1. Study on genetic diversity and genetic variation law of Polygonatum cyrtonema
Chinese Traditional and Herbal Drugs 2020;51(10):2835-2841
Objective: To study the genetic diversity and geographical distribution of Polygonatum cyrtonema resources. Methods: ISSR technique was applied to analyze 118 individuals from 20 P. cyrtonema provenances in six provinces, including Anhui, Jiangxi, Fujian, Hunan, Hubei, and Zhejiang. Results: The results showed that 130 clear bands were amplified by 16 primers with 123 polymorphic bands and the average percentage of polymorphic loci (PPL) was 94.62%, PPL within provenances was 33.85%-60.00%. Nei's genetic diversity index (He) was 0.183 8, Shannon's information index (I) was 0.267 4 and gene differentiation index (Gst) was 0.529 3. There were abundant genetic diversities existing in wild resources of P. cyrtonema. The UPGMA clustering analysis revealed that individuals from the same provenance were almost clustered together firstly, explaining that the genetic differentiation among different provenances was higher than those within provenances. When genetic similarity (GS) was 0.61, 118 germplasms can be divided into four categories, including Wuyi Mountains, Wuling and Luoxiao Mountains, Dabie Mountains, Donggong, and Tianmu Mountains. Conclusion: P. cyrtonema has high genetic diversity, genetic variation was closely related to mountains, and the isolation of plains and water areas between mountains was one of the main causes of genetic differentiation among groups. This study had essentially theoretical value and practical significance for the protection of the germplasm resources and the breeding of the species.
2.Advances in gene editing and natural product synthesis of Rhodotorula toruloides.
Qidou GAO ; Yaqi DONG ; Ying HUANG ; Yijuan LIU ; Xiaobing YANG
Chinese Journal of Biotechnology 2023;39(6):2313-2333
Rhodotorula toruloides is a non-conventional red yeast that can synthesize various carotenoids and lipids. It can utilize a variety of cost-effective raw materials, tolerate and assimilate toxic inhibitors in lignocellulosic hydrolysate. At present, it is widely investigated for the production of microbial lipids, terpenes, high-value enzymes, sugar alcohols and polyketides. Given its broad industrial application prospects, researchers have carried out multi-dimensional theoretical and technological exploration, including research on genomics, transcriptomics, proteomics and genetic operation platform. Here we review the recent progress in metabolic engineering and natural product synthesis of R. toruloides, and prospect the challenges and possible solutions in the construction of R. toruloides cell factory.
Gene Editing
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Metabolic Engineering
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Rhodotorula/metabolism*
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Lipids
3.Herbal textual research on Chinese medicine "Huangjing" (Polygonati Rhizoma)and some enlightenments.
China Journal of Chinese Materia Medica 2018;43(3):631-636
To clarify the change and development of the original plants, medicinal organs, traditional functions, resource distribution of "Huangjing"(Polygonati Rhizome), a traditional Chinese medicine, we investigated Polygonatum species on the ancient Chinese herbal texts. The name of "Nüwei" was first carried out in the book of Sheng Nong's Herbal Classic. Its effects included two aspects: one was similar to "Weirui"(Polygonati Odorati Rhizome, "Yuzhu"), that was tonifying, nourishing one's vitality, removing wind and dampness, settling five organs, making body lightness, keeping longevity and not being hungry; the second was alike to "Huangjing" recorded in the book of Ming Yi Bie Lu(Appendant Records of Famous Physicians). Specifically, "Weirui" possesses the therapeutic effect of "Nüwei", while "Huangjing" possesses the tonic effect of " Nüwei". Thereafter, the following ancient Chinese herbal texts kept those two names and function records. Accordingly, we hold the point of view that "Huangjing" was first carried out in the book of Sheng Nong's Herbal Classic in the synonym of "Nüwei". "Yuzhu" included the "Huangjing" in ancient herbal text before Qing Dynasty, that was further confirmed by the research on change and development of the original plants. The identification between "Yuzhu" and "Huangjing" was based on the shape of rhizome and size before early Tang Dynasty. The shape was a key character and used up to now, but size was not reasonable. The opposite phyllotaxy was an important character of authentic "Huangjing" from Tang to Qing Dynasty. The seedling of Polygonatum sibiricum and P. kingianum, the adult plant of P. cyrtonema with alternate leaves were misused as "Yuzhu"("Nüwei" and "Weirui") at that time. Therefore, both "Yuzhu" and "Huangjing" should be used as key words during the search of ancient prescriptions and development of new drugs and health foods. The leaves, flowers, fruits and seedlings could be used as food or medicine other than the rhizomes in ancient China, but they haven't been developed in modern times. The culture of "Huangjing" had a long history starting with Tang Dynasty, which was recorded in Tang poetry. Then in Ming Dynasty, the culture method was described in Compendium of Materia Medica, that was cutting the rhizomes into 2 feet, planting sparsely(they would be grown densely in the next year), or sowing the seeds. The harvesting and processing were first recorded in Ming Yi Bie Lu: "harvest the roots in February, dry in the shade". Then the processing method was changed to "steaming and drying in the sun, repeatedly for nine times" in Shi Liao Ben Cao(Dietetic Materia Medica) and "harvesting in August as well" in Ben Cao Tu Jing(Commentaries on the Illustrations). No breakthrough has been taken in the breeding of cultivars and key cultivation technologies yet. As to the geo-authentic habitats, Mount Songshan and Maoshan were firstly recorded as the best producing areas of "Huangjing" in Ben Cao Tu Jing. But Maoshan, Jiangsu province and Mount Songshan, Henan province, are not main producing areas in modern China. Consequently, the plantation plan of Polygonati Rhizome needs further study.
China
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Drugs, Chinese Herbal
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Herbals as Topic
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Materia Medica
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Medicine, Chinese Traditional
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Polygonatum
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chemistry
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Rhizome
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chemistry
4.Progress in research of relationship between heavy metal exposure and cardiovascular disease.
F LU ; F ZHAO ; J Y CAI ; L LIU ; X M SHI
Chinese Journal of Epidemiology 2018;39(1):102-106
Heavy metal is one of pollutants existed widely in the environment, its relationship with cardiovascular disease has attracted more and more attention. In this review, the concentrations of heavy metals, including lead, cadium and asenic, in the body from several national surveillance networks and the epidemiological studies on the effects of the exposure of three heavy metals on cardiovascular system were summarized. It is suggested to strengthen nationwide surveillance for body concentrations of heavy metals in general population in order to provide baseline data for quantitative evaluation of the risk of heavy metal exposure on cardiovascular disease.
Cadmium
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Cardiovascular Diseases/chemically induced*
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Environmental Exposure/adverse effects*
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Environmental Pollutants/toxicity*
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Epidemiologic Studies
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Humans
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Lead/toxicity*
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Metals, Heavy/toxicity*
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Neoplasms
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Research/trends*
5.Advances in stress response of DNA binding with one finger transcription factor family genes in graminaceous plants.
Wenting LIU ; Tiantian MA ; Chunju ZHOU ; Xiao ZANG ; Langjin LI ; Baojun ZHANG ; Wei DU ; Weili ZHANG ; Kunming CHEN
Chinese Journal of Biotechnology 2016;32(5):541-553
Transcription factor is a key trans-acting factor to mediate stress response by regulating gene expression. Plants have developed a series of mechanisms to modulate development, stress response, signaling and disease resistance at transcription level. DNA binding with one finger (DOF), containing one C₂-C₂ zinc finger domain, is a special plant transcription factor. Specifically, the conserved domain at N-terminus of DOF has multiple functions, including interacting with DNA and protein, which could be involved in plant development and stress response. Although many DOF family genes are characterized in plant stress response, it is not clear if DOF genes have functions in cereal plants. In the present paper, the role of DOF family genes on cereal plants were discussed based on a comprehensive phylogenetic relationship analysis, expression profiles in different tissues and various environmental conditions. The results obtained here will provide an important reference for further understanding the mechanism of gramineous crops in stress resistance.
DNA-Binding Proteins
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metabolism
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Gene Expression Regulation, Plant
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Phylogeny
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Plant Proteins
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metabolism
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Plants
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genetics
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Transcription Factors
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metabolism
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Zinc Fingers
6. Biochemical Activity of PIF1 Helicase from Thermophilic Bacteria
Dan LI ; Hai-Hong LI ; Yang-Xue DAI ; Na-Nv LIU ; Xi-Miao HOU ; Xu-Guang XI
Chinese Journal of Biochemistry and Molecular Biology 2021;37(9):1220-1232
Petite integration frequency 1 (PIF1) helicases are ubiquitous enzymes which play vital roles in nearly all DNA metabolic processes. In recent years, the biochemical activity and three-dimensional structure of several PIF1 helicases have been reported, but there are few reports on the PIF1 helicase of bacteria living in extreme environments. In this paper, a series of biochemical and biophysical techniques were used to study the Thermodesulfovibrio yellowstonii PIF1 (Ty.PIF1) helicase in many aspects. Ty. PIF1 was obtained with a purity of over 90% and good uniformity using the prokaryotic expression and purification system. Ty.PIF1 is a monomer with a calculated molecular weight of 60 kD in solution. Ty. PIF1 has high thermal stability. The secondary structure remains stable when the temperature is below 65 ℃, and the secondary structure changes only when the temperature is above 70 ℃. The optimal unwinding temperature of Ty.PIF1 in vitro is 45 ℃, which is not the optimal temperature for the survival of thermodesulfovibrio yellowstonii. It indicates that when Ty.PIF1 exerts its enzymatic activity in vivo, it may require the participation of other cofactors. Ty.PIF1 can exert unwinding activity in a wide temperature range (20-55 ℃), and the presence of enzyme activity at 55 ℃ indicates that Ty.PIF1 has heat-resistant properties. Ty.PIF1 prefers to bind to substrates containing ssDNA, but there is certain requirement for the length of the ssDNA, which is at least 4 nt in length. Ty.PIF1 can also bind to the G
7.Expression and characterization of a keratinase encoding gene gm2886 in Streptomyces pactum ACT12 strain.
Yiming MA ; Xin KE ; Xiaoxia LI ; Weixue SHU ; Wenhan YANG ; Yayong LIU ; Xia YAN ; Lianghui JIA ; Hua YAN
Chinese Journal of Biotechnology 2017;33(12):1968-1978
By bioinformatics analysis, a putative keratinase gene gm2886 (Accession number: KY368946) was discovered in the genome of a feather-degrading strain, Streptomyces albidoflavus Fea-10. gm2886 was ligated into integrative Escherichia coli-Streptomyces shuttle vector pSET152 under the promoter PermE and added with C-terminal His-tag. The expression vector was transformed into Streptomyces pactum ACT12 by conjugal transfer and the recombinant protein GM2886-His6 was detected in fermentation broth. GM2886-His6 was purified and characterized. Its size was nearly 36 kDa. GM2886-His6 showed proteolytic activity towards a variety of substrates and could even degrade insoluble substrates, such as azure keratin and chicken feathers. The optimal pH and temperature of GM2886-His6 for proteolysis of casein was pH 10.0 and 50 ℃, respectively. The enzyme activity was inhibited by PMSF, but not EDTA, indicating that GM2886-His6 was a serine proteinase. Our results laid the foundation for the research of the molecular biological mechanism on feather-degrading and for the further utilization of Fea-10.
8.Agrobacterium-mediated genetic transformation of secondary somatic embryos in alfalfa.
Wenting LIU ; Qimei DUAN ; Jingling LIU ; Yanfang SUN
Chinese Journal of Biotechnology 2012;28(2):203-213
We describe a genetic transformation method of secondary somatic embryogenesis in alfalfa through cotyledon-stage somatic embryos of alfalfa infected by Agrobacterium strain GV3101. The Agrobacterium strain GV3101 contained binary vector pCAMBIA2301 that had gus gene as reporter and npt II gene as selectable marker. The infected primary embryos were induced through series of medium under 75 mg/L kanamycin selection. We obtained the transgenic alfalfa plants. Then, GUS expression in different tissue of transgenic alfalfa was tested by GUS histochemical analysis. Further, the stable integration and transformation efficiency were tested by polymerase chain reaction and Southern blotting hybridization. The result showed that GUS expression was different in different organs of transgenic alfalfa; the copy number of integrated npt II gene was from 1 to 4; the transformation efficiency via primary somatic embryogenesis was 65.82%.
Agrobacterium
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genetics
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Medicago sativa
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embryology
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genetics
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physiology
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Plant Somatic Embryogenesis Techniques
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Plants, Genetically Modified
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embryology
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genetics
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Tissue Culture Techniques
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Transformation, Genetic
9.Seroprevalence and risk factors for Toxoplasma gondii in sheep and goats in Jinzhou, Northeastern China
Xu, P., Li, X., Tang, F., Liu, Y.H., Kou, X., Zhao, M.L., Li, B., Guo, L., Liu, X.G., Zhao, Q.
Tropical Biomedicine 2015;32(3):563-567
In the present study, serum samples from 402 sheep and 216 goats were collected
from 5 counties in Jinzhou from August to October 2012 and antibodies to Toxoplasma gondii
were detected by modified agglutination test (MAT). Overall, 104 (16.8%) had antibodies to T.
gondii with antibody titres of 1:25 to 1:800. Seropositive samples were distributed in all the
5 counties and seroprevalences of T. gondii varied significantly with flock size, age and
rearing system, but not with breed, gender and farm location. The seroprevalences in small
farms (18.3%, 95/518, 95% confidence interval [CI], 15.0-21.7%) were statistically higher than
that in large farms (9%, 9/100, 95% CI, 3.4-14.6%) (P < 0.05), older animals were statistically
higher than that in younger animals (P < 0.01). The prevalence in extensively and semiintensively
raised samples was statistically higher than that in intensively raised animals (P
< 0.01). Small flock size and extensive rearing system are the potential risk factors for the
prevalence of Toxoplasma infection in sheep and goats in Jinzhou. This is the first report of
T. gondii infection in sheep and goats in Jinzhou, northeastern China, and of an association of
seropositivity to T. gondii and the risk factors.
10.Study on early warning threshold values for 7 common communicable diseases in Gansu province, 2016.
Y CHENG ; X F LIU ; L MENG ; X T YANG ; D P LIU ; K F WEI ; X J JIANG ; H X LIU ; Y H ZHENG
Chinese Journal of Epidemiology 2018;39(3):352-356
Objective: To optimize the warning threshold values of common communicable diseases in Gansu province, and improve the early warning effect. Method: An early warning model was set up for influenza, scarlet fever, other infectious diarrheal diseases, dysentery, typhoid and paratyphoid, viral hepatitis type E and hand foot and mouth disease (HFMD) respectively in Gansu by using the moving percentile method and cumulative sum method. By calculating the sensitivity, specificity, predictive value of positive test, predictive value of negative test, Youden' index and receiver-operating characteristic curve, the optimum early warning threshold values for communicable diseases in Gansu were selected. Results: The optimum early warning boundary values of influenza, scarlet fever, other infectious diarrheal diseases, dysentery, typhoid and paratyphoid, and viral hepatitis type E were P(90), P(80), P(95), P(90), P(80) and P(90) respectively. The optimum early warning parameters of HFMD were k=1.2, H=5σ. Under the optimum early warning boundary values/parameters, the early warning sensitivities of influenza, scarlet fever, other infectious diarrheal diseases, dysentery, typhoid and paratyphoid, viral hepatitis type E and HFMD were 86.67%, 100.00%, 91.67%, 100.00%, 100.00%, 100.00% and 100.00%, the specificities were 86.49%, 62.22%, 75.00%, 100.00%, 97.92%, 89.13% and 74.47%. The predictive values of positive test were 72.22%, 29.17%, 52.38%, 100.00%, 80.00%, 54.55% and 29.41%, and the predictive values of negative test were 94.12%, 100.00%, 96.77%, 100.00%, 100.00%, 100.00% and 100.00%, and the Youden' indexes were 0.73, 0.62, 0.67, 1.00, 0.98,0.89 and 0.74. Receiver-operating characteristic curve showed that the values/parameters of this warning boundary were the points closest to the upper left of the coordinate diagram. Conclusion: The early warning thresholds of influenza, other infectious diarrheal diseases, dysentery and hepatitis E in Gansu may be raised appropriately and the early warning parameters of HFMD need to be adjusted to improve the effectiveness of early warning.
China
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Communicable Disease Control/methods*
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Communicable Diseases/epidemiology*
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Disease Notification
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Disease Outbreaks/prevention & control*
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Humans
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Models, Theoretical
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Population Surveillance/methods*