1.The two-stage interaction of Ebola virus VP40 with nucleoprotein results in a switch from viral RNA synthesis to virion assembly/budding.
Linjuan WU ; Dongning JIN ; Dan WANG ; Xuping JING ; Peng GONG ; Yali QIN ; Mingzhou CHEN
Protein & Cell 2022;13(2):120-140
Ebola virus (EBOV) is an enveloped negative-sense RNA virus and a member of the filovirus family. Nucleoprotein (NP) expression alone leads to the formation of inclusion bodies (IBs), which are critical for viral RNA synthesis. The matrix protein, VP40, not only plays a critical role in virus assembly/budding, but also can regulate transcription and replication of the viral genome. However, the molecular mechanism by which VP40 regulates viral RNA synthesis and virion assembly/budding is unknown. Here, we show that within IBs the N-terminus of NP recruits VP40 and is required for VLP-containing NP release. Furthermore, we find four point mutations (L692A, P697A, P698A and W699A) within the C-terminal hydrophobic core of NP result in a stronger VP40-NP interaction within IBs, sequestering VP40 within IBs, reducing VP40-VLP egress, abolishing the incorporation of NC-like structures into VP40-VLP, and inhibiting viral RNA synthesis, suggesting that the interaction of N-terminus of NP with VP40 induces a conformational change in the C-terminus of NP. Consequently, the C-terminal hydrophobic core of NP is exposed and binds VP40, thereby inhibiting RNA synthesis and initiating virion assembly/budding.
Ebolavirus/physiology*
;
HEK293 Cells
;
HeLa Cells
;
Humans
;
Nucleocapsid Proteins/metabolism*
;
RNA, Viral/metabolism*
;
Viral Matrix Proteins/metabolism*
;
Virion/metabolism*
;
Virus Assembly
2.Insights of window-bsed mechanism approach to visualize composite bioData point in feature spaces
Genomics & Informatics 2019;17(1):e4-
In this paper, we propose a window-based mechanism visualization approach as an alternative way to measure the seriousness of the difference among data-insights extracted from a composite biodata point. The approach is based on two components: undirected graph and Mosaab-metric space. The significant application of this approach is to visualize the segmented genome of a virus. We use Influenza and Ebola viruses as examples to demonstrate the robustness of this approach and to conduct comparisons. This approach can provide researchers with deep insights about information structures extracted from a segmented genome as a composite biodata point, and consequently, to capture the segmented genetic variations and diversity (variants) in composite data points.
Ebolavirus
;
Genetic Variation
;
Genome
;
Influenza, Human
3.Data Fitting and Scenario Analysis of Vaccination in the 2014 Ebola Outbreak in Liberia
Osong Public Health and Research Perspectives 2019;10(3):187-201
OBJECTIVES: This study aimed to extend an epidemiological model (SEIHFR) to analyze epidemic trends, and evaluate intervention efficacy. METHODS: SEIHFR was modified to examine disease transmission dynamics after vaccination for the Ebola outbreak. Using existing data from Liberia, sensitivity analysis of various epidemic scenarios was used to inform the model structure, estimate the basic reproduction number ℜ₀ and investigate how the vaccination could effectively change the course of the epidemic. RESULTS: If a randomized mass vaccination strategy was adopted, vaccines would be administered prophylactically or as early as possible (depending on the availability of vaccines). An effective vaccination rate threshold for Liberia was estimated as 48.74% among susceptible individuals. If a ring vaccination strategy was adopted to control the spread of the Ebola virus, vaccines would be given to reduce the transmission rate improving the tracing rate of the contact persons of an infected individual. CONCLUSION: The extended SEIHFR model predicted the total number of infected cases, number of deaths, number of recoveries, and duration of outbreaks among others with different levels of interventions such as vaccination rate. This model may be used to better understand the spread of Ebola and develop strategies that may achieve a disease-free state.
Africa, Western
;
Basic Reproduction Number
;
Disease Outbreaks
;
Ebolavirus
;
Humans
;
Liberia
;
Mass Vaccination
;
Vaccination
;
Vaccines
4.Knowledge, attitudes, and behavioural risk factors regarding zoonotic infections among bushmeat hunters and traders in Nsukka, southeast Nigeria.
Kingsley Uchenna OZIOKO ; Chris IKEM OKOYE ; Rose NDUKA OBIEZUE ; Raymond AWUDU AGBU
Epidemiology and Health 2018;40(1):e2018025-
OBJECTIVES: In light of the dramatic spread of Ebola virus in some parts of Africa and the 2014 outbreak in Nigeria, a study was conducted to evaluate bushmeat dealers' knowledge and attitudes about zoonotic infections and the risk of transmission to humans. METHODS: A cross-sectional survey was conducted in a community in Nsukka, southeast Nigeria. Hunters (n=34) and bushmeat traders (n=42) were interviewed. A semi-structured questionnaire was used to generate the data. The Fisher exact test was used to evaluate the significance of differences between these groups. RESULTS: Only 11.8% of the hunters, as compared to 35.7% of the traders, had no knowledge of possible causes of zoonotic infections (p < 0.05). However, 64.7% of the hunters, compared to 38.1% of the traders, were ignorant regarding the responsibility of public health personnel and veterinarians (p < 0.05), and 76.5% of the hunters compared to 42.9% of the traders were ignorant regarding the existence of zoonoses in Nigeria (p < 0.05). A statistically significant difference was also found between these groups regarding the risk of contracting an infection from ectoparasites (p < 0.05). The attitudes of respondents towards zoonotic diseases did not differ significantly between the groups. CONCLUSION: The level of awareness about zoonotic diseases was low in this area, underscoring the need for interventions.
Africa
;
Cross-Sectional Studies
;
Ebolavirus
;
Humans
;
Nigeria*
;
Public Health
;
Risk Factors*
;
Surveys and Questionnaires
;
Veterinarians
;
Zoonoses*
5.Ebola virus mucin-like glycoprotein (Emuc) induces remarkable acute inflammation and tissue injury: evidence for Emuc pathogenicity in vivo.
Yun-Jia NING ; Zhenyu KANG ; Jingjun XING ; Yuan-Qin MIN ; Dan LIU ; Kuan FENG ; Manli WANG ; Fei DENG ; Yiwu ZHOU ; Zhihong HU ; Hualin WANG
Protein & Cell 2018;9(4):389-393
Adenoviridae
;
genetics
;
Ebolavirus
;
genetics
;
pathogenicity
;
Gene Transfer Techniques
;
Genetic Vectors
;
therapeutic use
;
Glycoproteins
;
genetics
;
HEK293 Cells
;
Hemorrhagic Fever, Ebola
;
genetics
;
pathology
;
virology
;
Humans
;
Inflammation
;
genetics
;
pathology
;
virology
;
Mucins
;
genetics
;
Transfection
;
Viral Envelope Proteins
;
genetics
6.Knowledge, attitudes, and behavioural risk factors regarding zoonotic infections among bushmeat hunters and traders in Nsukka, southeast Nigeria
Kingsley Uchenna OZIOKO ; Chris IKEM OKOYE ; Rose NDUKA OBIEZUE ; Raymond AWUDU AGBU
Epidemiology and Health 2018;40(1):2018025-
OBJECTIVES: In light of the dramatic spread of Ebola virus in some parts of Africa and the 2014 outbreak in Nigeria, a study was conducted to evaluate bushmeat dealers' knowledge and attitudes about zoonotic infections and the risk of transmission to humans.METHODS: A cross-sectional survey was conducted in a community in Nsukka, southeast Nigeria. Hunters (n=34) and bushmeat traders (n=42) were interviewed. A semi-structured questionnaire was used to generate the data. The Fisher exact test was used to evaluate the significance of differences between these groups.RESULTS: Only 11.8% of the hunters, as compared to 35.7% of the traders, had no knowledge of possible causes of zoonotic infections (p < 0.05). However, 64.7% of the hunters, compared to 38.1% of the traders, were ignorant regarding the responsibility of public health personnel and veterinarians (p < 0.05), and 76.5% of the hunters compared to 42.9% of the traders were ignorant regarding the existence of zoonoses in Nigeria (p < 0.05). A statistically significant difference was also found between these groups regarding the risk of contracting an infection from ectoparasites (p < 0.05). The attitudes of respondents towards zoonotic diseases did not differ significantly between the groups.CONCLUSION: The level of awareness about zoonotic diseases was low in this area, underscoring the need for interventions.
Africa
;
Cross-Sectional Studies
;
Ebolavirus
;
Humans
;
Nigeria
;
Public Health
;
Risk Factors
;
Surveys and Questionnaires
;
Veterinarians
;
Zoonoses
7.Purification and characterization of monoclonal IgG antibodies recognizing Ebola virus glycoprotein.
Baek Sang HAN ; Ho Young JANG ; Trina RACINE ; Xiangguo QIU ; Jeong Im SIN
Clinical and Experimental Vaccine Research 2018;7(2):119-128
PURPOSE: The goal of this study was to purify and characterize Ebola virus glycoprotein (GP)-specific IgG antibodies from hybridoma clones. MATERIALS AND METHODS: For hybridoma production, mice were injected by intramuscular-electroporation with GP DNA vaccines, and boosted with GP vaccines. The spleen cells were used for producing GP-specific hybridoma. Enzyme-linked immunosorbent assay, Western blot assay, flow cytometry, and virus-neutralizing assay were used to test the ability of monoclonal IgG antibodies to recognize GP and neutralize Ebola virus. RESULTS: Twelve hybridomas, the cell supernatants of which displayed GP-binding activity by enzyme-linked immunosorbent assay and the presence of both IgG heavy and light chains by Western blot assay, were chosen as a possible IgG producer. Among these, five clones (C36-1, D11-3, D12-1, D34-2, and E140-2) were identified to secrete monoclonal IgG antibodies. When the monoclonal IgG antibodies from the 5 clones were tested for their antigen specificity, they recognized GP in an antigen-specific and IgG dose-dependent manner. They remained reactive to GP at the lowest tested concentrations (1.953–7.8 ng/mL). In particular, IgG antibodies from clones D11-3, D12-1, and E140-2 recognized the native forms of GP expressed on the cell surface. These antibodies were identified as IgG1, IgG2a, or IgG2b kappa types and appeared to recognize the native forms of GP, but not the denatured forms of GP, as determined by Western blot assay. Despite their GP-binding activity, none of the IgG antibodies neutralized Ebola virus infection in vitro, suggesting that these antibodies are unable to neutralize Ebola virus infection. CONCLUSION: This study shows that the purified IgG antibodies from 5 clones (C36-1, D11-3, D12-1, D34-2, and E140-2) possess GP-binding activity but not Ebola virus-neutralizing activity.
Animals
;
Antibodies*
;
Antibody Formation
;
Blotting, Western
;
Clone Cells
;
Ebolavirus*
;
Enzyme-Linked Immunosorbent Assay
;
Flow Cytometry
;
Glycoproteins*
;
Hemorrhagic Fever, Ebola
;
Hybridomas
;
Immunoglobulin G*
;
In Vitro Techniques
;
Mice
;
Sensitivity and Specificity
;
Spleen
;
Vaccines
;
Vaccines, DNA
8.A novel carbon nanoparticle probe-based ultrasensitive lateral flow assay for rapid detection of Ebola virus.
Yanqiu WEI ; Yongcheng DUAN ; Yuhai BI ; Meng WANG ; Yunlong LI ; Xuan WANG ; Wei LI ; Wenhui FAN ; Jing WANG ; Wenjun LIU ; Limin YANG
Chinese Journal of Biotechnology 2018;34(12):2025-2034
Ebola virus (EBOV) is an extremely contagious pathogen first discovered in Africa associated with severe hemorrhagic disease in humans and nonhuman primates, which has resulted in at least 28 500 suspected cases and 11 300 confirmed deaths in 2014-2016 Ebola epidemic in West Africa. Rapid and sensitive detection of EBOV is the key to increasing the probability of survival and reducing infection rates in pandemic regions. Here, we report an ultrasensitive and instrument-free EBOV detection assay based on colloidal carbon immunochromatography. Carbon nanoparticle-labeled rabbit anti-EBOV-VP40 IgG were concentrated in the conjugate pad, monoclonal antibody (McAb, 4B7F9) against EBOV-VP40 and goat anti-rabbit IgG were immobilized on the nitrocellulose membrane with 2 μL/cm at a concentration of 1 mg/mL as test and control lines, respectively. Then the sample application pad, conjugate release pad, nitrocellulose membrane and absorbent pad were assembled into a lateral flow test strip. The test strip shows strong specificity against related viruses that share similar clinical symptoms and geographic range with EBOV, including marburg virus, influenza virus, yellow fever virus and dengue virus. In addition, 1 500 negative serums were tested with false-positive rate of 1.3‰ which significantly lower than that of ReEBOV™ colloidal gold test kit recommended by World Health Organization (WHO). The sensitivity of this strip was analyzed using inactivated EBOV with detection limit of 100 ng/mL (10⁶ copies/mL) which clearly higher than that of ReEBOV™ dipstick (10⁸ copies/mL). Furthermore, the strip showed excellent thermal stability characteristics in room temperature and could be as a point-of-care (POC), ultra-sensitive and specific promising candidate for EBOV serological screening in rural Africa or entry/exit ports.
Animals
;
Carbon
;
Ebolavirus
;
Hemorrhagic Fever, Ebola
;
Humans
;
Nanoparticles
;
Rabbits
9.Preferential production of IgM-secreting hybridomas by immunization with DNA vaccines coding for Ebola virus glycoprotein: use of protein boosting for IgG-secreting hybridoma production.
Si Hyeong LEE ; Baek Sang HAN ; Jongseon CHOE ; Jeong Im SIN
Clinical and Experimental Vaccine Research 2017;6(2):135-145
PURPOSE: The goal of this study was to investigate the utility of DNA vaccines encoding Ebola virus glycoprotein (GP) as a vaccine type for the production of GP-specific hybridomas and antibodies. MATERIALS AND METHODS: DNA vaccines were constructed to express Ebola virus GP. Mice were injected with GP DNA vaccines and their splenocytes were used for hybridoma production. Enzyme-linked immunosorbent assays (ELISAs), limiting dilution subcloning, antibody purification methods, and Western blot assays were used to select GP-specific hybridomas and purify monoclonal antibodies (MAbs) from the hybridoma cells. RESULTS: Twelve hybridomas, the cell supernatants of which displayed GP-binding activity, were selected by ELISA. When purified MAbs from 12 hybridomas were tested for their reactivity to GP, 11 MAbs, except for 1 MAb (from the A6-9 hybridoma) displaying an IgG2a type, were identified as IgM isotypes. Those 11 MAbs failed to recognize GP. However, the MAb from A6-9 recognized the mucin-like region of GP and remained reactive to the antigen at the lowest tested concentration (1.95 ng/mL). This result suggests that IgM-secreting hybridomas are predominantly generated by DNA vaccination. However, boosting with GP resulted in greater production of IgG-secreting hybridomas than GP DNA vaccination alone. CONCLUSION: DNA vaccination may preferentially generate IgM-secreting hybridomas, but boosting with the protein antigen can reverse this propensity. Thus, this protein boosting approach may have implications for the production of IgG-specific hybridomas in the context of the DNA vaccination platform. In addition, the purified monoclonal IgG antibodies may be useful as therapeutic antibodies for controlling Ebola virus infection.
Animals
;
Antibodies
;
Antibodies, Monoclonal
;
Antibody Formation
;
Blotting, Western
;
Clinical Coding*
;
DNA*
;
Ebolavirus*
;
Enzyme-Linked Immunosorbent Assay
;
Glycoproteins*
;
Hemorrhagic Fever, Ebola
;
Hybridomas*
;
Immunization*
;
Immunoglobulin G
;
Immunoglobulin M
;
Mice
;
Vaccination
;
Vaccines, DNA*
10.Establishment of Quality Control System of Nucleic Acid Detection for Ebola Virus in Sierra Leone-China Friendship Biological Safety Laboratory.
Qin WANG ; Yong ZHANG ; Kai NIE ; Huanyu WANG ; Haijun DU ; Jingdong SONG ; Kang XIAO ; Wenwen LEI ; Jianqiang GUO ; Hejiang WEI ; Kun CAI ; Yanhai WANG ; Jiang WU ; Bangura GERALD ; Idrissa Laybohr KAMARA ; Mifang LIANG ; Guizhen WU ; Xiaoping DONG
Chinese Journal of Virology 2016;32(2):210-214
The quality control process throughout the Ebola virus nucleic acid detection in Sierra Leone-China Friendship Biological Safety Laboratory (SLE-CHN Biosafety Lab) was described in detail, in order to comprehensively display the scientific, rigorous, accurate and efficient practice in detection of Ebola virus of first batch detection team in SLE-CHN Biosafety Lab. Firstly, the key points of laboratory quality control system was described, including the managements and organizing, quality control documents and information management, instrument, reagents and supplies, assessment, facilities design and space allocation, laboratory maintenance and biosecurity. Secondly, the application of quality control methods in the whole process of the Ebola virus detection, including before the test, during the test and after the test, was analyzed. The excellent and professional laboratory staffs, the implementation of humanized management are the cornerstone of the success; High-level biological safety protection is the premise for effective quality control and completion of Ebola virus detection tasks. And professional logistics is prerequisite for launching the laboratory diagnosis of Ebola virus. The establishment and running of SLE-CHN Biosafety Lab has landmark significance for the friendship between Sierra Leone and China, and the lab becomes the most important base for Ebola virus laboratory testing in Sierra Leone.
China
;
Ebolavirus
;
classification
;
genetics
;
isolation & purification
;
Hemorrhagic Fever, Ebola
;
diagnosis
;
virology
;
Humans
;
Laboratories
;
manpower
;
standards
;
Laboratory Infection
;
Quality Control
;
RNA, Viral
;
genetics
;
Sierra Leone

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