1.Metagenomic analysis of the diversity of microbes in the Napahai plateau wetland and their carbon and nitrogen metabolisms.
Zhiwei XU ; Xuemei CHEN ; Yunlin WEI ; Qi ZHANG ; Xiuling JI
Chinese Journal of Biotechnology 2021;37(9):3276-3292
Due to the special geographical location and the complex ecosystem types, plateau wetlands play important ecological roles in water supply, greenhouse gas regulation and biodiversity preservation. Napahai plateau wetland is a special wetland type with low latitude and high altitude, and its microbial diversity was rarely studied. The diversity of microbial communities in the Napahai plateau wetland was analyzed using metagenomics method. Among the microbes detected, 184 phyla, 3 262 genera and 24 260 species belong to the bacterial domain, 13 phyla and 32 genera belong to the archaeal domain, and 13 phyla and 47 genera belong to the fungal domain. Significant differences in species diversity between soil and water were observed. Acidobacteria, Proteobacteria and Actinobacteria were dominant phyla in soil, while Proteobacteria and Bacteroides were dominant phyla in water. Since the carbon and nitrogen metabolism genes were abundant, the pathways of carbon fixation and nitrogen metabolism were analyzed. Calvin cycle, reductive tricarboxylic acid cycle and 3-hydroxypropionic acid cycle were the main carbon fixation pathways, while Proteobacteria, Chloroflexi, and Crenarchaeota were the main carbon-fixing bacteria group. As for the nitrogen cycle, nitrogen fixation and dissimilatory nitrate reduction were dominant in water, while nitrification and denitrification were dominant in soil. Proteobacteria, Nitrospirae, Verrucomicrobia, Actinobacteria, Thaumarchaeota and Euryarchaeota contributed to the nitrogen cycle. The study on microbial diversity of Napahai plateau wetlands provides new knowledge for the comprehensive management and protection of wetland environment in China.
Carbon
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Ecosystem
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Metagenomics
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Nitrogen
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Soil Microbiology
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Wetlands
2.Phytoecological evaluation with detail floristic appraisal of the vegetation arround Malam Jabba, Swat, Pakistan.
Abdur RASHID ; Mohammad Farooq SWATI ; Hassan SHER ; Mohammad N AL-YEMENI
Asian Pacific Journal of Tropical Biomedicine 2011;1(6):461-467
OBJECTIVETo determine the present status of plant communities and their possible association with the habitat in Malam Jabba, Swat, Pakistan.
METHODSA study on the phytoecology was conducted in various ecologically important sites of Malam Jabba, Swat, Pakistan from 2002 to 2004. The altitude of these sites ranged from 1 200 m to 3 200 m. Quadrat method was used for evaluation of plants communities and the data on these attributes was converted to relative values. The plant communities were named after 3 leading species with highest importance values. Biological spectrum of the flora based on the life form was prepared by following Raunkiar's life form classes.
RESULTSThe floristic composition and structure of the study area were found to be 200 species belonging to 75 families. Asteraceae, Lamiaceae and Poaceae were important families in the study area. The biological spectrum showed that therophytic and hemicrytophytic life form and micro-nonophyllous leaf sizes were dominant in the area. The air and soil temperatures were decreasing with increasing elevation. Both the air and soil temperatures were relatively higher in south slopes than on the northeast slopes. The vegetation analysis of the area indicated eleven plant communities around the area. The present vegetation is the relics of moist temperate coniferous forest in the area. The communities reflect highly deteriorated conditions. Both the structure and composition of the surrounding vegetation were associated with the types of habitats.
CONCLUSIONSThe conservation of the remaining populations of the reported communities will be best achieved by proper time of sustainable harvesting. It is only possible with the participation of local communities.
Biodiversity ; Ecosystem ; Pakistan ; Plants ; classification
3.Study on modules biomass structure of Epimedium acuminatum in different habitats.
Weike JIANG ; Tao ZHOU ; Aijuan SHAO ; Meilan CHEN ; Renyin LI ; Yanlei JIN
China Journal of Chinese Materia Medica 2011;36(4):420-424
OBJECTIVETo study the biomass structure of Epimedium acuminatum Franch in the different ecological environments for the development and protection.
METHODThrough the scientific investigation in four typical habitats, the sampling spots were set up, the functional modules' biomass structure and relationship of E. acuminatum were researched.
RESULTThe average of rhizome, as the largest biomass, and the average total biomass had the same pattern: the open areas of forest edge > shrub lumber > shrub-weed > stream drains. The ratio of the functional modules' biomass had different rates under different habitat conditions. By analyzing and combining investigation, the aerial part of E. acuminatum in the shrub-weed were comparative advantage, and the roots of nutrient accumulation of E. acuminatum in the open areas of forest edge were the highest efficient. Under different ecological condition, the distribution of water metabolism was different strategies.
CONCLUSIONIn the open areas of forest edge, E. acuminatum growing well, followed by shrub-weed. These two habitats are the ideal ecological environments while the rhizome or the whole plant used as medicine, but also the protection of E. acuminatum.
Biomass ; Ecosystem ; Epimedium ; growth & development
4.Bartonella rochalimae, B. grahamii, B. elizabethae, and Wolbachia spp. in Fleas from Wild Rodents near the China-Kazakhstan Border
Xiaoping YIN ; Shanshan ZHAO ; Bin YAN ; Yanhe TIAN ; Teer BA ; Jiangguo ZHANG ; Yuanzhi WANG
The Korean Journal of Parasitology 2019;57(5):553-559
The Alataw Pass, near the Ebinur Lake Wetland (northwest of China) and Taldykorgan (east of Kazakhstan), is a natural habitat for wild rodents. To date, little has been done on the surveillance of Bartonella spp. and Wolbachia spp. from fleas in the region. Here we molecularly detected Bartonella spp. and Wolbachia spp. in wild rodent fleas during January and October of 2016 along the Alataw Pass-Kazakhstan border. A total of 1,706 fleas belonging to 10 species were collected from 6 rodent species. Among the 10 flea species, 4 were found to be positive for Wolbachia, and 5 flea species were positive for Bartonella. Molecular analysis indicated that i) B. rochalimae was firstly identified in Xenopsylla gerbilli minax and X. conforms conforms, ii) B. grahamii was firstly identified in X. gerbilli minax, and iii) B. elizabethae was firstly detected in Coptopsylla lamellifer ardua, Paradoxopsyllus repandus, and Nosopsyllus laeviceps laeviceps. Additionally, 3 Wolbachia endosymbionts were firstly found in X. gerbilli minax, X. conforms conforms, P. repandus, and N. laeviceps laeviceps. BLASTn analysis indicated 3 Bartonella species showed genotypic variation. Phylogenetic analysis revealed 3 Wolbachia endosymbionts were clustered into the non-Siphonaptera Wolbachia group. These findings extend our knowledge of the geographical distribution and carriers of B. rochalimae, B. grahamii, B. elizabethae, and Wolbachia spp. In the future, there is a need for China-Kazakhstan cooperation to strengthen the surveillance of flea-borne pathogens in wildlife.
Bartonella
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Ecosystem
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Lakes
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Rodentia
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Siphonaptera
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Wetlands
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Wolbachia
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Xenopsylla
5.Species diversity and host of Thesium chinense community.
China Journal of Chinese Materia Medica 2011;36(3):268-271
OBJECTIVETo study species diversity and the host of Thesium chinense community.
METHODThe investigation on phytocoenology was carried out on the T. chinense community in 7 areas of Anhui Province and Jiangsu Province. The correlation between species diversity of community and T. chinense abundance was analyzed regarding to the abundance of species, the abundant index of species, species diversity index and community even index.
RESULT AND CONCLUSIONThe results showed that T. chinense liked light, warm climate, liked acidic to neuter soil. The majority of T. chinense distributed in the humid wasteland and herbaceous community. There was a positive correlation between the abundance of T. chinense and the unity numbers of community, and a negative correlation between the abundance of T. chinense and the abundance, coverage, diversity index, Pielou even index of community. T. chinense host species was various. This investigation found 28 host species belong to 11 Families, among them 5 Families and 18 species were found for the first time.
Biodiversity ; Ecosystem ; Santalaceae ; classification ; physiology ; Soil ; analysis
6.Contribution to the Checklist of Soil-inhabiting Fungi in Korea.
Seonju LEE ; Seung Beom HONG ; Chang Yung KIM
Mycobiology 2003;31(1):9-18
A total of 82 genera and 271 species of soil-inhabiting fungi including saprobic, nematode-trapping, and arbuscular mycorrhizal but plant pathogenic fungi published hitherto in South Korea are listed with the information on geographic location, habitat, vegetation when available, and relevant literatures.
Biodiversity
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Checklist*
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Ecosystem
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Fungi*
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Korea*
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Mycorrhizae
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Plants
7.Bacterial diversity on wild shrimp post larvae in a mangrove biodiversity hotspot
Siti Zuliana Ahmad ; Mardani Abdul Halim ; Siti Azizah Mohd Nor ; Kamarul Zaman Zarkasi
Malaysian Journal of Microbiology 2021;17(6):681-689
Aims:
This study aims to assess the impact of anthropogenic activities on shrimp microbiome in a biodiverse mangrove forest ecosystem, along the Merbok River, Kedah, Malaysia.
Methodology and results:
To assess the impacts, a microbiome study of wild post larvae shrimps along the river was conducted as a health indicator of the shrimp hosts which in turn would reflect the river conditions. A 16S rRNA gene amplicon sequencing of the wild post larvae shrimp microbiomes sampled across areas of varying human activities was conducted. Samples were obtained from four sites ranging from upstream river habitat to downstream brackish water towards the marine coast. Individuals detected from the sequence were then counted and their relative abundance of bacterial diversity were compared. All abundances are up to 100% and the diversity indices were calculated using proportions of each species. The Operational Taxonomy Unit (OTUs) were obtained by using USEARCH and UPARSE software. Twenty-eight bacterium phyla were detected, dominated by phyla Proteobacteria, Actinobacteria, Firmicutes and Bacteroidetes at each site. Eighteen families were dominant at each site with Streptomycetaceae being the major abundant. At the genus level, the most abundant genera were Streptomyces sp., Mesorhizobium sp., Rhizobium sp., Bacillus sp. and Pseudomonas sp.
Conclusion, significance and impact of study
In general, the diversity of opportunistic and coliform bacteria was low. Thus, despite being exposed to various levels of human activities, the Merbok River and its mangrove surroundings still serve as a good spawning and nursery sites of shrimps and presumably other inhabitants.
Biodiversity
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Decapoda
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Wetlands
8.Comparison of planting modes of Dendrobium huoshanense and analysis of advantages of simulated cultivation.
Shan-Yong YI ; Chuan-Zhi KANG ; Wei WANG ; Xiang-Wen SONG ; Tao XU ; Hai-Bo LU ; Shu-Lan LUO ; Dong LIU ; Lan-Ping GUO ; Bang-Xing HAN
China Journal of Chinese Materia Medica 2021;46(8):1864-1868
Dendrobium huoshanense is a precious medicinal plant belonging to Dendrobium of Orchidaceae. It is a special medicinal material and extremely scarce in Huoshan county, Anhui province. At present, D. huoshanense has been greatly protected, which also makes it possible to industrialize relying on tissue culture and artificial cultivation technology. Three main planting methods were utilized for cultivating D. huoshanense including facility cultivation, under forest cultivation and simulative habitat cultivation. Firstly, the three cultivation modes and technical characteristics of D. huoshanense were compared and analyzed, and it was found that the ecological environment of D. huoshanense cultivated in the simulated environment was closer to that of wild D. huoshanense. Secondly, based on comparing the characters and quality of three cultivation modes, the results showed that the shape of D. huoshanense cultivated in simulated environment was more similar to that of "grasshopper thigh" recorded in Bencao Jing Jizhu, and its quality was better than that of facilities and under forest cultivation. The comprehensive benefit comparison of three modes showed that the simulated cultivation had high income, the lowest input-output ratio and significant economic benefit. The quality of cultivated D. huoshanense was further evaluated from four aspects of "excellent environment" "excellent shape" "high quality" "excellent effect", which summarized the comprehensive advantages of simulative habitat cultivation of D. huoshanense as follows: the original habitat and site environment of simulated wild D. huoshanense, the closer shape to the wild, the more content of main medicinal components, and higher economic benefit and better efficacy. The quality of D. huoshanense was improved by the use of simulative habitat cultivation, which has practical significance to guide its large-scale cultivation.
Dendrobium
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Ecosystem
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Forests
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Plants, Medicinal
9.Research on reserves estimation method of wild medicinal plants resource for generous species based on spatial information technology.
Wei-Feng MA ; Xiao-Bo ZHANG ; Lan-Ping GUO ; Ben-Gang ZHANG ; Run-Huai ZHAO ; Lu-Qi HUANG ; Shou-Dong ZHU ; Yu QIAO
China Journal of Chinese Materia Medica 2013;38(8):1130-1133
Traditional Chinese medicinal resource survey method is time-consuming, strenuous, and having great human influence, the precision is not high enough. This paper, by using spatial information technology, carries on spatial sampling survey for wild medicinal plants resource for generous species to arrange the quadrat scientifically and estimate the suitable area, reserve precisely of medicinal plants. It not only improves the survey precision, but reduces the workload of field survey and provides scientific basis for survey method of pilot work on the fourth national traditional Chinese medicinal resource census.
Biodiversity
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Conservation of Natural Resources
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Ecosystem
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Humans
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Plants, Medicinal
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Spatial Analysis
10.Research progress on intestinal microecology regulating mechanism and biological activities of polysaccharides.
Ting TANG ; Hua-Guo CHEN ; Chao ZHAO ; Xiao-Jian GONG ; Qing-Fang DENG ; Xin ZHOU
China Journal of Chinese Materia Medica 2021;46(21):5585-5592
Intestinal microecology is an important defense system in the human body. The intestinal flora is the core micro-ecosystem in the human intestine. It has a symbiotic relationship with the overall functions of the body. It has strong metabolic activity to maintain the normal functioning of the body and resist the invasion of various viral antigens in the body. Playing a protective function,the imbalanced intestinal microecology can cause various diseases. Polysaccharides can be extracted from a wide range of sources and have low toxicity and side effects. They have attracted wide attention because of their anti-tumor, anti-oxidant, anti-inflammatory and other biological activities. Studies have demonstrated that polysaccharides can regulate intestinal microecological disorders. According to the studies in recent years, this review summarizes that polysaccharides mainly modulate intestinal microecological disorders through regulating the composition of intestinal flora, improving the metabolism of the flora, and repairing the intestinal tract barrier. On the basis of these mechanisms of action, this paper elaborates the anti-tumor, immunomodulatory, and anti-inflammatory activities of polysaccharides. This paper can provide reference for the future research on the intestinal microecology-regulating mechanism and biological activities of polysaccharides.
Anti-Inflammatory Agents
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Ecosystem
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Gastrointestinal Microbiome
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Humans
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Intestines
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Polysaccharides/pharmacology*