1.Single nucleotide polymorphisms of the DGKK gene and hypospadias in Chinese children.
Li-kai ZHUANG ; Min WU ; Wei-jing YE ; Yi-dong LIU
National Journal of Andrology 2014;20(11):991-994
OBJECTIVETo investigate the role of single nucleotide polymorphisms of the gene of diacylglycerol kinase κ (DGKK) in hypospadias in Chinese children.
METHODSWe performed direct sequencing on 2 hypospadias-related candidate single nucleotide polymorphisms of the DGKK gene (rs1934179 and rs7063116, never previously reported in the Chinese population) from 300 children with sporadic hypospadias and 200 healthy controls, and compared the results between the two groups.
RESULTSThe mutation frequencies of rs1934179 and rs7063116 were 5.0% (15/300) and 5.67% (17/300) respectively in the hypospadias patients, significantly higher than 1.5% (3/200) and 2.0% (4/200) in the normal controls (P <0.05). The mutation frequencies of rs1934179 and rs7063116 in the cases of distal and middle hypospadias were also remarkably higher (6.5%, [13/200] and 7.5% [15/200], P <0.05), but those in the proximal cases (both 2.0% [2/100]) showed no statistically significant difference from the control (P >0.05).
CONCLUSIONThe polymorphisms of the DGKK gene may be associated with hypospadias, particularly distal and middle hypospadias, in Chinese children.
Asian Continental Ancestry Group ; Case-Control Studies ; Child ; China ; Diacylglycerol Kinase ; genetics ; Humans ; Hypospadias ; enzymology ; genetics ; Male ; Polymorphism, Single Nucleotide
2.Association between diacylglycerol kinase kappa variants and hypospadias susceptibility in a Han Chinese population.
Hua XIE ; Xiao-Ling LIN ; Song ZHANG ; Ling YU ; Xiao-Xi LI ; Yi-Chen HUANG ; Yi-Qing LYU ; Hai-Tao CHEN ; Jianfeng XU ; Fang CHEN
Asian Journal of Andrology 2018;20(1):85-89
Previous genome-wide association studies have identified variants in the diacylglycerol kinase kappa (DGKK) gene associated with hypospadias in populations of European descent. However, no variants of DGKK were confirmed to be associated with hypospadias in a recent Han Chinese study population, likely due to the limited number of single-nucleotide polymorphisms (SNPs) included in the analysis. In this study, we aimed to address the inconsistent results and evaluate the association between DGKK and hypospadias in the Han Chinese population through a more comprehensive analysis of DGKK variants. We conducted association analyses for 17 SNPs in or downstream of DGKK with hypospadias among 322 cases (58 mild, 113 moderate, 128 severe, and 23 unknown) and 1008 controls. Five SNPs (rs2211122, rs4554617, rs7058226, rs7063116, and rs5915254) in DGKK were significantly associated with hypospadias (P < 0.05), with odds ratios (ORs) of 1.64-1.76. When only mild and moderate cases were compared to controls, 10 SNPs in DGKK were significant (P < 0.05), with ORs of 1.56-2.13. No significant SNP was observed when only severe cases were compared to controls. This study successfully implicated DGKK variants in hypospadias risk among a Han Chinese population, especially for mild/moderate cases. Severe forms of hypospadias are likely due to other genetic factors.
Asian People
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Case-Control Studies
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Child
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China/epidemiology*
;
Diacylglycerol Kinase/genetics*
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Genetic Predisposition to Disease/genetics*
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Genetic Variation/genetics*
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Genome-Wide Association Study
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Haplotypes
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Humans
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Hypospadias/genetics*
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Linkage Disequilibrium
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Male
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Polymorphism, Single Nucleotide/genetics*
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Risk Assessment
3.Differential protein expression of etoposide-treated CaSki cervical carcinoma cells.
Seung Baek LEE ; Jun Sang BAE ; Jung Jin KIM ; Seo Yun TONG ; Eun Kyoung YIM ; Keun Ho LEE ; Chan Joo KIM ; Soo Jong UM ; Jong Sup PARK
Korean Journal of Gynecologic Oncology 2005;16(4):333-346
OBJECTIVE: This study was designed to examine the pharmaco-dynamic pattern of proteomic expression in cervical carcinoma cells (CaSki cell line; HPV-16 positive) after in vitro treatment by the etoposide. METHODS: We analyzed proteomic profiling in cervical carcinoma cells after etoposide treatment using two-dimensional gel electrophoresis (2-DE) with MALDI-TOF-MS used for protein identification. Then, we tested the several experimental methods for verification and functional identification, including MTT assay, PI staining, DNA fragmentation assay, FDA, FACS and Western blot analysis. RESULTS: Etoposide inhibited the CaSki cervical cancer cell growth in a dose-dependent manner and the optimal concentration of etoposide is 2micrometer(IC50) in the CaSki cervical cancer cells. The etoposide induced apoptosis, as determined by DNA fragmentation assay, FACS, and Western blot. The etoposide increased the protein expression of Fas (Apo-1/CD95), p53, pRb and caspase-3, but decreased the level of Bcl-2 and caspase-3 precursor and subsequently triggered the mitochondrial apoptotic pathway (release of cytochrome c and activation of caspase-9). To this end, we analyzed CaSki cancer cells using 2-DE. Eight proteins (XAP-5, HXC-36, serine/threonine protein phosphatase 2B catalytic subunit, G2/mitotic-specific cyclin B1, T-box transcription factor TBX20, diacylglycerol kinase, amiloride-sensitive amine oxidase, HEF-like protein, ras-related protein Rab-20) were down-regulated and nine proteins (RNA 3'-terminal phosphate cyclase-like protein, late endosomal/lysosomal Mp1 interacting protein, glia maturation factor, replication protein A 14 kDa subunit, mago sashi protein homolog, 14 kDa phosphohistidine phosphatase, protein C14 or f48, cyclin-dependent kinase 4 inhibitior A, retinoic acid-binding protein II) were up-regulated in etoposide-treated CaSki cells when compared with non-treated cells. CONCLUSION: Our results clearly indicate that etoposide induced cell death by apoptosis. These findings may provide insights into the mechanisms underlying the apparent anti-tumoral effects of etoposide.
Apoptosis
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Blotting, Western
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Calcineurin
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Caspase 3
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Catalytic Domain
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Cell Death
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Cell Line
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Cyclin B1
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Cyclin-Dependent Kinase 4
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Cytochromes c
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Diacylglycerol Kinase
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DNA Fragmentation
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Electrophoresis, Gel, Two-Dimensional
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Etoposide
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Glia Maturation Factor
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Human papillomavirus 16
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Oxidoreductases
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Proteomics
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Replication Protein A
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Transcription Factors
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Uterine Cervical Neoplasms
4.Microarray Analysis of Gene Expression in Rat Glioma after Ethanol Treatment.
So Hee LEE ; Dong Yul OH ; Jin Hee HAN ; Ihn Geun CHOI ; Yang Whan JEON ; Joon Noh LEE ; Tae Kyung LEE ; Jong Hyun JEONG ; Kyung Hwa JUNG ; Young Gyu CHAI
Journal of the Korean Society of Biological Psychiatry 2007;14(2):115-121
Objetives: Identification of target genes for ethanol in neurons is important for understanding its molecular and cellular mechanism of action and the neuropathological changes seen in alcoholics. The purpose of this study is to identify of altered gene expression after acute treatmet of ethanol in rat gliom cells. METHODS: We used high density cDNA microarray chip to measure the expression patterns of multiple genes in cultured rat glioma cells. DNA microarrays allow for the simultaneous measurement of the expression of several hundreds of genes. RESULTS: After comparing hybridized signals between control and ethanol treated groups, we found that treatment with ethanol increased the expression of 15 genes and decreased the expression of 12 genes. Upregulated genes included Orthodenticle(Drosophila) homolog 1, procollagen type II, adenosine A2a receptor, GATA-bindning protein 2. Downregulated genes included diacylglycerol kinase beta, PRKC, Protein phosphatase 1, clathrin-associated protein 17, nucleoporin p58, proteasome. CONCLUSION: The gene changes noted were those related to the regulation of transcription, signal transduction, second messenger systems. modulation of ischemic brain injury, and neurodengeneration.Although some of the genes were previously known to be ethanol responsive, we have for the most part identified novel genes involved in the brain response to ethanol.
Alcoholics
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Animals
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Brain
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Brain Injuries
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Collagen Type II
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Diacylglycerol Kinase
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Ethanol*
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Gene Expression*
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Glioma*
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Humans
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Microarray Analysis*
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Neurons
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Nuclear Pore Complex Proteins
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Oligonucleotide Array Sequence Analysis
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Proteasome Endopeptidase Complex
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Protein Phosphatase 1
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Rats*
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Receptor, Adenosine A2A
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Second Messenger Systems
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Signal Transduction