1.Analysis of COL1A1 and COL1A2 gene variants in two fetuses with osteogenesis imperfecta.
Yaning ZHANG ; Xinyue WU ; Qiaoyun LIU ; Xiaona YAN ; Huize LIU ; Dairong FENG
Chinese Journal of Medical Genetics 2023;40(7):821-827
OBJECTIVE:
To explore the genetic basis of two fetuses with an osteogenesis imperfecta (OI) phenotype.
METHODS:
Two fetuses diagnosed at the Affiliated Hospital of Weifang Medical College respectively on June 11, 2021 and October 16, 2021 were selected as the study subjects. Clinical data of the fetuses were collected. Amniotic fluid samples of the fetuses and peripheral blood samples of their pedigree members were collected for the extraction of genomic DNA. Whole exome sequencing (WES) and Sanger sequencing were carried out to identify the candidate variants. Minigene splicing reporter analysis was used to validate the variant which may affect the pre-mRNA splicing.
RESULTS:
For fetus 1, ultrasonography at 17+6 weeks of gestation had revealed shortening of bilateral humerus and femurs by more than two weeks, in addition with multiple fractures and angular deformities of long bones. WES revealed that fetus 1 had harbored a heterozygous c.3949_3950insGGCATGT (p.N1317Rfs*114) variant in exon 49 of the COL1A1 gene (NM_000088.4). Based on the guidelines from the American College of Medical Genetics and Genomics (ACMG), it was classified as a pathogenic variant (PVS1+PS2+PM2_Supporting) for disrupting the downstream open reading frame resulting in premature translational termination, being de novo in origin, and lacking records in the population and disease databases.For fetus 2, ultrasonography at 23 weeks of gestation also revealed shortening of bilateral humerus and femurs by one and four weeks, respectively, in addition with bending of bilateral femurs, tibias and fibulas. Fetus 2 had harbored a heterozygous c.1557+3A>G variant in intron 26 of the COL1A2 gene (NM_000089.4). Minigene experiment showed that it has induced skipping of exon 26 from the COL1A2 mRNA transcript, resulting in an in-frame deletion (c.1504_1557del) of the COL1A2 mRNA transcript. The variant was inherited from its father and had been previously reported in a family with OI type 4. It was therefore classified as a pathogenic variant (PS3+PM1+PM2_Supporting+PP3+PP5).
CONCLUSION
The c.3949_3950insGGCATGT (p.N1317Rfs*114) variant in the COL1A1 gene and c.1557+3A>G variant in the COL1A2 gene probably underlay the disease in the two fetuses. Above findings not only have enriched the mutational spectrum of OI, but also shed light on the correlation between its genotype and phenotype and provided a basis for genetic counseling and prenatal diagnosis for the affected pedigrees.
Pregnancy
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Female
;
Humans
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Osteogenesis Imperfecta/genetics*
;
Collagen Type I, alpha 1 Chain
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Collagen Type I/genetics*
;
Mutation
;
Fetus
2.Cryptic COL1A1-PDGFB fusion in dermatofibrosarcoma protuberans: a clinicopathological and genetic analysis.
Min CHEN ; Yu Mei CHEN ; Yang LU ; Xin HE ; Heng PENG ; Hong Ying ZHANG
Chinese Journal of Pathology 2023;52(1):13-18
Objective: To investigate the clinicopathological and cytogenetic features of cryptic COL1A1-PDGFB fusion dermatofibrosarcoma protuberans (CC-DFSP). Methods: Three cases of CC-DFSP diagnosed in West China Hospital, Sichuan University, Chengdu, China from January 2021 to September 2021 were studied. Immunohistochemistry for CD34 and other markers, fluorescence in situ hybridization (FISH) for PDGFB, COL1A1-PDGFB and COL1A1, next-generation sequencing (NGS), reverse-transcriptase polymerase chain reaction (RT-PCR) and Sanger sequencing were performed. Results: There were three cases of CC-DFSP, including two females and one male. The patients were 29, 44 and 32 years old, respectively. The sites were abdominal wall, caruncle and scapula. Microscopically, they were poorly circumscribed. The spindle cells of the tumors infiltrated into the whole dermis or subcutaneous tissues, typically arranging in a storiform pattern. Immunohistochemically, the neoplastic cells exhibited diffuse CD34 expression, but were negative for S-100, SMA, and Myogenin. Loss of H3K27me3 was not observed in the tumor cells. The Ki-67 index was 10%-15%. The 3 cases were all negative for PDGFB rearrangement and COL1A1-PDGFB fusion, whereas showing unbalanced rearrangement for COL1A1. Case 1 showed a COL1A1 (exon 31)-PDGFB (exon 2) fusion using NGS, which was further validated through RT-PCR and Sanger sequencing. All patients underwent extended surgical resection. Except for case 3 with recurrence 2 years after surgical resection, the other 2 cases showed no recurrence or metastasis during the follow-up. Conclusions: FISH has shown its validity for detecting PDGFB rearrangement and COL1A1-PDGFB fusion and widely applied in clinical detection. However, for cases with negative routine FISH screening that were highly suspicious for DFSPs, supplementary NGS or at least COL1A1 break-apart FISH screening could be helpful to identify cryptic COL1A1-PDGFB fusions or other variant fusions.
Female
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Humans
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Male
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Collagen Type I, alpha 1 Chain
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Dermatofibrosarcoma/pathology*
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In Situ Hybridization, Fluorescence
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Oncogene Proteins, Fusion/genetics*
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Proto-Oncogene Proteins c-sis/genetics*
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Skin Neoplasms/pathology*
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Adult
3.Effect of naringin combined with bone morphogenetic protein-2 on the proliferation and differentiation of MC3T3-E1 cells.
West China Journal of Stomatology 2017;35(3):275-280
OBJECTIVEThis study evaluates the biological effects of naringin (NAR) joint bone morphogenetic protein (BMP)-2 on the proliferation, alkaline phosphatase (ALP) activity, and expression of osteoblastogenic genes, such as Runt-related transcription factor 2 (Runx2), collagen Ⅰ (ColⅠ), ALP, and osteocalcin (OCN) of pre-osteoblasts.
METHODSThree different NAR concentrations (10, 100, and 1 000 μmol·L⁻¹) were applied, alone or combined with BMP-2(50 ng·mL⁻¹), to restore the osteoblastogenesis of pre-osteoblasts (MC3T3-E1 cell line). Cell numbers (proliferation) were evaluated at first, fourth, and seventh days by Alamar blue assay. ALP activity and the expression of osteoblastogenic genes, such as Runx2, ColⅠ, ALP, and OCN were analyzed by quantitative real-time polymerase chain reaction (qRT-PCR) at fourth and seventh day.
RESULTSStimulation by NAR alone and in combination with BMP-2 for 1 day and 4 days could promote cell proliferation, which peaked at a concentration of 100 μmol·L⁻¹ NAR combined with BMP-2 could promote cell proliferation significantly (P<0.05). Stimulation by NAR alone and in combination with BMP-2 for 4 and 7 days could promote ALP activity and bone-related gene(ALP, OCN, Runx2, ColⅠ) expression. ALP expression was significantly promoted after stimulation of 100 μmol·L⁻¹ NAR and BMP-2 (P<0.05).
CONCLUSIONSNAR exhibits promising potential for improving MC3T3-E1 proliferation and differentiation, and appropriate concentrations of NAR and BMP-2 show synergistic effect. .
Bone Morphogenetic Protein 2 ; Bone and Bones ; Cell Count ; Cell Differentiation ; Cell Line ; Cell Proliferation ; Collagen Type I ; Core Binding Factor Alpha 1 Subunit ; Flavanones ; pharmacology ; Osteoblasts ; Osteocalcin ; Real-Time Polymerase Chain Reaction
4.Research of osteoblasts and mineralization culture method induced dental pulp stem cells into osteoblasts.
Yu-ying WANG ; Hui-yuan YUN ; Hong-ying MIAO ; Wei-ping HU
Chinese Journal of Stomatology 2012;47(6):364-368
OBJECTIVETo find an ideal method inducing dental pulp stem cells (DPSC) osteogenic differentiation. To compare the effect of co-culture method and that of mineralizing culture medium.
METHODSDPSC were co-cultured with osteoblasts using cell culture inserts system as experiment group, and DPSC were cultured in mineralizing culture medium as control group. The cell morphology and ultrastructure and mineralized nodes were analyzed under phase contrast microscope, transmission electron microscope, and alizarin red S staning. Bone sialoprotein (BSP), Runx-2, osteocalcin, and collagen-1 (Col-1) osteoblastic genes expressions of DPSC cultivated in special niche of osteoblasts were assayed by reverse transcription polymerase chain reaction (RT-PCR).
RESULTSThe mineralization nudoles of experiment group were more than control group. Fifteen days later, BSP and Col-1 genes in the DPSC of co-cultures were 9.807 ± 1.135 and 2.913 ± 0.310, respectively. And those in the DPSC of mineralizing culture medium were 6.478 ± 0.781 and 1.703 ± 0.184, respectively. Co-cultures and mineralizing were significantly different (P < 0.05).
CONCLUSIONSAs osteoblasts can secret lots of osteogenic cell cytokines, they have more significant effect than mineralizing culture medium on osteogenesis of DPSC.
Cell Differentiation ; Coculture Techniques ; Collagen Type I ; metabolism ; Core Binding Factor Alpha 1 Subunit ; metabolism ; Dental Pulp ; cytology ; Gene Expression Regulation, Developmental ; Humans ; Integrin-Binding Sialoprotein ; metabolism ; Microscopy, Electron, Transmission ; Microscopy, Phase-Contrast ; Osteoblasts ; cytology ; Osteocalcin ; metabolism ; Osteogenesis ; Reverse Transcriptase Polymerase Chain Reaction ; Stem Cells ; cytology ; metabolism ; ultrastructure
5.Effect of genistein on rat femoral bone metabolic activity in vitro.
Jian ZHOU ; Bao-Feng GE ; Ke-Ming CHEN ; Xiao-Ni MA ; Kui CHENG ; Xiao-Yu GUO ; Xiang LÜ
Acta Pharmaceutica Sinica 2013;48(6):960-964
This study is to investigate effects of genistein on rat femoral bone metabolic in vitro. Rat femoral tissues was isolated and randomly divided into two groups including control group and genistein (1 x 10(-5) mol x(-1)) group. Determinations of alkaline phosphatase (ALP) activity, calcium content and osteoprotegerin (OPG), type I-collagen (Collagen-I), RANKL, Runx-2 and bone morphogenetic protein (BMP-2) mRNA expression were done by real-time PCR. The results showed that 1 x 10(-5) mol x L(-1) genistein could increase the activity of ALP and contents of Ca, regulate bone metabolism activity of OPG, RANKL, BMP-2, Collagen-I and Runx-2 mRNA expression level. Genistein can significantly modulate bone metabolism related gene expression level of rat femoral tissue in vitro, and can increase calcium content and the activity of ALP.
Alkaline Phosphatase
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metabolism
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Animals
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Bone Morphogenetic Protein 2
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genetics
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metabolism
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Calcium
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metabolism
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Collagen Type I
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genetics
;
metabolism
;
Core Binding Factor Alpha 1 Subunit
;
genetics
;
metabolism
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Enzyme Activation
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drug effects
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Femur
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metabolism
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Gene Expression Regulation
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Genistein
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pharmacology
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Osteoprotegerin
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genetics
;
metabolism
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Phytoestrogens
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pharmacology
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RANK Ligand
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genetics
;
metabolism
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RNA, Messenger
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metabolism
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Random Allocation
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Rats
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Rats, Sprague-Dawley
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Real-Time Polymerase Chain Reaction
6.Recombinant amelogenin regulates the bioactivity of mouse cementoblasts in vitro.
Sema S HAKKI ; S Buket BOZKURT ; Emre TÜRKAY ; Michel DARD ; Nuhan PURALI ; Werner GÖTZ
International Journal of Oral Science 2018;10(2):15-15
Amelogenin (AMG) is a cell adhesion molecule that has an important role in the mineralization of enamel and regulates events during dental development and root formation. The purpose of the present study was to investigate the effects of recombinant human AMG (rhAMG) on mineralized tissue-associated genes in cementoblasts. Immortalized mouse cementoblasts (OCCM-30) were treated with different concentrations (0.1, 1, 10, 100, 1000, 10,000, 100,000 ng · mL) of recombinant human AMG (rhAMG) and analyzed for proliferation, mineralization and mRNA expression of bone sialoprotein (BSP), osteocalcin (OCN), collagen type I (COL I), osteopontin (OPN), runt-related transcription factor 2 (Runx2), cementum attachment protein (CAP), and alkaline phosphatase (ALP) genes using quantitative RT-PCR. The dose response of rhAMG was evaluated using a real-time cell analyzer. Total RNA was isolated on day 3, and cell mineralization was assessed using von Kossa staining on day 8. COL I, OPN and lysosomal-associated membrane protein-1 (LAMP-1), which is a cell surface binding site for amelogenin, were evaluated using immunocytochemistry. F-actin bundles were imaged using confocal microscopy. rhAMG at a concentration of 100,000 ng · mL increased cell proliferation after 72 h compared to the other concentrations and the untreated control group. rhAMG (100,000 ng · mL) upregulated BSP and OCN mRNA expression levels eightfold and fivefold, respectively. rhAMG at a concentration of 100,000 ng · mL remarkably enhanced LAMP-1 staining in cementoblasts. Increased numbers of mineralized nodules were observed at concentrations of 10,000 and 100,000 ng · mL rhAMG. The present data suggest that rhAMG is a potent regulator of gene expression in cementoblasts and support the potential application of rhAMG in therapies aimed at fast regeneration of damaged periodontal tissue.
Alkaline Phosphatase
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metabolism
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Amelogenin
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physiology
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Animals
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Biomarkers
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metabolism
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Calcification, Physiologic
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Cell Adhesion Molecules
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metabolism
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Cell Proliferation
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Cementogenesis
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physiology
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Collagen Type I
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metabolism
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Core Binding Factor Alpha 1 Subunit
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metabolism
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Gene Expression Regulation
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In Vitro Techniques
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Integrin-Binding Sialoprotein
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metabolism
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Mice
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Microscopy, Confocal
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Osteocalcin
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metabolism
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Osteopontin
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metabolism
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Real-Time Polymerase Chain Reaction