1.Case of D-Variant from a Frameshift Mutation RHD 711delC
Taeo MA ; Hongbi YU ; Suhak JEON ; Duck CHO ; Sejong CHUN ; Myung Geun SHIN
Korean Journal of Blood Transfusion 2019;30(2):168-173
D antigens are clinically significant, and routine tests on the D antigen requires the inclusion of weak D testing, which is performed using indirect antihuman immunoglobulin methods. On the other hand, exact typing of the D type of an individual can be done more precisely with RHD genotyping, which is a useful tool in cases where the RHD gene is intact. The majority of weak-D or partial-D cases are from single nucleotide changes or hybridization of RHD and RHCE genes. Nevertheless, frameshift mutations can also result in weak or partial-D. The characteristics of a frameshift mutation is typically a change in protein product after a problematic mutation and early termination of transcription, leading into truncated protein products. This paper reports a D-variant case with RHD 711delC along with a review of the relevant literature. In addition, the results of software analysis are reported.
Frameshift Mutation
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Genotype
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Hand
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Immunoglobulins
2.A Frameshift Mutation of the Pro-Apoptotic VDAC1 Gene in Cancers with Microsatellite Instability.
Nam Jin YOO ; Sang Wook PARK ; Sug Hyung LEE
Gut and Liver 2011;5(4):548-549
No abstract available.
Frameshift Mutation
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Microsatellite Instability
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Microsatellite Repeats
3.A Case with Spondyloepiphyseal Dysplasia Tarda with TRAPPC2 Mutation.
Hyun Jin KIM ; Beom Hee LEE ; Yoo Mi KIM ; Gu Hwan KIM ; Ok Hwa KIM ; Han Wook YOO
Journal of Genetic Medicine 2012;9(1):31-34
Spondyloepiphyseal dysplasia tarda (SEDT) is an X-linked skeletal dysplasia. Patients show disproportionate short stature with short trunk and barrel-shaped chest, which usually become pronounced in late childhood. The radiologic findings are characterized by narrow intervertebral disc spaces and moderate epiphyseal dysplasia of long bones. Here we report a case of SEDT with a novel frameshift mutation in TRAPPC2, the disease-causing gene of SEDT. This is the first Korean report with SEDT confirmed by genetic testing.
Frameshift Mutation
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Genetic Testing
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Humans
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Intervertebral Disc
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Osteochondrodysplasias
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Thorax
4.Founder Mutations for Early Onset Melanoma as Revealed by Whole Exome Sequencing Suggests That This is Not Associated with the Increasing Incidence of Melanoma in Poland.
Tadeusz DĘBNIAK ; Rodney J SCOTT ; Rodney A LEA ; Bohdan GÓRSKI ; Bartłomiej MASOJĆ ; Cezary CYBULSKI ; Andrzej KRAM ; Romuald MALESZKA ; Tomasz GROMOWSKI ; Katarzyna PASZKOWSKA-SZCZUR ; Aniruddh KASHYAP ; Marcin R LENER ; Karolina MALIŃSKA ; Emilia ROGOŻA ; Dawid MURAWA ; Helena RUDNICKA ; Jakub DEPTUŁA ; Jan LUBIŃSKI
Cancer Research and Treatment 2019;51(1):337-344
PURPOSE: Germline mutations within melanoma susceptibility genes are present only in minority of melanoma patients and it is expected that additional genes will be discovered with next generation sequence technology and whole-exome sequencing (WES). MATERIALS AND METHODS: Herein we performed WES on a cohort of 96 unrelated Polish patients with melanoma diagnosed under the age of 40 years who all screened negative for the presence of CDKN2A variants. A replication study using a set of 1,200 melanoma patient DNA samples and similarly large series of healthy controls was undertaken. RESULTS: We selected 21 potentially deleterious variants in 20 genes (VRK1, MYCT1, DNAH14, CASC3, MS4A12, PRC1, WWOX, CARD6, EXO5, CASC3, CASP8AP2, STK33, SAMD11, CNDP2, CPNE1, EFCAB6, CABLES1, LEKR1, NUDT17, and RRP15), which were identified by WES and confirmed by Sanger sequencing for an association study. Evaluation of the allele distribution among carriers and their relatives in available family trios revealed that these variants were unlikely to account for many familial cases of melanoma. Replication study revealed no statistically significant differences between cases and controls. CONCLUSION: Although most of the changes seemed to be neutral we could not exclude an association between variants in VRK1, CREB3L3, EXO5, and STK33 with melanoma risk.
Alleles
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Cohort Studies
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DNA
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Exome*
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Frameshift Mutation
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Germ-Line Mutation
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Humans
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Incidence*
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Melanoma*
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Poland*
5.Genetic testing and clinical analysis of a patient with Dilated cardiomyopathy due to variant of FLNC gene.
Yanlong REN ; Yahui ZHANG ; Xiaoping ZHANG ; Yueli WANG ; Xuxia LIU ; Jin SHENG ; Shangqiu NING ; Wenxian LIU ; Xiaoyan LI
Chinese Journal of Medical Genetics 2023;40(12):1551-1555
OBJECTIVE:
To explore the genetic basis for a patient with Dilated cardiomyopathy.
METHODS:
A patient admitted to Beijing Anzhen Hospital Affiliated to Capital Medical University in April 2022 was selected as the study subject. Clinical data and family history of the patient was collected. Targeted exome sequencing was carried out. Candidate variant was verified by Sanger sequencing and bioinformatic analysis based on guidelines of the American College of Medical Genetics and Genomics (ACMG).
RESULTS:
DNA sequencing revealed that the patient has harbored a heterozygous c.5044dupG frameshift variant of the FLNC gene. Based on the ACMG guidelines, the variant was predicted to be likely pathogenic (PVS1+PM2_Supporting+PP4).
CONCLUSION
The heterozygous c.5044dupG variant of the FLNC gene probably underlay the pathogenesis in this patient, which has provided a basis for the genetic counseling for his family.
Humans
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Cardiomyopathy, Dilated/genetics*
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Genetic Testing
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Genetic Counseling
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Computational Biology
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Frameshift Mutation
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Mutation
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Filamins
6.Frameshift Mutation of MARS Gene Encoding an Aminoacyl-tRNA Synthetase in Gastric and Colorectal Carcinomas with Microsatellite Instability.
Sang Wook PARK ; Sung Soo KIM ; Nam Jin YOO ; Sug Hyung LEE
Gut and Liver 2010;4(3):430-431
No abstract available.
Amino Acyl-tRNA Synthetases
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Colorectal Neoplasms
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Frameshift Mutation
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Mars
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Microsatellite Instability
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Microsatellite Repeats
7.Clinicopathologic Characteristics of Replication Error-Positive Gastric Adenocarcinoma in Korean.
Jae Hyuk LEE ; Mi Hwa KIM ; Wan Sik LEE ; Young Jin KIM ; Mi Sun JEE ; Kwang Min LEE ; Sang Woo JUHNG ; Chan CHOI
Korean Journal of Pathology 2000;34(7):488-493
The purpose of this study is to obtain the clinicopathological characteristics of replication error-positive (RER ) gastric adenocarcinoma in Korean, and to identify the significance of RER in adenoma stage of gastric carcinogenesis. Microsatellite instability was examined at D2S71, D2S119, D3S1067, D6S87, D11S905, DM, AR, VWF, HPRT, and BAT-26 loci. Frameshift mutation of BAX gene was analyzed in RER tumors. Normal and tumor DNA of 76 cases of gastric carcinoma and 25 cases of adenoma were examined. RER was found in 8 of 76 cases (10.5%), and it was more frequently found in adenocarcinoma of female (17.7%) than those of male (4.8%). The frequency of RER was not different between the histologic types, age of the patient, anatomical location of the carcinoma, and the stage. The RER found in adenoma suggests that RER contributes to the malignant transformation early in the adenoma stage of the gastric carcinogenesis. None of the RER tumors revealed frameshift mutation of the BAX gene.
Adenocarcinoma*
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Adenoma
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Carcinogenesis
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DNA
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Female
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Frameshift Mutation
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Humans
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Hypoxanthine Phosphoribosyltransferase
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Male
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Microsatellite Instability
8.Minimal deviation adenocarcinoma of the cervix and tumorlets of sex-cord stromal tumor with annular tubules of the ovary in Peutz-Jeghers syndrome.
Sun Young KWON ; Mi Sun CHOE ; Hye Won LEE ; Hee Jung LEE ; So Jin SHIN ; Chi Heum CHO
Journal of Gynecologic Oncology 2013;24(1):92-95
We report 2 cases of minimal deviation adenocarcinoma of the cervix and tumorlets of sex cord tumor with annular tubules (SCTATs) of the ovaries, accompanied by Peutz-Jeghers syndrome. Case 1 is a 36-year-old woman and case 2 is a 35-year-old woman. Grossly, the cervix of both cases showed markedly barrel shaped enlargement with an infiltrating tumor. Microscopically, well-differentiated atypical glands were infiltrating into the entire thickness of the cervix. The ovarian masses in case 1 were diagnosed as metastatic carcinoma in mucinous cystadenoma with tumorlets of SCTATs of the ovaries. Multiple scattered tumorlets of SCTATs were also found in the ovary of case 2. By direct DNA sequencing analysis, a frame shift mutation of the STK11/LKB1 gene was identified in case 1. Case 1 represented the more aggressive clinical course, and although the patient received additional combined chemo-radiation therapy, she expired 1 year later. In general, mutation of the STK11/LKB1 gene is associated with poor clinical outcome in malignant tumors accompanied by Peutz-Jeghers syndrome.
Adenocarcinoma
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Cervix Uteri
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Cystadenoma, Mucinous
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Female
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Frameshift Mutation
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Humans
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Ovary
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Peutz-Jeghers Syndrome
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Sequence Analysis, DNA
9.A Case of Familial Isolated Primary Hyperparathyroidism with a Novel Gene Mutation.
Sung Woo KIM ; Seung Jun LEE ; Hyun Suk KIM ; Ji Youn KIM ; Eui Dal JUNG ; Duk Su JUNG
Endocrinology and Metabolism 2010;25(4):374-377
Familial isolated primary hyperparathyroidism (FIHP) is an autosomal dominant disorder that is characterized by an early stage of either multiple endocrine neoplasia type 1 (MEN1) or hyperparathyroidism-jaw tumor (HPT-JT) syndrome. We report here on a case of a 42-years old woman who was diagnosed with papillary thyroid cancer and primary hyperparathyroidism. Her younger brother also had primary hyperparathyroidism. On the genetic analysis, they were both proven to have a novel frameshift mutation in the MEN1 gene (exon 10).
Female
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Frameshift Mutation
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Humans
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Hyperparathyroidism, Primary
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Multiple Endocrine Neoplasia Type 1
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Siblings
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Thyroid Neoplasms
10.Charcot-Marie-Tooth type 1A Patient with a Novel Frame Shift Mutation (Ala106fs) in the PMP22 Gene.
Byung Ok CHOI ; Ki Wha CHUNG ; Kee Duk PARK ; Kyoung Gyu CHOI ; Seung Min KIM ; Yongsoeng KIM ; Mi Sun LEE ; Il Nam SUNWOO
Journal of the Korean Neurological Association 2004;22(6):673-676
Charcot-Marie-Tooth disease (CMT) with hearing impairment is a clinically distinct rare entity described in a few families, usually with a demyelinating neuropathy. The molecular basis for this disease has not been established with certainty. Audiological evaluation has revealed auditory neuropathy in the affected individual. We report a CMT1A family with sensorineural hearing loss and a novel frame shift mutation Ala106fs (318delT) in the PMP22 gene.
Charcot-Marie-Tooth Disease
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Deafness
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Frameshift Mutation*
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Hearing Loss
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Hearing Loss, Sensorineural
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Humans