1.Clinical application of chromosomal microarray for pathogenic genomic imbalance in fetuses with increased nuchal translucency but normal karyotype
Dongsook LEE ; Sanghee GO ; Sohyun NA ; Surim PARK ; Jinyoung MA ; Doyeong HWANG
Journal of Genetic Medicine 2020;17(1):21-26
Purpose:
To evaluate the additive value of prenatal chromosomal microarray analysis (CMA) in assessing increased nuchal translucency (NT) (≥3.5 mm) with normal karyotype and the possibility of detecting clinically significant genomic imbalance, based on specific indications.
Materials and Methods:
Invasive samples from 494 pregnancies with NT ≥3.5 mm, obtained from the Research Center of Fertility & Genetics of Hamchoon Women’s Clinic between January 2019 and February 2020, were included in this study and CMA was performed in addition to a standard karyotype.
Results:
In total, 494 cases were subjected to both karyotype and CMA analyses. Among these, 199 cases of aneuploidy were excluded. CMA was performed on the remaining 295 cases (59.7%), which showed normal (231/295, 78.3%) or non-significant copy number variation (CNV), such as benign CNV or variants of uncertain clinical significance likely benign (53/295, 18.0%). Clinically significant CNVs were detected in 11 cases (11/295, 3.7%).
Conclusion
Prenatal CMA resulted in a 3% to 4% higher CNV diagnosis rate in fetuses exhibiting increased NT (≥3.5 mm) without other ultrasound detected anomalies and normal karyotype. Therefore, we suggest using high resolution, non- targeting CMA to provide valuable additional information for prenatal diagnosis. Further, we recommend that a genetics specialist should be consulted to interpret the information appropriately and provide counseling and follow-up services after prenatal CMA.
2.SNP-Based Fetal DNA Detection in Maternal Serum Using the HID-Ion AmpliSeq™ Identity Panel.
Sohee CHO ; Ji Hyun LEE ; Chong Jai KIM ; Moon Young KIM ; Kun Woo KIM ; Doyeong HWANG ; Soong Deok LEE
Korean Journal of Legal Medicine 2017;41(2):41-45
Fetal DNA (fDNA) detection in maternal serum is a challenge due to low copy number and the smaller size of fDNA fragments compared to DNA fragments derived from the mother. Massively parallel sequencing (MPS) is a useful technique for fetal genetic analysis that is able to detect and quantify small amounts of DNA. In this study, seven clinical samples of maternal serum potentially containing fDNA were analyzed with a commercial single nucleotide polymorphism (SNP) panel, the HID-Ion AmpliSeq™ Identity Panel, and the results were compared to those from previous studies. Reference profiles for mothers and fetuses were not available, but multiple Y chromosomal SNPs were detected in two samples, indicating that fDNA was present in the serum and thereby validating observations of autosomal SNPs. This suggests that SNP-based MPS can be valuable for fDNA detection, thereby offering an insight into fetal genetic status. This technology could also be used to detect small amounts of DNA in mixed DNA samples for forensic applications.
DNA*
;
Fetus
;
High-Throughput Nucleotide Sequencing
;
Humans
;
Mothers
;
Polymorphism, Single Nucleotide
3.Expression of the genes for peroxisome proliferator-activated receptor-γ, cyclooxygenase-2, and proinflammatory cytokines in granulosa cells from women with polycystic ovary syndrome.
Joong Yeup LEE ; Jin Cheol TAE ; Chung Hyon KIM ; Doyeong HWANG ; Ki Chul KIM ; Chang Suk SUH ; Seok Hyun KIM
Clinical and Experimental Reproductive Medicine 2017;44(3):146-151
OBJECTIVE: To identify differences in the expression of the genes for peroxisome proliferator-activated receptor (PPAR)-γ, cyclooxygenase (COX)-2, and the proinflammatory cytokines interleukin (IL)-6 and tumor necrosis factor (TNF)-α in granulosa cells (GCs) from polycystic ovary syndrome (PCOS) patients and controls undergoing controlled ovarian stimulation. METHODS: Nine patients with PCOS and six controls were enrolled in this study. On the day of oocyte retrieval, GCs were collected from pooled follicular fluid. Total mRNA was extracted from GCs. Reverse transcription was performed and gene expression levels were quantified by realtime quantitative polymerase chain reaction. RESULTS: There were no significant differences in age, body mass index, and total gonadotropin dose, except for the ratio of luteinizing hormone to follicle-stimulating hormone between the PCOS and control groups. PPAR-γ and COX-2 mRNA was significantly downregulated in the GCs of PCOS women compared with controls (p=0.034 and p=0.018, respectively), but the expression of IL-6 and TNF-α mRNA did not show significant differences. No significant correlation was detected between the expression of these mRNA sequences and clinical characteristics, including the number of retrieved oocytes, oocyte maturity, cleavage, or the good embryo rate. Positive correlations were found among the PPAR-γ, COX-2, IL-6, and TNF-α mRNA levels. CONCLUSION: Our data may provide novel clues regarding ovarian GC dysfunction in PCOS, and indirectly provide evidence that the effect of PPAR-γ agonists in PCOS might result from alterations in the ovarian follicular environment. Further studies with a larger sample size are required to confirm these proposals.
Body Mass Index
;
Cyclooxygenase 2*
;
Cytokines*
;
Embryonic Structures
;
Female
;
Follicle Stimulating Hormone
;
Follicular Fluid
;
Gene Expression
;
Gonadotropins
;
Granulosa Cells*
;
Humans
;
Interleukin-6
;
Interleukins
;
Luteinizing Hormone
;
Oocyte Retrieval
;
Oocytes
;
Ovulation Induction
;
Peroxisomes*
;
Polycystic Ovary Syndrome*
;
Polymerase Chain Reaction
;
PPAR gamma
;
Prostaglandin-Endoperoxide Synthases
;
Reverse Transcription
;
RNA, Messenger
;
Sample Size
;
Tumor Necrosis Factor-alpha
4.Prenatal diagnosis of an unbalanced translocation between chromosome Y and chromosome 15 in a female fetus.
Dongsook LEE ; Heeju PARK ; Sanha KWAK ; Soomin LEE ; Sanghee GO ; Sohyun PARK ; Sukyung JO ; Kichul KIM ; Seunggwan LEE ; Doyeong HWANG
Journal of Genetic Medicine 2016;13(2):95-98
We report the prenatal diagnosis of an unbalanced translocation between chromosome Y and chromosome 15 in a female fetus. Cytogenetic analysis of parental chromosomes revealed that the mother had a normal 46,XX karyotype, whereas the father exhibited a 46,XY,der(15)t(Y;15) karyotype. We performed cytogenetic analysis of the father's family as a result of the father and confirmed the same karyotype in his mother and brother. Fluorescence in situ hybridization and quantitative fluorescent-polymerase chain reaction analysis identified the breakpoint and demonstrated the absence of the SRY gene in female members. Thus, the proband inherited this translocation from the father and grandmother. This makes the prediction of the fetal phenotype possible through assessing the grandmother. Therefore, we suggest that conventional cytogenetic and molecular cytogenetic methods, in combination with family history, provide informative results for prenatal diagnosis and prenatal genetic counseling.
Chromosomes, Human, Pair 15*
;
Cytogenetic Analysis
;
Cytogenetics
;
Fathers
;
Female*
;
Fetus*
;
Fluorescence
;
Genes, sry
;
Genetic Counseling
;
Grandparents
;
Humans
;
In Situ Hybridization
;
Karyotype
;
Mothers
;
Parents
;
Phenotype
;
Prenatal Diagnosis*
;
Sex Chromosome Aberrations
;
Siblings
5.Detection of Adeno-associated Virus from Semen Suffering with Male Factor Infertility and Having Their Conception Partners with Recurrent Miscarriages.
Chung Hyon KIM ; Jung Heon KIM ; Hyun Jung KIM ; Kun Woo KIM ; Joong Yeup LEE ; Soon Ha YANG ; Jin CHOE ; Doyeong HWANG ; Ki Chul KIM ; Eung Soo HWANG
Journal of Bacteriology and Virology 2012;42(4):339-345
Adeno-associated virus (AAV) and human papillomavirus (HPV) DNAs were found in abnormal quality semen, early abortus and female genital tissues. It was suggested that they might cause male infertility and miscarriages. This study was performed to determine the detection rate of these viruses in the semen and to assess the relationship between the presence of virus and male factor infertility and recurrent miscarriages. Sixty-three of 99 recruited male were included in this study according to the completeness of follow-up and the sample availability. Fourteen male with normal reproductive capacity were allocated to control group, 15 male with abnormal results in semen analysis were grouped as male factor infertility (MF) group, and 34 male whose spouses have had history of repeated spontaneous abortions were designated as repeated miscarriage (RM) group. AAV and HPV were detected in semen by polymerase chain reaction. The detection rate of AAV in the MF infertility group and RM group was 60.0% and 50.0%, respectively, while 14.3% in the control group (p < 0.05). However, the differences in the detection rate of HPV were not statistically significant among groups. These results suggest that AAV could be related to repeated miscarriages and male infertility.
Abortion, Habitual
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Abortion, Spontaneous
;
Dependovirus
;
DNA
;
Female
;
Fertilization
;
Follow-Up Studies
;
Humans
;
Infertility
;
Infertility, Male
;
Male
;
Polymerase Chain Reaction
;
Pregnancy
;
Semen
;
Semen Analysis
;
Spouses
;
Stress, Psychological
;
Viruses
6.Outcomes of preimplantation genetic diagnosis using either zona drilling with acidified Tyrode's solution or partial zona dissection.
Hyun Jung KIM ; Chung Hyon KIM ; Soo Min LEE ; Seung Ah CHOE ; Joong Yeup LEE ; Byung Chul JEE ; Doyeong HWANG ; Ki Chul KIM
Clinical and Experimental Reproductive Medicine 2012;39(3):118-124
OBJECTIVE: To review the outcomes of preimplantation genetic diagnosis (PGD) using zona drilling with acid Tyrode's solution (chemical zona pellucida drilling, chemical ZD) and those of partial zona dissection (PZD). METHODS: Clinical outcomes of seventy-one couples undergoing 85 PGD cycles from January 2005 to December 2010 were included. Blastocyst formation and the hatching rate, clinical pregnancy rate, ongoing pregnancy rate, implantation rate, and fetal gender ratio of the PZD and chemical ZD groups were compared. RESULTS: Application of PZD resulted in a significantly higher rate of clinical pregnancy (40.7% vs. 15.4%, p=0.022), ongoing pregnancy (35.6% vs. 11.5%, p=0.023), and implantation (18.1% vs. 5.7%, p=0.007) compared with chemical ZD. Among non-transferred embryos, the rate of blastocyst formation on day 5 (49.1% vs. 39.5%, p=0.016) and hatching on day 6 (47.2% vs. 26.5%, p<0.001) were also significantly higher in the PZD group. CONCLUSION: The mechanical zona dissection method showed better outcomes than chemical ZD in terms of the blastocyst development and pregnancy rate. In this study, the fact that chemical ZD was conducted in different period from mechanical method should be considered in interpreting the result.
Blastocyst
;
Embryonic Structures
;
Family Characteristics
;
Herpes Zoster
;
Isotonic Solutions
;
Mandrillus
;
Pregnancy
;
Pregnancy Rate
;
Preimplantation Diagnosis
;
Prostaglandins D
;
Zona Pellucida
7.Application of Sperm Selection Using Hyaluronic Acid Binding in Intracytoplasmic Sperm Injection Cycles: A Sibling Oocyte Study.
Seung Ah CHOE ; Jin Chul TAE ; Mi Young SHIN ; Hyun Jung KIM ; Chung Hyon KIM ; Joong Yeup LEE ; Doyeong HWANG ; Ki Chul KIM ; Chang Suk SUH ; Byung Chul JEE
Journal of Korean Medical Science 2012;27(12):1569-1573
The purpose of this study was to investigate whether sperm selection by hyaluronic acid (HA) binding could improve fertilization rate and embryo quality in intracytoplasmic sperm injection (ICSI) cycles. Two hundred nineteen oocytes obtained from eighteen women were injected with either HA-bound (n = 107) or conventionally selected spermatozoa (n = 112) in a randomized way. All of the participants were infertile couples who had normal sperm parameters but low fertilization rate in previous in vitro fertilization (IVF) cycle (n = 5) or experienced multiple IVF failures (n = 13). Lower fertilization (75.7% vs 83.0%) and cleavage rate on day 2 (72.9% vs 83.0%) was observed in oocytes injected with HA-bound spermatozoa than the conventional group, but the difference was not significant. Significantly lower cleavage rate was observed on day 3 in HA group (56.0% vs 69.6%, P = 0.038). Blastocyst formation rate and the number of transferred embryos were similar in both groups. In multiple IVF failure patients, significantly reduced fertilization rate (71.8% vs 85.3%, P = 0.046) and cleavage rate on day 2 (70.4% vs 85.3%, P = 0.029) and day 3 (53.5% vs 77.3%, P = 0.002) were noticed in HA group. Five women achieved pregnancy continuing more than 12 weeks after transfer (27.8%). Success of ICSI was not related with the number of embryos fertilized by HA-bound spermatozoa. Application of ICSI by sperm selection using HA binding is not helpful in couples with repeated poor fertilization or implantation despite normal sperm parameters.
Adult
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Blastocyst/cytology
;
Embryo Transfer
;
Female
;
*Fertilization in Vitro
;
Humans
;
Hyaluronic Acid/*pharmacology
;
Infertility, Male/therapy
;
Male
;
Oocytes/cytology/physiology
;
Pregnancy
;
Pregnancy Rate
;
Prospective Studies
;
*Sperm Injections, Intracytoplasmic
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Spermatozoa/*drug effects/physiology
8.The Recurrent Pregnancy Loss Associated with a Female Carrier of a Structural Chromosome Rearrangement.
Soomin LEE ; Sanghee GO ; Sookyung JO ; Sohyun PARK ; Soojin MOON ; Dongsuk LEE ; Ki Chul KIM ; Doyeong HWANG
Journal of Genetic Medicine 2010;7(2):156-159
Inversion, one of the balanced rearrangements, usually does not lead to phenotypic abnormalities; all genetic information exists in the proper amount, merely in a different order or in an abnormal location. However, offspring of an inversion carrier is at risk of chromosomal imbalance because an inversion loop can be formed during crossing-over of the paternal and the maternal chromosomes in meiosis. We report a 38-year-old woman with inversion and balanced translocation and her fetus with unusual rearrangement causing chromosomal imbalance. We performed conventional cytogenetic analysis, MLPA, and subtelomeric FISH in the cells of the embryo. The results showed that the distal portion of chromosome 13q was added to the terminal portion of chromosome 9p during crossing-over. Therefore, the final karyotype of the fetus was 46,XY,rec(9)t(9;13)(p22;q32)inv(9)(p12q13)mat, confirmed using molecular-cytogenetic analyzing tools.
Adult
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Cytogenetic Analysis
;
Embryonic Structures
;
Female
;
Fetus
;
Humans
;
Karyotype
;
Meiosis
;
Pregnancy
9.A Case of a 46,XX Male with SRY Gene.
Jeongyong MIN ; Dong Suk LEE ; Soo Kyung CHO ; Sohyun PARK ; Soomin LEE ; Minkyung BAEK ; Kichul KIM ; Doyeong HWANG
Journal of Genetic Medicine 2008;5(2):145-149
46,XX male is a rare sex constitution characterized by the development of bilateral testis in persons who lack a Y chromosome. Manifestations of 46,XX males are usually hypogonadism, gynecomastia, azoospermia, and hyalinations of seminiferous tubules. The incidence of XX male reversal is approximately 1 in 20,000 male neonates. The SRYgene is located at the short arm of the Y chromosome(Yp11.31) and codes for testis determining factor in humans. Here, the patient, who presented with a normal male phenotype, was referred for azoospermia. Conventional cytogenetic analysis showed a 46,XX karyotype. Quantitative fluorescent polymerase chain reaction(QF-PCR) and Multiplex PCR studies identified SRY gene. And, Fluorescence In Situ Hybridization(FISH) confirmed the SRY gene on the distal short arm of chromosome X. We identified the SRY gene on the distal short arm of chromosome X by molecular cytogenetic and molecular analyses. Therefore, molecular-cytogenetics and molecular studies were proved to be clinically useful adjunctive tool to conventional prenatal cytogenetic analysis.
Arm
;
Azoospermia
;
Constitution and Bylaws
;
Cytogenetic Analysis
;
Cytogenetics
;
Fluorescence
;
Genes, sry
;
Gynecomastia
;
Humans
;
Hyalin
;
Hypogonadism
;
Incidence
;
Infant, Newborn
;
Karyotype
;
Male
;
Multiplex Polymerase Chain Reaction
;
Phenotype
;
Seminiferous Tubules
;
Sex-Determining Region Y Protein
;
Testis
;
Y Chromosome
10.Unbalanced translocation der(8)t(8:13)(p23.3;q32.1)dn identified by array CGH and subtelomeric FISH in a patient with mental retardation.
Soomin LEE ; Dongsuk LEE ; Hyunah JEONG ; Kichul KIM ; Doyeong HWANG
Journal of Genetic Medicine 2008;5(1):65-68
Molecular cytogenetics allows the identification of unknown chromosome rearrangements, which is clinically useful in patients with mental retardation and/or development delay. We report on a 31-year- old woman with severe mental retardation, behavior development delay, and verbal performance delay. Conventional cytogenetic analysis showed a 46,XX,add(8)(p23.3) karyotype. To determine the origin of this unbalanced translocation, we performed array CGH and subtelomeric FISH. The results showed that the distal region of chromosome 8p was added to the terminal of chromosome 13q. This was confirmed the final result of 46,XX,der(8)t(8:13)(p23.3;q32.1)dn.
Cytogenetic Analysis
;
Cytogenetics
;
Female
;
Humans
;
Intellectual Disability
;
Karyotype

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