1.Bloodstream infections with O16-ST131 and O25b-ST131: molecular epidemiology, phylogenetic analysis and antimicrobial resistance.
Yiming ZHONG ; Xiaohe ZHANG ; Wenen LIU ; Fang YANG ; Qun YAN ; Qingxia LIU ; Yanming LI ; Hongling LI ; Mingxiang ZOU
Journal of Southern Medical University 2018;38(12):1521-1526
OBJECTIVE:
To investigate the phylogenetics and prevalence of bloodstream infections with ST131, the antimicrobial resistance profiles of the pathogens, and the clinical features.
METHODS:
Non-duplicate isolates were collected from 144 patients with bloodstream infections in our hospital between January and December, 2016.The phylogenetic groups of the isolates were analyzed using multiplex PCR, and O serotyping of ST131 strains was performed by allele-specific PCR.The clinical characteristics of the 144 patients were analyzed to define the differences in the clinical features between patients with ST131 infection and those with non-ST131 infection.Antibiotic susceptibility of the isolates was determined using the Vitek 2 compact system.
RESULTS:
The phylogenetic group analysis showed a domination by group B2 (41.0%[59/144]), followed by group F, group B1 and group E, which accounted for 16.7%(24/144), 13.9%(20/144), and 13.2% (19/144), respectively.Nine strains (6.3%) of were identified to be ST131 strains, among which 8 were O25b-B2-ST131 strains and 1 was O16-B2-ST131 strain.Of the 9 cases of ST131 infection, 7(77.8%) were found to occur in a nosocomial setting.The demographic characteristics and clinical features of the ST131-infected patients were similar to those of non-ST131-infected patients.ST131 strains were sensitive to piperacillin/tazobactam, imipenem, ertapenem, and amikacin, but showed high resistance rates to cefazolin, ceftriaxone, ciprofloxacin, levofloxacin, gentamicin, and trimethoprim/ sulfamethoxazole (all over 50%).The positivity rate of ESBLs in the ST131 strains was 77.8%, and the multidrug resistance rate reached 88.9%, which was higher than that of non-ST131 isolates, but the difference was not statistically significant.
CONCLUSIONS
The most common phylogenetic groups of isolates from patients with bloodstream infections are group B2 and F, and the positivity rate of ST131 is low.We for the first time detected O16-ST131 in patients with blood-borne infections in China.The clinical features of ST131-infected patients are similar to those of non-ST131-infected patients.The positivity rate of ESBLs and the multidrug resistance rate are high in ST131 strains, which may raise concerns in the future.
Anti-Bacterial Agents
;
therapeutic use
;
Bacteremia
;
drug therapy
;
epidemiology
;
microbiology
;
China
;
Drug Resistance, Bacterial
;
Escherichia coli
;
classification
;
drug effects
;
genetics
;
Escherichia coli Infections
;
drug therapy
;
epidemiology
;
microbiology
;
Genotype
;
Humans
;
Microbial Sensitivity Tests
;
Molecular Epidemiology
;
Phylogeny
;
Species Specificity
2.Clinical analysis of 22 cases community-acquired Pseudomonas aeruginosa urinary tract infection.
Xiao-Hong FU ; Wen ZHOU ; Xue-Mei ZHANG ; Yi-Bing YIN ; Chun-Mei JING ; Lan LIU ; Jie ZHAO
Chinese Journal of Pediatrics 2013;51(4):298-301
OBJECTIVETo study the characteristics of community-acquired urinary tract infections (CAUTIs) in children, analyze the risk factors and the susceptibility of antibiotics, thus to provide references to the diagnosis and medication of Pseudomonas aeruginosa (PA)-CAUTIs. Mothod Totally 22 cases of PA-CAUTIs were selected in one hospital from Jan, 2006 to Jan, 2012, their clinical information, laboratory results and radiological images were collected, and were compared with the CAUTIs cased by E. coli of those randomly selected over the same period.
RESULTIn those 22 cases with PA-CAUTIs, the mean value of protein level was (32.25 ± 13.81) mg/ml, 19 of them were hospitalized, 6 had urinary operation history, 7 of them had long-term usage of glucocorticoids or immunosuppressive agents, and 20 had underlying diseases. A total of 22 children with 26 PA-CAUTIs episodes were compared to E. coli-CAUTIs. Compared with E. coli-CAUTIs patients, children with PA-CAUTIs more often presented with a lower albumin (P = 0.017), a history of urinary operation(P = 0.03), more cases had a history of urinary operation (P = 0.03), a long-term usage of glucocorticoids or immunosuppressive medication (P = 0.044). Through multivariate logistic regression of variables that were significant in univariate analysis (with hospitalizations, long-term usage of glucocorticoids or immunosuppressive, albumin, underlying disease and urinary operation histories), and it turned out that underlying diseases (odds ratio 8.500, 95% CI 1.513 - 47.761, P = 0.037) and with urinary operation histories (odds ratio 6.196, 95% CI 1.120 - 34.273, P = 0.037) were proved as the independent risk factors for PA-CAUTIs. Those PA bacterial strains had a 36.36% resistance rate to piperacillin, aztreonam and gentamicin, a 31.82% resistance rate to cefepime and ceftazidime, while the resistance rate (4.55%) to carbapenem antibiotics was relatively low, only to bacillosporin all the strains were sensitive.
CONCLUSIONUnderlying diseases and the urinary operation histories are the independent risk factors of the occurrence of PA-CAUTIs, carbapenem antibiotics and bacillosporin can be considered as the drugs of choice for its treatment.
Anti-Bacterial Agents ; therapeutic use ; Case-Control Studies ; Child ; Child, Preschool ; Community-Acquired Infections ; drug therapy ; epidemiology ; pathology ; Drug Resistance, Bacterial ; Escherichia coli ; drug effects ; Escherichia coli Infections ; drug therapy ; epidemiology ; pathology ; Female ; Humans ; Male ; Polymyxins ; therapeutic use ; Pseudomonas Infections ; drug therapy ; epidemiology ; pathology ; Pseudomonas aeruginosa ; drug effects ; Risk Factors ; Urinary Tract Infections ; drug therapy ; epidemiology ; pathology
3.Epidemiology of Escherichia coli and Klebsiella pneumoniae bloodstream infections in a general hospital in Singapore: a retrospective cohort study.
Amarasinghe Arachchige Don Nalin SAMANDIKA SAPARAMADU ; Lasantha RATNAYAKE
Singapore medical journal 2023;64(11):700-706
Humans
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Escherichia coli
;
Klebsiella pneumoniae
;
Retrospective Studies
;
Hospitals, General
;
Singapore/epidemiology*
;
Escherichia coli Infections/epidemiology*
;
Sepsis/drug therapy*
;
beta-Lactamases
;
Anti-Bacterial Agents/therapeutic use*
;
Bacteremia/drug therapy*
;
Microbial Sensitivity Tests
4.Clinical and Molecular Epidemiology of Community-Onset Bacteremia Caused by Extended-Spectrum beta-Lactamase-Producing Escherichia coli over a 6-Year Period.
Cheol In KANG ; Min Kyeong CHA ; So Hyun KIM ; Kwan Soo KO ; Yu Mi WI ; Doo Ryeon CHUNG ; Kyong Ran PECK ; Nam Yong LEE ; Jae Hoon SONG
Journal of Korean Medical Science 2013;28(7):998-1004
Although extended-spectrum beta-lactamase-producing Escherichia coli (ESBL-EC) has emerged as a significant community-acquired pathogen, there is little epidemiological information regarding community-onset bacteremia due to ESBL-EC. A retrospective observational study from 2006 through 2011 was performed to evaluate the epidemiology of community-onset bacteremia caused by ESBL-EC. In a six-year period, the proportion of ESBL-EC responsible for causing community-onset bacteremia had increased significantly, from 3.6% in 2006 to 14.3%, in 2011. Of the 97 clinically evaluable cases with ESBL-EC bacteremia, 32 (33.0%) were further classified as healthcare-associated infections. The most common site of infection was urinary tract infection (n=35, 36.1%), followed by biliary tract infections (n=29, 29.9%). Of the 103 ESBL-EC isolates, 43 (41.7%) produced CTX-M-14 and 36 (35.0%) produced CTX-M-15. In the multilocus sequence typing (MLST) analysis of 76 isolates with CTX-M-14 or -15 type ESBLs, the most prevalent sequence type (ST) was ST131 (n=15, 19.7%), followed by ST405 (n=12, 15.8%) and ST648 (n=8, 10.5%). No significant differences in clinical features were found in the ST131 group versus the other group. These findings suggest that epidemic ESBL-EC clones such as CTX-M-14 or -15 type ESBLs and ST131 have disseminated in community-onset infections, even in bloodstream infections, which are the most serious type of infection.
Aging
;
Bacteremia/drug therapy/*epidemiology
;
Biliary Tract Diseases/epidemiology/microbiology
;
Cephalosporin Resistance/genetics
;
Cephalosporins/therapeutic use
;
Community-Acquired Infections/*epidemiology/microbiology
;
Escherichia coli/isolation & purification/metabolism
;
Escherichia coli Infections/drug therapy/*epidemiology
;
Female
;
Humans
;
Male
;
Microbial Sensitivity Tests
;
Molecular Epidemiology
;
Multilocus Sequence Typing
;
Prevalence
;
Retrospective Studies
;
Urinary Tract Infections/epidemiology/microbiology
;
beta-Lactamases/*metabolism
5.Causative Pathogens of Febrile Neutropaenia in Children Treated for Acute Lymphoblastic Leukaemia.
Joyce Cm LAM ; Jie Yang CHAI ; Yi Ling WONG ; Natalie Wh TAN ; Christina Tt HA ; Mei Yoke CHAN ; Ah Moy TAN
Annals of the Academy of Medicine, Singapore 2015;44(11):530-534
INTRODUCTIONTreatment of acute lymphoblastic leukaemia (ALL) using intensive chemotherapy has resulted in high cure rates but also substantial morbidity. Infective complications represent a significant proportion of treatment-related toxicity. The objective of this study was to describe the microbiological aetiology and clinical outcome of episodes of chemotherapy-induced febrile neutropaenia in a cohort of children treated for ALL at our institution.
MATERIALS AND METHODSPatients with ALL were treated with either the HKSGALL93 or the Malaysia-Singapore (Ma-Spore) 2003 chemotherapy protocols. The records of 197 patients who completed the intensive phase of treatment, defined as the period of treatment from induction, central nervous system (CNS)-directed therapy to reinduction from June 2000 to January 2010 were retrospectively reviewed.
RESULTSThere were a total of 587 episodes of febrile neutropaenia in 197 patients, translating to an overall rate of 2.98 episodes per patient. A causative pathogen was isolated in 22.7% of episodes. An equal proportion of Gram-positive bacteria (36.4%) and Gram-negative bacteria (36.4%) were most frequently isolated followed by viral pathogens (17.4%), fungal pathogens (8.4%) and other bacteria (1.2%). Fungal organisms accounted for a higher proportion of clinically severe episodes of febrile neutropaenia requiring admission to the high-dependency or intensive care unit (23.1%). The overall mortality rate from all episodes was 1.5%.
CONCLUSIONFebrile neutropaenia continues to be of concern in ALL patients undergoing intensive chemotherapy. The majority of episodes will not have an identifiable causative organism. Gram-positive bacteria and Gram-negative bacteria were the most common causative pathogens identified. With appropriate antimicrobial therapy and supportive management, the overall risk of mortality from febrile neutropaenia is extremely low.
Candidiasis ; epidemiology ; Chemotherapy-Induced Febrile Neutropenia ; epidemiology ; microbiology ; Child ; Cohort Studies ; Escherichia coli Infections ; epidemiology ; Gram-Negative Bacterial Infections ; epidemiology ; Gram-Positive Bacterial Infections ; epidemiology ; Humans ; Influenza, Human ; epidemiology ; Klebsiella Infections ; epidemiology ; Mycoses ; epidemiology ; Precursor Cell Lymphoblastic Leukemia-Lymphoma ; drug therapy ; Pseudomonas Infections ; epidemiology ; Retrospective Studies ; Singapore ; epidemiology ; Staphylococcal Infections ; epidemiology ; Virus Diseases ; epidemiology
6.Analysis of pathogenic bacteria in cirrhotic patients complicated with bacterial infection in a tertiary hospital in Xinjiang.
Dan TANG ; Bieerding MAIHEBUBA ; Xiao Feng SUN ; Xiao Bi LU
Chinese Journal of Hepatology 2022;30(8):885-888
Objective: To understand the species, distribution, and extent of drug resistance of pathogenic bacteria in patients with liver cirrhosis combined with bacterial infection in a tertiary hospital in Xinjiang. Methods: 1 271 cases with liver cirrhosis combined with infection were analyzed retrospectively for pathogenic bacterial species and drug resistance condition in different bacterial strain. Results: Among the 1 271 cases with liver cirrhosis, 480 were combined with infection, and the infection rate was 37.8%. The majority of infected patients had decompensated cirrhosis (438 cases). Peritoneum (327 cases, 60.8%) was the common infection site, followed by lungs (16.9%). 343 strains of pathogens were isolated from 480 infected cases, of which 289 strains were among the top 10 common distinct bacteria, accounting for 76.5% and 23.5% of Gram-negative and positive bacteria. The first top three strains were Escherichia coli. (33.2%), Klebsiella pneumoniae (11.4%), and Enterococcus faecium (11.1%), and there were differences in the drug resistance rates of each strain. Conclusion: In a tertiary hospital in Xinjiang, patients with decompensated cirrhosis have a high rate of bacterial infection. The pathogenic bacteria are diverse, mainly Gram-negative bacteria; however, the infection rate of Gram-positive bacteria such as Enterococcus is gradually increasing. Additionally, according to the bacterial properties, they are divided into four categories: Enterobacter, Enterococcus, glucose non-fermenting bacteria and Staphylococcus, and it is found that even the same species of bacteria have different drug resistance rates.
Anti-Bacterial Agents/therapeutic use*
;
Bacteria
;
Bacterial Infections/epidemiology*
;
Drug Resistance, Bacterial
;
Escherichia coli
;
Glucose
;
Humans
;
Liver Cirrhosis/drug therapy*
;
Microbial Sensitivity Tests
;
Retrospective Studies
;
Tertiary Care Centers
7.Surveillance of antimicrobial susceptibility of urinary pathogens in a tertiary care hospital.
Subhash C ARYA ; Nirmala AGARWAL ; Shekhar AGARWAL
Singapore medical journal 2007;48(3):270-author reply 271
Anti-Bacterial Agents
;
therapeutic use
;
Ceftazidime
;
therapeutic use
;
Cross Infection
;
drug therapy
;
epidemiology
;
microbiology
;
Escherichia coli Infections
;
epidemiology
;
Gentamicins
;
therapeutic use
;
Humans
;
India
;
epidemiology
;
Klebsiella Infections
;
epidemiology
;
Microbial Sensitivity Tests
;
Proteus Infections
;
epidemiology
;
Pseudomonas Infections
;
epidemiology
;
Retrospective Studies
;
Urinary Tract Infections
;
drug therapy
;
epidemiology
;
microbiology
8.Urinary tract infections in adults.
Chee Wei TAN ; Maciej Piotr CHLEBICKI
Singapore medical journal 2016;57(9):485-490
A urinary tract infection (UTI) is a collective term for infections that involve any part of the urinary tract. It is one of the most common infections in local primary care. The incidence of UTIs in adult males aged under 50 years is low, with adult women being 30 times more likely than men to develop a UTI. Appropriate classification of UTI into simple or complicated forms guides its management and the ORENUC classification can be used. Diagnosis of a UTI is based on a focused history, with appropriate investigations depending on individual risk factors. Simple uncomplicated cystitis responds very well to oral antibiotics, but complicated UTIs may require early imaging, and referral to the emergency department or hospitalisation to prevent urosepsis may be warranted. Escherichia coli remains the predominant uropathogen in acute community-acquired uncomplicated UTIs and amoxicillin-clavulanate is useful as a first-line antibiotic. Family physicians are capable of managing most UTIs if guided by appropriate history, investigations and appropriate antibiotics to achieve good outcomes and minimise antibiotic resistance.
Adult
;
Aged
;
Amoxicillin
;
administration & dosage
;
Amoxicillin-Potassium Clavulanate Combination
;
Anti-Bacterial Agents
;
Clavulanic Acid
;
administration & dosage
;
Cystitis
;
drug therapy
;
Drug Resistance, Microbial
;
Escherichia coli
;
Escherichia coli Infections
;
drug therapy
;
epidemiology
;
Female
;
Humans
;
Incidence
;
Male
;
Middle Aged
;
Primary Health Care
;
Risk Factors
;
Urinary Tract Infections
;
drug therapy
;
epidemiology
9.Antibiotic prophylaxis with intravenous ceftriaxone and fluoroquinolone reduces infectious complications after transrectal ultrasound-guided prostatic biopsy.
Chunwoo LEE ; Dalsan YOU ; In Gab JEONG ; Jun Hyuk HONG ; Myung Soo CHOO ; Hanjong AHN ; Tai Young AHN ; Choung Soo KIM
Korean Journal of Urology 2015;56(6):466-472
PURPOSE: To assess the rates of infectious complications before and after the change of prophylactic antibiotic regimens in prostate needle biopsy. MATERIALS AND METHODS: The records of 5,577 patients who underwent prostate needle biopsy at Asan Medical Center between August 2005 and July 2012 were retrospectively reviewed. Group 1 (n=1,743) included patients treated between 2005 and 2009 with fluoroquinolone for 3 days, group 2 (n=2,723) included those treated between 2009 and 2012 with ceftriaxone once before the biopsy and fluoroquinolone before biopsy and continue therapy for 3 days, and group 3 (n=1,111) received the same treatment for more than 7 days after the biopsy. Univariable and multivariable logistic regression models addressed risk factors associated with infectious complication after prostate needle biopsy. RESULTS: Infectious complication after prostate needle biopsy developed in 18 (group 1), seven (group 2), and two patients (group 3) (p=0.001). In group 1, seven patients with infectious complication had positive blood cultures and harbored fluoroquinolone-resistant Escherichia coli, four had ceftriaxone susceptible isolates, and three had extended spectrum beta-lactamase-positive E. coli. Two patients in group 1 required intensive care because of septic shock. In multivariable analysis, the patients with combination of fluoroquinolone and ceftriaxone had significantly lower infectious complication rate than the fluoroquinolon alone (p=0.003). CONCLUSIONS: Antibiotic prophylaxis with ceftriaxone and fluoroquinolone before prostate needle biopsy decreased the risk of potentially serious infectious complications.
Adolescent
;
Adult
;
Aged
;
Aged, 80 and over
;
Antibiotic Prophylaxis/*methods
;
Biopsy, Needle/adverse effects/methods
;
Ceftriaxone/*therapeutic use
;
Cross Infection/epidemiology/etiology/*prevention & control
;
Drug Evaluation/methods
;
Drug Resistance, Bacterial
;
Drug Therapy, Combination
;
Escherichia coli/drug effects
;
Escherichia coli Infections/epidemiology/prevention & control
;
Fluoroquinolones/*therapeutic use
;
Humans
;
Incidence
;
Male
;
Middle Aged
;
Prostatic Neoplasms/*pathology
;
Republic of Korea/epidemiology
;
Retrospective Studies
;
Ultrasonography, Interventional
;
Young Adult
10.Increase of Ceftazidime- and Fluoroquinolone-Resistant Klebsiella pneumoniae and Imipenem-Resistant Acinetobacter spp. in Korea: Analysis of KONSAR Study Data from 2005 and 2007.
Kyungwon LEE ; Mi Ae LEE ; Chae Hoon LEE ; Jongwook LEE ; Kyoung Ho ROH ; Sunjoo KIM ; Jin Ju KIM ; Eunmi KOH ; Dongeun YONG ; Yunsop CHONG
Yonsei Medical Journal 2010;51(6):901-911
PURPOSE: Antimicrobial resistance monitoring could be a useful source of information for treating and controlling nosocomial infections. We analyzed antimicrobial resistance data generated by Korean Hospitals and by a commercial laboratory in 2005 and 2007. MATERIALS AND METHODS: Susceptibility data for 2005 and 2007 were collected from 37 and 41 hospitals, respectively, and from one commercial laboratory. Intermediate susceptibility was not included in the calculation of resistance rates. RESULTS: Methicillin-resistant Staphylococcus aureus (MRSA) (64%), third-generation cephalosporin-resistant Klebsiella pneumoniae (29%), fluoroquinolone-resistant Escherichia coli (27%), Pseudomonas aeruginosa (33%), and Acinetobacter spp. (48%), and amikacin-resistant P. aeruginosa (19%) and Acinetobacter spp. (37%) were prevalent in hospitals in 2007. A gradual increase of vancomycin-resistant Enterococcus faecium and imipenem-resistant Acinetobacter spp. was observed. Higher incidences of third-generation cephalosporin-resistant E. coli and K. pneumoniae and imipenem-resistant P. aeruginosa were found in the commercial laboratory than in the hospitals. CONCLUSION: Methicillin-resistant S. aureus, third-generation cephalosporin-resistant K. pneumoniae, and fluoroquinolone-resistant E. coli, P. aeruginosa and Acinetobacter spp. remain prevalent in Korea, while the incidence of vancomycin-resistant E. faecium and imipenem-resistant Acinetobacter spp. has increased gradually. The higher prevalences of third-generation cephalosporin-resistant E. coli and K. pneumoniae, and imipenem-resistant P. aeruginosa in the commercial laboratory are a new concern.
Acinetobacter/*metabolism
;
Bacterial Infections/drug therapy/*epidemiology
;
Ceftazidime/*pharmacology
;
Cross Infection/drug therapy/*epidemiology
;
*Drug Resistance, Bacterial
;
Escherichia coli/metabolism
;
Fluoroquinolones/*pharmacology
;
Humans
;
Imipenem/*pharmacology
;
Klebsiella Infections/*drug therapy
;
Klebsiella pneumoniae/*metabolism
;
Methicillin-Resistant Staphylococcus aureus/metabolism
;
Pseudomonas aeruginosa/metabolism
;
Republic of Korea
;
Vancomycin/pharmacology