating YIDD mutation (rtM204I). We identified a HBV mutant composed of pre-S2 deletions and 'a' determinant substitutions with YMDD mutation. Our result suggests that false HBsAg negativity can be induced by combination of overlapping gene mutations during the lamivudine therapy.
Adult
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Amino Acid Sequence
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Anti-HIV Agents/therapeutic use
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Base Sequence
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Comparative Study
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DNA Mutational Analysis
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DNA, Viral/blood/chemistry/genetics
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DNA-Directed DNA Polymerase/genetics
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Gene Deletion
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Genes, Overlapping/*genetics
;
Hepatitis B Surface Antigens/blood/*genetics
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Hepatitis B virus/*genetics
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Hepatitis B, Chronic/blood/*drug therapy/virology
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Humans
;
Lamivudine/*therapeutic use
;
Male
;
Molecular Sequence Data
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*Mutation
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Protein Precursors/genetics
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Sequence Alignment
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Sequence Homology, Amino Acid
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Sequence Homology, Nucleic Acid
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Viral Proteins/genetics
4.A study on mutations of the overlapping hepatitis B virus surface and polymerase gene in patients with HBV reinfection after liver transplantations.
Hong-li SONG ; Zhong-yang SHEN ; Jian WANG ; Wei-ping ZHENG ; Zheng-lu WANG
Chinese Journal of Hepatology 2008;16(4):265-269
OBJECTIVETo investigate the influence of combined hepatitis B immune globulin (HBIG) and lamivudine (LMV) treatment on hepatitis B virus (HBV) surface antigen and polymerase overlapping gene mutations in HBV reinfected liver transplant recipients.
METHODSFrom June 2002 to December 2003, 320 patients who underwent liver transplantations due to HBV-related end-stage liver diseases were followed-up for 1.5 to 3 years postoperatively. Fourteen patients developed HBV reinfection. They had LMV before their liver transplantations and had LMV and HBIG after the transplantations to prevent HBV infections. Their serum levels of HBV DNA were measured by polymerase chain reaction. Gene sequencing method was used to analyze HBV genotype and mutations of the S gene. Micro-particle enzyme immunoassay was used to measure the serum concentration of HBIG.
RESULTS(1) There was no obvious difference in the number of amino acid mutation sites in S and P regions before and after the transplantations. (2) The HBV genotypes were B-type (n=2) and C-type (n=12) in the reinfected group before the transplantations, and genotypes after the transplantations remained the same. (3) HBIG concentrations were 0 U/L in 7 patients, less than 100 U/L in 5 patients, and more than 100 U/L in 2 patients. Mutations were detected as I126S, T131N, S143T and G145R in 'a' determinant and L110F, I113S, T160K in up- or down-stream of 'a' determinant. (4) Mutations in S gene caused missense mutation in the surface antigen region. These mutations also caused corresponding missense mutations in the polymerase region. The missense mutation in the polymerase region involved lamivudine mutation sites and other mutation sites.
CONCLUSIONImmunosuppressant therapy has no obvious influence on the numbers of mutations, but it can influence the sites of the mutations. Besides 'a' determinant mutations, there exist mutations in up- or down-streams of 'a' determinant and they may cause HBV reinfection.
Adult ; Female ; Gene Frequency ; Genome, Viral ; Genotype ; Hepatitis B ; drug therapy ; virology ; Hepatitis B Surface Antigens ; genetics ; Hepatitis B virus ; genetics ; Humans ; Immunoglobulins ; therapeutic use ; Lamivudine ; therapeutic use ; Liver Transplantation ; Male ; Middle Aged ; Mutation ; Nested Genes ; Recurrence