1.The advantage of topographic prominence-adopted filter for the detection of short-latency spikes of retinal ganglion cells.
Jungryul AHN ; Myoung Hwan CHOI ; Kwangsoo KIM ; Solomon S SENOK ; Dong il Dan CHO ; Kyo in KOO ; Yongsook GOO
The Korean Journal of Physiology and Pharmacology 2017;21(5):555-563
Electrical stimulation through retinal prosthesis elicits both short and long-latency retinal ganglion cell (RGC) spikes. Because the short-latency RGC spike is usually obscured by electrical stimulus artifact, it is very important to isolate spike from stimulus artifact. Previously, we showed that topographic prominence (TP) discriminator based algorithm is valid and useful for artifact subtraction. In this study, we compared the performance of forward backward (FB) filter only vs. TP-adopted FB filter for artifact subtraction. From the extracted retinae of rd1 mice, we recorded RGC spikes with 8×8 multielectrode array (MEA). The recorded signals were classified into four groups by distances between the stimulation and recording electrodes on MEA (200-400, 400-600, 600-800, 800-1000 µm). Fifty cathodic phase-1(st) biphasic current pulses (duration 500 µs, intensity 5, 10, 20, 30, 40, 50, 60 µA) were applied at every 1 sec. We compared false positive error and false negative error in FB filter and TP-adopted FB filter. By implementing TP-adopted FB filter, short-latency spike can be detected better regarding sensitivity and specificity for detecting spikes regardless of the strength of stimulus and the distance between stimulus and recording electrodes.
Animals
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Artifacts
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Electric Stimulation
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Electrodes
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Mice
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Retina
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Retinal Ganglion Cells*
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Retinaldehyde*
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Sensitivity and Specificity
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Visual Prosthesis
2.Identification of molecular markers for the oncogenic differentiation of hepatocellular carcinoma.
Gyung Ran YU ; Seong Hun KIM ; Seon Hwa PARK ; Xiang Dan CUI ; Dong Yuan XU ; Hee Chul YU ; Baik Hwan CHO ; Young Il YEOM ; Sang Soo KIM ; Sang Bae KIM ; In Sun CHU ; Dae Ghon KIM
Experimental & Molecular Medicine 2007;39(5):641-652
The aim of this study was to identify molecular markers associated with oncogenic differentiation in hepatocellular carcinoma (HCC). Using an unsupervised clustering method with a cDNA microarray, HCC (T) gene expression profiles and corresponding non-tumor tissues (NT) from 40 patients were analyzed. Of total 217 genes, 72 were expressed preferentially in HCC tissues. Among 186 differentially regulated genes, there were molecular chaperone and tumor suppressor gene clusters in the Edmondson grades I and II (GI/II) subclass compared with the liver cirrhosis (LC) subclass. The Edmondson grades III and IV (GIII/IV) subclass with a poor survival (P = 0.0133) contained 122 differentially regulated genes with a cluster containing various metastasis- and invasion-related genes compared with the GI/II subclass. Immunohistochemical analysis revealed that ANXA2, one of the 72 genes preferentially expressed in HCC, was over-expressed in the sinusoidal endothelium and in malignant hepatocytes in HCC. The genes identified in the HCC subclasses will be useful molecular markers for the genesis and progression of HCC. In addition, ANXA2 might be a novel marker for tumor angiogenesis in HCC.
Annexin A2/genetics
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Carcinoma, Hepatocellular/*genetics/pathology
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Gene Expression Profiling
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Genes, Tumor Suppressor
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Humans
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Liver Neoplasms/*genetics/pathology
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Molecular Chaperones/genetics
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Multigene Family
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Oligonucleotide Array Sequence Analysis
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Oncogenes
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Tumor Markers, Biological/*genetics