1.Research progress and strategy on genetic improvement of Erigeron breviscapus.
Wei ZHANG ; Sheng-Chao YANG ; Guang-Hui ZHANG ; Bao SU
China Journal of Chinese Materia Medica 2013;38(14):2250-2253
Cultivation research and the research progress of genetic improvement of Erigeron breviscapus were been described. Some messures would be come forward, Such as developed the genetic reasearch, germplasm resources and breeding of E. breviscapus. Also it must be reasearch the biological basis, seed-breeding technology and some critical cultivation technique of E. breviscapus.
Breeding
;
methods
;
Erigeron
;
genetics
;
growth & development
;
Plants, Medicinal
;
genetics
;
growth & development
2.SSR information in Erigeron breviscapus transcriptome and polymorphism analysis.
Yin CHEN ; Cui-Ting LI ; Ni-Hao JIANG ; Sheng-Chao YANG ; Jun-Wen CHEN ; Jian-Wen YANG ; Guang-Hui ZHANG
China Journal of Chinese Materia Medica 2014;39(7):1220-1224
OBJECTIVEThe SSR information in the transcriptome of Erigeron breviscapus was analyzed in this study, in order to further develop new functional genes SSR markers laid a solid foundation.
METHODSSR loci were searched in all of 52,060 unigenes by using est_timmer. Perl program and SSR primers were designed by Primer3. Furthermore, 36 pairs of primers were randomly selected for the polymorphism analysis on 13 Erigeron breviscapus plants collected from different places.
RESULTA total of 3639 SSRs were found in the transcriptome of Erigeron breviscapus, distributed in 3260 unigenes with the distribution frequency of 6.99%. Di-nucleotide repeat was the main type, account for as much as 34.41% of all SSRs, followed by mono-nucleotide (31.41%) and tri-nucleotide repeat motif (28.08%). The di-nucleotide repeat motifs of AT/AT and AC/GT were the predominant repeat types (28.71%). The tri-nucleotide repeat motifs of AAT/AT was the predominant repeat types (7.94%). For validation the availability of those SSR primers, we randomly selected 36 pairs of primers for PCR amplification. Among them, 34 pair primers (94.44%) produced clear and reproductive bands, 19 pair primers showed polymorphism (52.78%), and 13 Erigeron breviscapus plants were divided into 2 groups.
CONCLUSIONThere are numerous SSRs in Erigeron breviscapus transcriptome with high frequency and various types, this will provide abundant candidate molecular markers for genetic diversity study and genetic map in this plant.
China ; DNA Primers ; genetics ; Erigeron ; classification ; genetics ; Genetic Variation ; Microsatellite Repeats ; Phylogeny ; Polymorphism, Genetic ; Transcriptome
3.RAPD analysis on genetic relationships of Erigeron breviscapus germplasm resources.
Sheng-Chao YANG ; Yong-Fang LI ; Zheng ZHAO ; Guo-Song WEN ; Yun LI ; You-Gui LIU ; Yong-Jian YANG ; Feng-Hui XIAO
China Journal of Chinese Materia Medica 2008;33(13):1532-1535
OBJECTIVETo investigate the genetic relationships of Erigeron breviscapus at the molecular biology level.
METHODThirty seven germplasm resources of E. breviscapus which collected from Yunnan, Sichuang and Guizhou province in 2005 were analyzed by Random amplified polymorphic DNA (RAPD) and cluster analysis based on NTSYS2.
RESULTA total of 10 primers were screened, and 107 bands were amplified, among which 94 (87.85%) bands were found to be polymorphic. Thirty seven germplasm resources of E. breviscapus were clustered into 3 groups at genetic distance 0.36, the I group include in 9 germplasm resources collected from Mile, Qiubei, Luxi, Gejiu, and Yanshan of south east of Yunnan province; the II group included 8 germplasm resources collected from Gucheng, and shangrila of north west of Yunnan province, and Mile and Qiubei of south east of Yunnan province; the III group included in 20 germplasm resources collected from the center of Yunnan province, north east of Yunnan province, Sichuan province, and Guizhou province.
CONCLUSIONThere were abundant genetic diversity in the germplasm resources of E. breviscapus, and the genetic relationships are closely related to geographical distance where they were collected.
Cluster Analysis ; Erigeron ; cytology ; genetics ; Genetic Variation ; Polymerase Chain Reaction ; Random Amplified Polymorphic DNA Technique
4.Identification and expression profiling of R2R3-MYB transcription factors in Erigeron breviscapus.
Wan-Ling SONG ; Gui-Sheng XIANG ; Ying-Chun LU ; Guang-Hui ZHANG ; Sheng-Chao YANG ; Yan ZHAO
China Journal of Chinese Materia Medica 2021;46(23):6149-6162
R2 R3-MYB transcription factors are ubiquitous in plants, playing a role in the regulation of plant growth, development, and secondary metabolism. In this paper, the R2 R3-MYB transcription factors were identified by bioinformatics analysis of the genomic data of Erigeron breviscapus, and their gene sequences, structures, physical and chemical properties were analyzed. The functions of R2 R3-MYB transcription factors were predicted by cluster analysis. Meanwhile, the expression patterns of R2 R3-MYB transcription factors in response to hormone treatments were analyzed. A total of 108 R2 R3-MYB transcription factors, named EbMYB1-EbMYB108, were identified from the genome of E. breviscapus. Most of the R2 R3-MYB genes carried 2-4 exons. The phylogenetic tree of MYBs in E. breviscapus and Arabidopsis thaliala was constructed, which classified 234 MYBs into 30 subfamilies. The MYBs in the five MYB subfamilies of A.thaliala were clustered into independent clades, and those in E. breviscapus were clustered into four clades. The transcriptome data showed that MYB genes were differentially expressed in different tissues of E. breviscapus and in response to the treatments with exogenous hormones such as ABA, SA, and GA for different time. The transcription of 13 R2 R3-MYB genes did not change significantly, and the expression patterns of some genes were up-regulated or down-regulated with the extension of hormone treatment time. This study provides a theoretical basis for revealing the mechanisms of R2 R3-MYB transcription factors in regulating the growth and development, stress(hormone) response, and active ingredient accumulation in E. breviscapus.
Erigeron/genetics*
;
Gene Expression Regulation, Plant
;
Genes, myb
;
Phylogeny
;
Plant Proteins/metabolism*
;
Transcription Factors/metabolism*
5.Genetic diversity and group consistency of breeding strains of Erigeron breviscapus determined by AFLP marker.
Wei ZHANG ; Jian-Jun WANG ; Xiang WEI ; Guang-Hui ZHANG ; Jian-Wen YANG ; Dao-Cong WU ; Sheng-Chao YANG
China Journal of Chinese Materia Medica 2013;38(14):2245-2249
OBJECTIVETo analyze the genetic diversity and breeding strains of the E. breviscapus germplasms, in order to provide theoretical information for Erigeron breviscapus breeding.
METHODThe genetic diversity and genetic structure were assayed to six germplasm resource of E. breviscapus which collected from Yunnna with 11 pairs primers and AFLP molecular marker.
RESULTSix hundred and four amplification bands among 636 DNA bands were from six accession of E. breviscapus, which are about 82.40% of total bands. The six germplasms could be divided into three group at the 0. 706 similarity coefficient level. The first category include QS-1, QS-2 and Dali, Shilin, Kunming population. The second category included wild population of Qiubei. The third category included several sample from different district. The mean genetic similarity coefficient of QS-1 and QS-2 was bigger, genetic similarity coefficient range was smaller, hereditary character was more stable. Molecular system clustering analysis showed that the geographical origin of the same part had relative polymerization phenomenon and its genetic relationship was close. Qiubei was a single group possibly relating to the specific genetic basis.
CONCLUSIONThe analysis of genetic diversity of E. breviscapus by AFLP marker is reliable. The systematic E. breviscapus breeding is feasible.
Amplified Fragment Length Polymorphism Analysis ; Breeding ; Erigeron ; genetics ; metabolism ; Genetic Markers ; Genetic Variation ; Plants, Medicinal ; genetics ; metabolism
6.Relationship between expression of chalcone synthase gene (CHS) and scutellarin content in Erigeron breviscapus.
Tao LIU ; Lan MU ; Yan-Li LIANG ; Jian-Jun WANG ; Sheng-Chao YANG
China Journal of Chinese Materia Medica 2013;38(14):2241-2244
OBJECTIVEScutellarin from Erigeron breviscapus is a flavonoid with remarkable pharmacological activity, whose route of biosynthesis is still fully clear. Chalcone synthase (CHS) is the key enzyme regulating flavonoids biosynthesis, and the aim of this study is to explain the relationship between patterns of the gene expression and scutellarin content through studying CHS gene expression patterns combined with scutellarin content in various parts of E. breviscapus.
METHODThrough RT-PCR and RACE, the full length of CHS was cloned and analyzed by fluorescent quantitative PCR. The scutellarin content in tissues was analyzed by HPLC.
RESULTThe full-length gene sequence was 1 270 bp, encoding 405 amino acids. Software analysis found that the DNA sequence was 80% similarity with Compositae plant homeo-box gene. Fluorescence quantitative analysis showed that CHS had the highest expression level in leaves, far higher than that in root, stem and flower. HPLC analysis showed that the scutellarin was the highest in leaves, followed by the flowers and stems, scutellarin was not detected in root.
CONCLUSIONCorrelation analysis showed that CHS expression amount and scutellarin content in different parts of E. breviscapus is positive correlation (r = 0.761, P < 0.05), it suggests that CHS gene expression level has important effect on biosynthesis of scutellarin.
Acyltransferases ; biosynthesis ; genetics ; metabolism ; Amino Acid Sequence ; Apigenin ; genetics ; metabolism ; Erigeron ; enzymology ; genetics ; metabolism ; Gene Expression ; Genes, Plant ; Glucuronates ; genetics ; metabolism ; Medicine, Chinese Traditional ; Molecular Sequence Data ; Plants, Medicinal ; enzymology ; genetics ; metabolism
7.Cloning and bioinformation analysis of flavone synthase II gene of Erigeron breviscapus.
Guang-Hui ZHANG ; Cui-Ting LI ; Jian-Jun WANG ; Wei ZHANG ; Jun-Wen CHEN ; Jian-Wen YANG ; Sheng-Chao YANG
China Journal of Chinese Materia Medica 2013;38(14):2231-2236
OBJECTIVEErigeron breviscapus is a medicinal plant with the most developmental potential in Yunnan province, which is belongs to Erigeron genus of Compositae family. Scutellarin, the main active component of Erigeron breviscapus is one of flavone 7-O-glucuronide derivatives, its biosynthesis pathway is still not clear.
METHODFull length cDNA encoding flavone syhthase II gene in E. breviscapus was cloned in this study using R-PCR, 3'-RACE and 5'-RACE.
RESULTThe opening reading frame of FS II cDNA of E. breviscapus is 1 557 bp long and encoding 518 amino acids, designed as EbFS II, which is highly homologous with FS II of Compositae species, like Callistephus chinensis, Cynara cardunculus var. scolymus, Gerbera hybrida, Dahlia pinnata and Lobelia erinus.
CONCLUSIONPhylogenetic analysis showed that EbFS II might has the function of directly converting flavanone to flavone.
Amino Acid Sequence ; Cloning, Molecular ; methods ; Computational Biology ; methods ; Cytochrome P-450 Enzyme System ; genetics ; metabolism ; Erigeron ; enzymology ; genetics ; Genes, Plant ; Molecular Sequence Data ; Plants, Medicinal ; enzymology ; genetics ; Sequence Alignment
8.Effect of Erigeron Breviscapus on the expression of OPG/RANKL/RANK in osteoblasts and pre-osteoclasts in vitro.
Chang-Geng LIU ; Qi-Xian LUO ; Tian-You LING ; Ye-Yue MO ; Zi-Li CHENG ; Sheng-Gao HUANG ; Hui MO
Chinese Journal of Integrated Traditional and Western Medicine 2013;33(12):1658-1664
OBJECTIVETo study the effect of Erigeron Breviscapus (EB) at different concentrations and different intervention time points on the mRNA and protein expression of OPG/RANKL/RANK in MG63 osteoblast-like cells and RAW264. 7 pre-osteoclast cells cultured in vitro, thus exploring roles EB played in bone rebuilding and its mechanisms.
METHODSMG63 osteoblast-like cells and RAW264.7 pre-osteoclast cells were cultured in vitro. The 3rd passage cells were divided into the control group and different experimental groups. Total RNA and protein were respectively isolated from cells treated with different concentrations of EB (0, 0.001, 0.01, 0.1, and 1.0 mg/mL) for 48 h. Meanwhile, the protein was extracted from 0 and 1 mg/mL EB groups at 12, 24, and 48 h respectively. Expression of OPG mRNA and RANKL mRNA in MG63 osteoblast-like cells, and expression of RANK mRNA in RAW264.7 pre-osteoclast cells were detected by semi-quantitative RT-PCR. Expression of OPG protein and RANKL protein in MG63 osteoblast-like cells, and expression of RANK protein in RAW264. 7 pre-osteoclast cells were detected by Western blot.
RESULTSAlong with increased EB concentration, expression of OPG mRNA and protein in MG63 osteoblast-like cells was gradually lowered (P < 0.05) after 48-h intervention of EB, the expression of RANKL mRNA and protein in MG63 osteoblast-like gradually increased (P < 0.05); the expression of RANK mRNA in RAW264.7 pre-osteoclast cells increased (P < 0.05). But the expression of RANK mRNA was slightly lower in the 0.1 mg/mL EB group than in the 0.01 mg/mL EB group, and the expression of RANK protein in RAW264.7 pre-osteoclast cells gradually increased (P < 0.05). After treatment with 1 mg/mL EB for 12, 24, 48 h, the expression of OPG protein in MG63 osteoblast-like cells gradually decreased as time went by (P < 0.05), and the expression of RANKL protein in MG63 osteoblast-like and RANK protein in RAW264.7 pre-osteoclast cells gradually increased (P < 0.05). The expression of RANKL protein in RAW264.7 pre-osteoclast cells increased as time went by (P < 0.05).
CONCLUSIONEB could inhibit the expression of OPG in osteoblasts in a dose- and time-dependent manner, promote the expression of RANKL in osteoblasts and the secretion of RANK in pre-osteoclast, indicating EB might play roles in promoting bone resorption.
Animals ; Cell Differentiation ; Cell Line ; Drugs, Chinese Herbal ; pharmacology ; Erigeron ; Humans ; Mice ; Osteoblasts ; drug effects ; metabolism ; Osteoclasts ; drug effects ; metabolism ; Osteoprotegerin ; metabolism ; RANK Ligand ; metabolism ; RNA, Messenger ; genetics ; Receptor Activator of Nuclear Factor-kappa B ; metabolism
9.Effects of Scutellarin on MUC5AC Mucin Production Induced by Human Neutrophil Elastase or Interleukin 13 on Airway Epithelial Cells.
De Peng JIANG ; Juliy M PERELMAN ; Victor P KOLOSOV ; Xiang Dong ZHOU
Journal of Korean Medical Science 2011;26(6):778-784
Scutellarin is a flavonoid extracted from a traditional Chinese herb, Erigeron breviscapus. The present study investigated the effect of scutellarin on MUC5AC mucin production and the possible mechanism. Human bronchial epithelial 16 (HBE16) cells were pretreated with scutellarin for 60 min, and then exposed to human neutrophil elastase (HNE) or interleukin (IL)-13 for 12 hr. RT-PCR and ELISA were performed to measure the amount of MUC5AC mucin production. The results showed that scutellarin inhibited MUC5AC expression both in mRNA and protein level induced by HNE in a concentration-dependent manner. However, scutellarin failed to inhibit MUC5AC mucin production induced by IL-13. To investigate the intracellular mechanisms associated with the effect of scutellarin on MUC5AC mucin production, western blotting was carried out to examine the phosphorylation of protein kinase C (PKC), signal transducer and activator of transcription 6 (STAT6) and extracellular signal-regulated kinase 1/2 (ERK1/2). The phosphorylation of PKC and ERK1/2 was attenuated after treatment with scutellarin, whereas STAT6 was not significantly affected. Therefore, it is suggested that scutellarin down-regulates MUC5AC mucin production on HBE16 cells via ERK-dependent and PKC-dependent pathways.
Apigenin/chemistry/*pharmacology
;
Cells, Cultured
;
Dose-Response Relationship, Drug
;
Down-Regulation
;
Epithelial Cells/*drug effects/metabolism
;
Erigeron/chemistry
;
Glucuronic Acids/chemistry/*pharmacology
;
Humans
;
Interleukin-13/*pharmacology
;
Leukocyte Elastase/*pharmacology
;
Mitogen-Activated Protein Kinase 1/metabolism
;
Mitogen-Activated Protein Kinase 3/metabolism
;
Mucin 5AC/genetics/*metabolism
;
Phosphorylation
;
Protein Kinase C/metabolism
;
Respiratory Mucosa/drug effects/*metabolism
;
STAT6 Transcription Factor/metabolism
;
Signal Transduction
10.Caffeic acid ester fraction from Erigeron breviscapus inhibits microglial activation and provides neuroprotection.
Shao-xia WANG ; Hong GUO ; Li-min HU ; Ya-nan LIU ; Yue-fei WANG ; Li-yuan KANG ; Xiu-mei GAO
Chinese journal of integrative medicine 2012;18(6):437-444
OBJECTIVETo investigate the effects of caffeic acid ester fraction (Caf) from Erigeron breviscapus, mainly composed of dicaffeoylquinic acids (diCQAs), on microglial activation in vitro and focal cerebral ischemia in vivo.
METHODSThe production of nitric oxide (NO), tumor necrosis factor α (TNF-α), and interleukin-1β (IL-1β) induced by lipopolysaccharide (LPS) treatment in rat primary cultured microglia were measured by Griess reaction or enzyme-linked immunosorbent assay. Cell viability of cortical neurons was measured using AlamarBlue reagent. The behavioral tests and the infarct area of brain were used to evaluate the damage to central nervous system in rat middle cerebral artery occlusion (MCAO) model of cerebral ischemia. Real time polymerase chain reaction was used to determine the expression of inducible nitric oxide synthase (iNOS), TNF-α and IL-1β mRNA in ischemic cerebral tissues.
RESULTSCaf inhibited the production of NO, TNF-α and IL-1β induced by LPS treatment in primary microglia in a dose-dependent manner. Exposure of cortical neurons to conditioned medium from Caf-treated microglia increased neuronal cell viability (P<0.01) compared with conditioned medium from LPS-treated alone. In MCAO rat model of cerebral ischemia, Caf could significantly improve neurobehavioural performance and reduce percentage infarct volume compared with the vehicle group (P<0.05). Caf could also significantly inhibit the up-regulation of iNOS, TNF-α, and IL-1β gene expressions in ischemic cerebral tissues.
CONCLUSIONCaf could suppress microglial activation, which may be one mechanism of its neuroprotective effect against ischemia.
Animals ; Brain ; drug effects ; metabolism ; pathology ; Brain Ischemia ; complications ; drug therapy ; pathology ; prevention & control ; Caffeic Acids ; chemistry ; pharmacology ; Chemical Fractionation ; Chromatography, High Pressure Liquid ; Erigeron ; chemistry ; Gene Expression Regulation ; drug effects ; Infarction, Middle Cerebral Artery ; complications ; pathology ; Interleukin-1beta ; genetics ; metabolism ; Microglia ; drug effects ; metabolism ; pathology ; Neuroprotective Agents ; chemistry ; pharmacology ; therapeutic use ; Nitric Oxide Synthase Type II ; genetics ; metabolism ; Plant Extracts ; pharmacology ; Quinic Acid ; analogs & derivatives ; chemistry ; pharmacology ; therapeutic use ; RNA, Messenger ; genetics ; metabolism ; Rats ; Rats, Wistar ; Tumor Necrosis Factor-alpha ; genetics ; metabolism