1.Cloning and polymorphism analysis of prtH gene from Porphyromonas gingivalis.
Ying ZHENG ; Sheng-hui YANG ; Wei ZHOU ; Chun-mei ZHANG ; Fu-ping ZHANG ; Xiao-ping DONG
Chinese Journal of Stomatology 2003;38(1):27-30
OBJECTIVETo clone the prtH gene from Porphyromonas gingivalis (P.g) ATCC 33277 and analyze the polymorphism of prtH gene from 5 strains of P.g in order to explore the relationship between P.g and periodontitis.
METHODSUsing PCR, the prtH was amplified and cloned into pGEM-T vector. To illustrate the prtH polymorphism among P.g strains, the genomic DNAs were extracted and screened by PCR with three pairs of specific primers, dot blot and Southern blot hybridization using the biotin-labeled prtH sequence as probe.
RESULTSRecombinant DNA pGEM-T- prtH was verified by restriction endonuclease and sequence assay. Strain W 381 and ATCC 33277 showed the identical results in PCR and hybridization assays, whereas strain ATCC 49417 and 14-3-2 revealed individual hybridization patterns. Strain 47A-1 seemed even not to contain prtH gene.
CONCLUSIONSDifferent prtH gene sequences exist in different P.g strains. This polymorphism may indicate various potential virulent effects during the infection and pathogenesis. Established PCR protocol is sensitive for identification of prtH gene.
Bacterial Proteins ; Blotting, Southern ; Cloning, Molecular ; Cysteine Endopeptidases ; genetics ; DNA, Bacterial ; genetics ; metabolism ; Deoxyribonuclease BamHI ; metabolism ; Deoxyribonuclease HindIII ; metabolism ; Polymorphism, Genetic ; Porphyromonas gingivalis ; genetics ; Species Specificity
2.Plasmid Profile and B - Lactamase Type of Multidrug - Resistant Salmonella typhi Isolated from Korea, 1997.
Jung Sik YOO ; Young Hack SHIN ; Kyung Soo OH ; Jeom Kyu LEE ; Ki Sang KIM
Journal of the Korean Society for Microbiology 1999;34(5):445-452
Eight strains of multidrug-resistant (MDR) Salmonella typhi were isolated from Kyonggi area during January-February,1997. They were resistant to ampiciUin, amoxicillin, carbeniciillin, tetracycline, chloramphenicol, trimethoprim/sulfamethoxazole, trimethoprim. Eight strains had one plasmid respectively which size was approximately M.W 220 kb and showed same restriction pattern by endonuclease HindIII. The plasmid was similar to the plasmid in size that was related to multidrug resistant S. typhi isolated from southeast Asia. It were transferred by conjugation to recipient E, coli K-12 in frequency of 2.43 x10-4 - 1.73 x 10-2 and transconjugant showed same drug-resistant pattem with donor cells. All of 8 strains produced B-lactamase that was assummed to TEM-1 type by isoelectric focusing and PCR.
Amoxicillin
;
Asia, Southeastern
;
Chloramphenicol
;
Deoxyribonuclease HindIII
;
Gyeonggi-do
;
Humans
;
Isoelectric Focusing
;
Korea*
;
Plasmids*
;
Polymerase Chain Reaction
;
Salmonella typhi*
;
Salmonella*
;
Tetracycline
;
Tissue Donors
;
Trimethoprim
3.Study on lipoprotein lipase gene Hind III polymorphism in Chinese type IIb hyperlipoproteinemia.
Rong ZHANG ; Yu LIU ; Lu-chuan YANG ; Huai BAI ; Bing-wen LIU
Chinese Journal of Medical Genetics 2003;20(6):539-541
OBJECTIVETo investigate whether lipoprotein lipase (LPL) gene Hind III polymorphism is associated with Chinese type IIb hyperlipoproteinemia.
METHODSLipoprotein lipase gene Hind III polymorphism was studied using polymerase chain reaction (PCR) and restriction fragment length polymorphisms (RFLP) in 103 type IIb hyperlipoproteinemia patients and 129 healthy subjects from a population of Chinese Hans in Chengdu area.
RESULTSBoth in type IIb hyperlipoproteinemia group and control group, the H+H+ homozygote was the major allelotype. The H+ allelic frequency of type IIb hyperlipoproteinemia group was higher than that of control group (0.864 vs 0.705, P<0.01). But the H- allelic frequency of type IIb hyperlipoproteinemia group was significantly lower than that of control group (0.136 vs 0.295, P<0.01). The plasma triglycerides (TG) level of H+H+ genotype was significantly higher than that of H+H- and H-H- genotypes (P<0.05 and P<0.01); the plasma TC level and TG/HDL C ratio were higher than those of H+H- and H-H- genotypes (P<0.05); apoA II levels of H+H+ and H+H- genotypes were significantly lower than that of H-H- genotype (P<0.01 and P<0.05).
CONCLUSIONThe Hind III RFLP at intron 8 of LPL gene is associated with type II b hyperlipoproteinemia to some extent in Chinese population.
Adult ; Aged ; Deoxyribonuclease HindIII ; Female ; Genotype ; Humans ; Hyperlipoproteinemia Type II ; genetics ; Lipoprotein Lipase ; genetics ; Male ; Middle Aged ; Polymorphism, Restriction Fragment Length
4.Correlativity between the polymorphisms of aldosterone synthase gene, Hind III restriction site on Y chromosome and essential hypertension.
Qing-xiang LI ; Hai GAO ; Fang-xing XU ; Yu-qing ZHANG ; Hai-ying WU ; Hong-bing YAN ; Guo-zhang LIU
Chinese Journal of Medical Genetics 2006;23(3):294-297
OBJECTIVETo investigate the relationship of associating the polymorphisms of CYP11B2 -344C/T and Hind III restriction site on Y chromosome with essential hypertension.
METHODSThis study enrolled 654 patients with essential hypertension and 386 healthy subjects as control group. The genomic DNA was extracted from blood leukocytes. The DNA segments of CYP11B2 and Y chromosome were amplified from genomic DNA by polymerase chain reaction (PCR). The PCR products were digested with Hae III or Hind III at 37 degrees centigrade respectively. The digested products were subjected to agarose gel electrophoresis and stain with ethidium bromide.
RESULTS(1)The Hind III (-) genotype was found at 42.0% for patients with essential hypertension and 32.9% for control. The Hind III (-) genotype frequency of hypertension patient was significantly higher than that of the control (P was 0.03). The Hind III (+) genotype had a lower SBP and DBP than the Hind III (-) genotype (P was 0.01, P was 0.03). (2)With combining CC or CT genotype with Hind III (-) genotype, the relative risk suffering from hypertension was 1.998 fold high (P was 0.01).
CONCLUSIONThe polymorphism of Hind III restriction site on Y chromosome is associated with essential hypertension, and when combined with polymorphism of CYP11B2 -344C/T, may have a united role to increase the risk of suffering from hypertension disease.
Adult ; Aged ; Alleles ; Binding Sites ; genetics ; Chromosomes, Human, Y ; genetics ; Cytochrome P-450 CYP11B2 ; genetics ; Deoxyribonuclease HindIII ; metabolism ; Female ; Gene Frequency ; Genotype ; Humans ; Hypertension ; genetics ; Male ; Middle Aged ; Polymerase Chain Reaction ; Polymorphism, Genetic ; genetics
5.A rapid method for preparation of plasmid DNA for screening recombinant clones.
Xu-Dong GUO ; Shu-Yan MAO ; Dong-Xia HOU ; Shorgan BOU
Chinese Journal of Biotechnology 2007;23(1):176-178
A simple and rapid method for preparation of plasmid DNA from overnight incubation was introduced. It does not require any additional reagents; the incubation mixture containing recombinant plasmid DNA was just mixed with H2O and phenol/chloroform/isoamyl alcohol in certain ratio. After vortexing and spinning of the mixture, the supernatant could be directly loaded onto agarose gel and analyzed using electrophoresis. The whole preparation requires only 3-5 minutes. So to quickly screen recombinant clones, this method is better compared with traditional methods.
Centrifugation, Density Gradient
;
Chloroform
;
chemistry
;
Cloning, Molecular
;
methods
;
DNA, Bacterial
;
genetics
;
isolation & purification
;
metabolism
;
Deoxyribonuclease HindIII
;
metabolism
;
Electrophoresis
;
Escherichia coli
;
genetics
;
Pentanols
;
chemistry
;
Phenol
;
chemistry
;
Plasmids
;
chemistry
;
genetics
;
Reproducibility of Results
;
Time Factors
;
Water
;
chemistry