1.G and P Genotyping of Human Rotavirus Isolated in a University Hospital in Korea: Implications for Nosocomial Infections.
Jung Oak KANG ; Chang Ryul KIM ; Paul E KILGORE ; Tae Yeal CHOI
Journal of Korean Medical Science 2006;21(6):983-988
To characterize rotavirus G and P genotypes circulating among infants and young children hospitalized with severe diarrhea in a university hospital in Gyeonggi province, Korea, and to examine any association of the genotypes and nosocomial infections, we genotyped 103 isolates of rotavirus by multiplex RT-PCR. In July 2001-June 2002, we found that globally common strains constituted 64.2% (G2P[4] 28.3%, G3P[8] 28.3%, G4P[8] 5.7%, and G1P[8] 1.9%), and the uncommon strain, G4P[6], constituted 26.4%. During July 2002-June 2003, the percentage of common strains decreased to 44.0% (G3P[8] 18.0%, G2P[4] 16.8%, and G1P[8] 10.0%), but G4P[6] increased to 36.0%. G9P[8] was identified in 10.0% of cases, and thus can be considered an emerging strain in Korea. Eight-eight percent of G4P[6] was isolated from newborn babies. Among the 103 patients, there was an evidence of nosocomial rotavirus infection in 23 children (22.3%). Of these, 19 (82.6%) were newborns infected with G4P[6] strains of rotavirus. Most of the children who acquired rotavirus infection nosocomially showed symptoms of diarrhea, vomiting, fever, poor sucking, or dehydration, regardless of the genotype. This study revealed that G4P[6] has been the major genotype causing nosocomial rotavirus infection in our hospital.
Rotavirus Infections/classification/*microbiology
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Rotavirus/*classification/*genetics
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Male
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Infant
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Humans
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Genotype
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Feces/microbiology
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Diarrhea/*microbiology
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Cross Infection/classification/*microbiology
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Child, Preschool
2.G and P Genotyping of Human Rotavirus Isolated in a University Hospital in Korea: Implications for Nosocomial Infections.
Jung Oak KANG ; Chang Ryul KIM ; Paul E KILGORE ; Tae Yeal CHOI
Journal of Korean Medical Science 2006;21(6):983-988
To characterize rotavirus G and P genotypes circulating among infants and young children hospitalized with severe diarrhea in a university hospital in Gyeonggi province, Korea, and to examine any association of the genotypes and nosocomial infections, we genotyped 103 isolates of rotavirus by multiplex RT-PCR. In July 2001-June 2002, we found that globally common strains constituted 64.2% (G2P[4] 28.3%, G3P[8] 28.3%, G4P[8] 5.7%, and G1P[8] 1.9%), and the uncommon strain, G4P[6], constituted 26.4%. During July 2002-June 2003, the percentage of common strains decreased to 44.0% (G3P[8] 18.0%, G2P[4] 16.8%, and G1P[8] 10.0%), but G4P[6] increased to 36.0%. G9P[8] was identified in 10.0% of cases, and thus can be considered an emerging strain in Korea. Eight-eight percent of G4P[6] was isolated from newborn babies. Among the 103 patients, there was an evidence of nosocomial rotavirus infection in 23 children (22.3%). Of these, 19 (82.6%) were newborns infected with G4P[6] strains of rotavirus. Most of the children who acquired rotavirus infection nosocomially showed symptoms of diarrhea, vomiting, fever, poor sucking, or dehydration, regardless of the genotype. This study revealed that G4P[6] has been the major genotype causing nosocomial rotavirus infection in our hospital.
Rotavirus Infections/classification/*microbiology
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Rotavirus/*classification/*genetics
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Male
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Infant
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Humans
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Genotype
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Feces/microbiology
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Diarrhea/*microbiology
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Cross Infection/classification/*microbiology
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Child, Preschool
5.Pathogenic bacteria distribution and drug resistance analysis in burns department.
Chinese Journal of Surgery 2007;45(13):898-901
OBJECTIVETo study the distribution and drug resistance of pathogenic bacterium and find the proper measures of infection control.
METHODSSix hundred and eighty-two pathogenic bacteria strains were isolated and cultured from samples collected from January 2003 to December 2005. The pathogenic bacterium distribution and antibiotic resistance were analyzed.
RESULTSThe detection rate of gram-negative bacteria was higher than gram-positive ones. The gram-positive bacteria accounted for 292 strains (42.8%), in which the detection rate of staphylococcus aureus is highest (16.7% of total) and the detection rate of methicillin-resistant staphylococcus aureus accounted for 82.5% in staphylococcus aureus strains. Among 372 gram-negative bacteria strains (54.5%), the detection rate of bacillus aeruginosa, escherichia coli, baumannii and enterobacter cloacae were 12.5%, 11.1%, 9.1% and 8.2% respectively; extended-spectrum beta-lactamases (ESBLs) were detected in 45 (60.8%) escherichia coli and 9 (42.9%) klebsiella pneumoniae strains. Eighteen strains of fungus were found, and it decreased in last 2 years. The detection rate of opportunistic pathogenic bacteria and the antibiotic resistant strains kept increasing in the 3 years.
CONCLUSIONSDrug resistance of pathogenic bacterium is very serious in burns department. The irrational use of broad-spectrum antibiotics and the antibiotic detection of pathogenic bacterium are all contributed to the drug resistance. It is important to enhance the asepsis, prevent hospital infection, detect the pathogenic bacteria and use antibiotics rationally in burns department.
Bacteria ; classification ; drug effects ; isolation & purification ; Burns ; microbiology ; Cross Infection ; microbiology ; Drug Resistance, Bacterial ; Humans ; Microbial Sensitivity Tests
7.Community-associated methicillin-resistant Staphylococcus aureus: overview and local situation.
Limin WIJAYA ; Li-Yang HSU ; Asok KURUP
Annals of the Academy of Medicine, Singapore 2006;35(7):479-486
INTRODUCTIONCommunity-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) has emerged worldwide. In contrast to healthcare-associated MRSA (HA-MRSA), CA-MRSA isolates are usually susceptible to multiple non-beta-lactam antibiotics and cause a distinct spectrum of infections in epidemiologically disparate populations - in particular, cutaneous abscesses, necrotising fasciitis and necrotising pneumonia. They arise from a broader genetic background, and possess differing virulence genes. We aim to describe the distribution of different molecular subtypes of CA-MRSA among various regions and discuss briefly the implications of CA-MRSA from a local perspective.
METHODSLiterature review of articles on CA-MRSA, focusing mainly on reports where the genetic background of isolates had been analysed using multi-locus sequence typing (MLST). Singapore data were obtained from the local CA-MRSA database.
RESULTSMLST analysis demonstrated the presence of epidemic subtypes of CA-MRSA within most geographic areas. In parts of the United States, community MRSA infections currently exceed those caused by their methicillin-susceptible counterparts. In Singapore, CA-MRSA infections are increasing, predominantly as a result of the spread of ST30 clones.
CONCLUSIONAvailable evidence suggests that the emergence of MRSA from the community is not going to be a transient phenomenon. Local guidelines for dealing with this phenomenon at both therapeutic and preventive levels are needed prior to the potential development of a situation mirroring that of meso-endemic HA-MRSA in local hospitals or CA-MRSA epidemics in parts of USA.
Bacterial Typing Techniques ; Community-Acquired Infections ; epidemiology ; microbiology ; Cross Infection ; diagnosis ; microbiology ; Humans ; Methicillin Resistance ; Risk Factors ; Singapore ; epidemiology ; Staphylococcal Infections ; epidemiology ; microbiology ; Staphylococcus aureus ; classification ; drug effects
8.Study on risk factors and molecular typing of Acinetobacter baummanii in nosocomial infections.
Ding LIU ; Ping CHEN ; Wei CHEN ; Xiang-qun LIAN ; Zhi-hai YU
Chinese Journal of Epidemiology 2003;24(2):140-142
OBJECTIVETo study the risk factors of Acinetobacter baummanii in nosocomial infections, and to verify the nature of Acinetobacter baumannii strains isolated from intensive care unit (ICU).
METHODSA hundred and fourty patients associated with nosocomial infection of Acinetobacter baummanii from four teaching hospitals were selected and compared with controls through a case control study to identify risk factors. The strains isolated from the ICU were typed by polymerase chain reaction (PCR) with the primer M(13) following electrophoresis in agarose gel.
RESULTSThe odds ratios (ORs) were: state of the illness (OR = 8.69), using immunosuppressant (OR = 4.85), mechanical ventilation (OR = 3.68) and treatment with 3 kinds of antibiotics (OR = 3.014). Data from PCR studies indicated that these strains were sharing identical band pattern from the five strains.
CONCLUSIONRisk factors for nosocomial infection with Acinetobacter baummanii included state of an illness, immunosuppressant, mechanical ventilation, and treatment with antibiotics. A multidrug-resistant strains of Acinetobacter baumannii was identified in ICU.
Acinetobacter baumannii ; classification ; genetics ; Cross Infection ; etiology ; microbiology ; Genotype ; Humans ; Logistic Models ; Polymerase Chain Reaction ; Risk Factors
9.Nosocomial Infection Surveillance in a Tuberculosis Specialized Hospital in China.
Zhong Yao XIE ; Guo Fang HUANG ; Hui GAO ; Yu Qing CHI ; Yan Xia WANG ; Yu PANG ; Jing Ping WANG
Biomedical and Environmental Sciences 2017;30(9):691-694
Nosocomial infections (NIs) are a critical issue affecting the quality of healthcare. In this study, we performed a retrospective study to explore the incidence rates, mortality rates, and microbial spectrum of NIs in Beijing Chest Hospital, a tuberculosis (TB) specialized hospital in China. Our data demonstrate that the overall incidence rate of inpatients with NIs slightly decreased from 2012 to 2016, which may be associated with the implementation of hand hygiene measures, while the mortality rates associated with NI did not significantly change. In addition, the species distribution of NIs was quite different from that presented in previous reports, and Klebsiella pneumoniae was the most frequently isolated microorganism.
Bacteria
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classification
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isolation & purification
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Beijing
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Cross Infection
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epidemiology
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microbiology
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mortality
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Hospitals, Chronic Disease
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Humans
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Infection Control
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Population Surveillance
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Retrospective Studies
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Tuberculosis
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epidemiology
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therapy
10.Transmission and molecular characteristics of carbapenem-resistant Acinetobacter baumannii.
Xing WEI ; Ding-Xia SHEN ; Zhong-Qiang YAN ; Yan-Ping LUO ; Jing-Rong CAO
Chinese Journal of Epidemiology 2008;29(3):277-281
OBJECTIVETo study the mode of transmission and molecular characteristics on carbapenem-resistant Acinetobacter baumannii strain. Strains were isolated from different parts of samples in various patients.
METHODSClinical information of carbapenem-resistant Acinetobacter baumannii isolates were stored and analyzed by WHONET 5.4 software. The transmission and pathopoiesis of the strains were learned through case file review. Genotypes of isolates were identified by pulse-field gel electrophoresis (PFGE) and genes of carbapenemase were detected by multiple PCR, in order to find molecular characteristics and relatedness between strains.
RESULTS29 stains of Acinetobacter baumannii resistant to carbapenem were isolated from 2 or more kinds of samples among 13 patients'. Two genotypes were identified by PFGE: genotype A was obtained from 22 isolates in 11 patients and genotype B was obtained from 7 isolates in 4 patients. PCR amplification showed that all strains possessed OXA-23 gene except 1, and all strains possessed Integrase gene I except 3.
CONCLUSIONThere were 2 different genotypes from 29 strains of carbapenem-resistant Acinetobacter baumannii with Genotype A as the main type. OXA-23 carbapenemase gene and integrase gene I were detected from most of the isolates. All the strains could be easily transmitted in the body of the patients and among patients, hence becoming the epidemic pathogen of iatrogenic infection.
Acinetobacter Infections ; microbiology ; transmission ; Acinetobacter baumannii ; classification ; drug effects ; genetics ; Carbapenems ; pharmacology ; Cross Infection ; microbiology ; transmission ; Drug Resistance, Bacterial ; genetics ; Genotype ; Humans