2.Application and Prospect of RNA Profiling Analysis in Forensic Body Fluid Identification.
Shou-Yu WANG ; Rui-Yang TAO ; Yi-Ping HOU ; Cheng-Tao LI
Journal of Forensic Medicine 2022;38(6):763-773
In forensic physical evidence identification, the accurate identification of the individual origin and their body fluid composition of the biological samples obtained from the crime scene play a critical role in determining the nature of a crime. In recent years, RNA profiling has become one of the fastest developing methods for body fluids identification. Due to the characteristics of tissue or body fluid specific expression, various types of RNA markers have been proven to be promising candidate markers for body fluids identification in previous studies. This review summarizes the research progress of RNA markers in body fluids identification, including the RNA markers that have been effectively verified in current research and their advantages and disadvantages. Meanwhile, this review prospects the application of RNA markers in forensic medicine.
Forensic Medicine/methods*
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Body Fluids/chemistry*
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RNA/analysis*
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Feces
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Forensic Genetics
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Semen/chemistry*
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Saliva/chemistry*
3.Detection of anisodamine and its metabolites in rat feces by tandem mass spectrometry.
Huai-Xia CHEN ; Peng DU ; Feng-Mei HAN ; Yong CHEN
Acta Pharmaceutica Sinica 2006;41(12):1166-1169
AIMTo establish a LC-MS(n) method for the identification of anisodamine and its metabolites in rat feces.
METHODSFeces samples were collected after single administration of 25 mg x kg(-1) anisodamine to rats, and dipped in water for 1 h. Samples were then extracted by ethyl acetate. The pretreated samples were separated on a reversed-phase C18 column using a mobile phase of methanol / 0.01% triethylamine (adjusted to pH 3.5 with formic acid) (60 : 40, v/v) and detected by LC-MS". Identification of the metabolites and elucidation of their structures were performed by comparing their changes in molecular masses (deltaM), retention-times and full scan MS(n) spectra with those of the parent drug and blank feces.
RESULTSThe parent drug and its seven metabolites (6beta-hydroxytropine, nor-6beta-hydroxytropine, aponoranisodamine, apoanisodamine, noranisodamine and hydroxyanisodamine, tropic acid) were found in rat feces.
CONCLUSIONThis method is sensitive, rapid, simple, effective, and suitable for the rapid identification of drug and its metabolites in biologic samples.
Animals ; Feces ; chemistry ; Rats ; Rats, Wistar ; Solanaceous Alkaloids ; analysis ; metabolism ; Tandem Mass Spectrometry ; methods
4.Preliminary study on bacteroides as the potential fecal contamination indicator bacteria.
Jing-yan YANG ; Zhi-jin CHEN ; Xiao-bei DING ; Wei HUANG ; Rui-jia YANG ; Xiao-fang PEI
Chinese Journal of Preventive Medicine 2011;45(3):230-234
OBJECTIVETo explore the possibility of Bacteroides spp. as fecal contamination indicator bacteria with real-time quantitative PCR (RT-PCR) assay through analyzing the correlation between Bacteroides spp. and coliform group in external environment.
METHODSQuantity of coliform group and Bacteroides in water samples were detected by most-probable-number method (MPN) and RT-PCR, respectively, and their detection correlation was evaluated with linear correlation analysis. Both methods were also applied to detect the contaminated time limits and river water samples collected at four sampling sites in three different times.
RESULTSSeventy two hours were needed for the numeration of coliform group with MPN method, while RT-PCR could detect Bacteroides within 3 hours. The contaminated time limit of indoor and outdoor water samples of coliform group was more than 40 days and 9 days, and Bacteroides 13 days and 5 days, respectively. Also, the positive correlation between the quantity of Bacteroides and coliform group in outdoor water samples was obtained, the quantity of Bacteroides was from 8.3 × 10(6) copies/ml to less than 10(4) copies/ml during the first day to the fifth day, while coliform group was 4.3 × 10(6) MPN/100 ml to 2.4 × 10(3) MPN/100 ml. A 100% coincidence rate of the detection results with both methods was also observed. These results indicated that the detection results of both methods had perfect consistency.
CONCLUSIONBacteroides spp. can be potentially used as fecal contamination indicator bacteria with RT-PCR rapid detection.
Bacteroides ; Environmental Microbiology ; Environmental Monitoring ; methods ; Escherichia coli ; Feces ; microbiology ; Rivers ; microbiology ; Water Pollutants ; analysis
5.The effect of transferrin detecting in digestive tract hemorrhage detection rate.
Chinese Journal of Medical Instrumentation 2011;35(6):462-464
OBJECTIVETo compare the sensitivity, the specificity and the anti-jamming of several excrement occult blood experimental techniques. To evaluate the effect of transferrin (Tf) in the excrement in the digestive tract hemorrhage detection rate.
METHODSFor 600 patients of clinical suspicious digestive tract hemorrhage, take their excrement specimen, using the chemical process (pyramidon semi-quantitative examination law) to detect hemoglobin (Hb), and using monoclonal antibody colloidal gold method to detect Hb and Tf.
RESULTSFinally the hemoglobin chemical process (hereafter refers to as chemical process) to detect upper gastrointestinal hemorrhage with the positive rate 57.3%, and the detection of hemorrhage of lower digestive tract's positive rate is 44.8%; Hemoglobin monoclonal antibody colloidal gold method (hereafter refers to as colloid gold law) to examine upper gastrointestinal hemorrhage with a positive rate 60.4%, under examination hemorrhage with positive rate 77.6%; transferrin monoclonal antibody colloidal gold method (hereafter refer to as transferrin law) to examine upper gastrointestinal hemorrhage with a positive rate 82.3%, examination hemorrhage of lower digestive tract with a positive rate 66.4%; The union examination law (hemoglobin and transferrin to be detected twice, once positive that is positive) examines upper gastrointestinal hemorrhage the positive rate is 90.8%, hemorrhage of lower digestive tract's positive rate is 97.6%.
CONCLUSIONExcrement transferrin has the high detection rate in the upper gastrointestinal hemorrhage; Hb and the Tf combined examination may obviously raise the digestive tract hemorrhagic disease's positive detection rate.
Feces ; chemistry ; Gastrointestinal Hemorrhage ; diagnosis ; Gold Colloid ; Humans ; Occult Blood ; Transferrin ; analysis
6.Metabolic study of ginsenoside Re in rats.
Guangtong CHEN ; Min YANG ; Dean GUO
China Journal of Chinese Materia Medica 2009;34(12):1540-1543
OBJECTIVETo systemically study the metabolism of ginsenoside Re in rats.
METHODSix SD rats were used divided into 3 groups. After oral administration of ginsenoside Re at a dosage of 100 mg x kg(-1), feces were collected at 12, 24, 36, 48, and 60 h. The microbial transformation metabolites of ginsenoside Re were used as standard references. HPLC-ESI-MS/MS analysis was used in the metabolism studies.
RESULTSix metabolites of ginsenoside Re were detected in rat feces by HPLC-ESI-MS/MS analysis. Their structures were identified as 20(S)-ginsenoside Rg2, 20(S)-ginsenoside Rh1, 20(R)-ginsenoside Rh1, ginsenoside F1, 3-oxo-ginsenoside Rh1 and protopanaxatriol.
CONCLUSIONGinsenoside Re has the same metabolic pathway with microorganisms, to some extent, justified the use of microbial models for mammalian metabolism studies.
Administration, Oral ; Animals ; Biotransformation ; Feces ; chemistry ; Ginsenosides ; analysis ; metabolism ; Male ; Rats ; Rats, Sprague-Dawley
7.Head-to-head comparison of the test performance of self-administered qualitative vs. laboratory-based quantitative fecal immunochemical tests in detecting colorectal neoplasm.
Ming LU ; Yu-Han ZHANG ; Bin LU ; Jie CAI ; Cheng-Cheng LIU ; Hong-Da CHEN ; Min DAI
Chinese Medical Journal 2021;134(11):1335-1344
BACKGROUND:
Fecal immunochemical tests (FITs) are the most widely used non-invasive tests in colorectal cancer (CRC) screening. However, evidence about the direct comparison of the test performance of the self-administered qualitative a laboratory-based quantitative FITs in a CRC screening setting is sparse.
METHODS:
Based on a CRC screening trial (TARGET-C), we included 3144 pre-colonoscopy fecal samples, including 24 CRCs, 230 advanced adenomas, 622 non-advanced adenomas, and 2268 participants without significant findings at colonoscopy. Three self-administered qualitative FITs (Pupu tube) with positivity thresholds of 8.0, 14.4, or 20.8 μg hemoglobin (Hb)/g preset by the manufacturer and one laboratory-based quantitative FIT (OC-Sensor) with a positivity threshold of 20 μg Hb/g recommended by the manufacturer were tested by trained staff in the central laboratory. The diagnostic performance of the FITs for detecting colorectal neoplasms was compared in the different scenarios using the preset and adjusted thresholds (for the quantitative FIT).
RESULTS:
At the thresholds preset by the manufacturers, apart from the qualitative FIT-3, significantly higher sensitivities for detecting advanced adenoma were observed for the qualitative FIT-1 (33.9% [95% CI: 28.7-39.4%]) and qualitative FIT-2 (22.2% [95% CI: 17.7-27.2%]) compared to the quantitative FIT (11.7% [95% CI: 8.4-15.8%]), while at a cost of significantly lower specificities. However, such difference was not observed for detecting CRC. For scenarios of adjusting the positivity thresholds of the quantitative FIT to yield comparable specificity or comparable positivity rate to the three qualitative FITs accordingly, there were no significant differences in terms of sensitivity, specificity, positive/negative predictive values and positive/negative likelihood ratios for detecting CRC or advanced adenoma between the two types of FITs, which was further evidenced in ROC analysis.
CONCLUSIONS
Although the self-administered qualitative and the laboratory-based quantitative FITs had varied test performance at the positivity thresholds preset by the manufacturer, such heterogeneity could be overcome by adjusting thresholds to yield comparable specificities or positivity rates. Future CRC screening programs should select appropriate types of FITs and define the thresholds based on the targeted specificities and manageable positivity rates.
Colonoscopy
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Colorectal Neoplasms/diagnosis*
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Early Detection of Cancer
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Feces
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Hemoglobins/analysis*
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Humans
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Laboratories
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Occult Blood
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Sensitivity and Specificity
8.Significance of detection of biomarker fecal bile acids in the diagnosis and treatment of childhood Henoch-Schönlein purpura.
Hong-Wei HU ; Jiang DUAN ; Bo ZHAO ; Jing-Jing XIONG ; Mei LIU ; Jing-Jing CUI ; Xiao-Fei JI ; Ting-Ting ZHANG ; Li-Zhi ZHANG ; Yong-Kun HUANG
Chinese Journal of Contemporary Pediatrics 2016;18(6):517-521
OBJECTIVETo investigate the changes and clinical significance of biomarker fecal bile acids (BA) in children with Henoch-Schönlein purpura (HSP).
METHODSNineteen children with HSP and twenty-seven healthy children were enrolled in this study. The stool samples were obtained at the acute and remission phases. Fecal BA levels were measured by high performance liquid chromatography mass spectrometry (HPLC-MS).
RESULTSThe fecal cholic acid level in the HSP remission group was significantly higher than in the HSP acute group and the healthy control group (P<0.016). The fecal chenodeoxycholic acid level in the HSP remission group was significantly higher than in the healthy control group (P<0.016). The levels of fecal secondary colonic bile acids, deoxycholic acid and lithocholic acid, in the HSP acute and remission groups were significantly lower than in the healthy control group(P<0.05, P<0.016 respectively). No significant differences were found in the levels of fecal urosodeoxycholic acid among the three groups (P>0.05).
CONCLUSIONSFecal secondary colonic bile acids, deoxycholic acid and lithocholic acid, are in decrease in children with HSP at the acute stage, which may be involved in the pathogenesis and treatment outcomes of HSP.
Bile Acids and Salts ; analysis ; Biomarkers ; analysis ; Child ; Feces ; chemistry ; Female ; Humans ; Male ; Purpura, Schoenlein-Henoch ; diagnosis ; therapy
9.Detection of fecal peroxisome proliferator-activated receptor delta and cyclooxygenase 2 mRNA in screening of colorectal cancer.
Huangdao YU ; Lie YANG ; Fangfang YAN ; Yuan LI ; Xiaofeng SUN ; Zongguang ZHOU
Chinese Journal of Gastrointestinal Surgery 2014;17(1):26-30
OBJECTIVETo evaluate the detection of fecal PPAR-delta and COX-2 mRNA in screening of colorectal cancer.
METHODSFifty-one patients with colorectal cancer and 21 healthy controls were included in this study. Total RNA was isolated from the fecal samples. Expression of PPAR-delta and COX-2 mRNA was determined by RT-PCR, and its value in screening of colorectal cancer was investigated.
RESULTSThe positive detection rate of fecal PPAR-delta and COX-2 mRNA in colorectal cancer patients was significantly higher than that in healthy controls. In 47 colorectal cancer patients and 19 healthy controls with positive fecal ACTB mRNA expression, the sensitivity of fecal PPAR-delta mRNA, COX-2 mRNA and PPAR-delta mRNA plus COX-2 mRNA detection in diagnosing colorectal cancer was 76.6%(36/47), 80.9%(38/47) and 91.5%(43/47) respectively; the specificity was 63.2%(12/19), 84.2%(16/19) and 89.5%(17/19) respectively.
CONCLUSIONThe combination detection of fecal PPAR-delta and COX-2 mRNA is effective in screening human colorectal cancer and is better than detection of single marker alone.
Aged ; Case-Control Studies ; Colorectal Neoplasms ; diagnosis ; Cyclooxygenase 2 ; analysis ; Early Detection of Cancer ; Feces ; chemistry ; Female ; Humans ; Male ; Middle Aged ; PPAR delta ; analysis ; RNA, Messenger ; analysis
10.Experimental Study on Fat Absorption (I131-Triolein) from the Parasite Infected Intestine.
Yang Ok PARK ; Seung Bong AN ; Chin Thack SOH
Yonsei Medical Journal 1967;8(1):27-32
The effects of Clonorchis sinensis, Hymenolepis nana and Toxocara canis infection on fat absorption in the intestine were studied. For this purpose, I131-Triolein was given to the animals which were infected by those parasites, and amounts of the excretion in the feces were counted and following results were obtained. In the Clonorchis sinensis infected group, the excretion of Triolein was increased to 4. 10~4.49% compared with that of the control group. In the Hymenolepis nana infected group, the excretion of Triolein was increased to 4~5% compared with that of control group. In the Toxocara canis infected group, the excretion was about twice as much as that of the control group. It is concluded that parasite infection in digestive system diminishes fat absorption in gastrointestinal tract of the host.
Animals
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Fats/*metabolism
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Feces/analysis
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*Intestinal Absorption
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Intestinal Diseases, Parasitic/*metabolism
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Iodine Radioisotopes/diagnostic use
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Rats
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Triolein/diagnostic use