1.Cloning of a pore-forming subunit of ATP-sensitive potassium channel from Clonorchis sinensis.
Seung Young HWANG ; Hye Jin HAN ; So Hee KIM ; Sae Gwang PARK ; Dae Hyun SEOG ; Na Ri KIM ; Jin HAN ; Joon Yong CHUNG ; Weon Gyu KHO
The Korean Journal of Parasitology 2003;41(2):129-133
A complete cDNA sequence encoding a pore-forming subunit (Kir6.2) of ATP-senstive potassium channel in the adult worm, Clonorchis sinensis, termed CsKir6.2, was isolated from an adult cDNA library. The cDNA contained a single open-reading frame of 333 amino acids, which has a structural motif (a GFG-motif) of the putative pore-forming loop of the Kir6.2. Peculiarly, the CsKir6.2 shows a lack-sequence structure, which deleted 57 amino acids were deleted from its N-terminus. The predicted amino acid sequence revealed a highly conserved sequence as other known other Kir6.2 subunits. The mRNA was weekly expressed in the adult worm.
Adenosine Triphosphate/metabolism
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Amino Acid Sequence
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Animals
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Base Sequence
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Cloning, Molecular
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Clonorchis sinensis/*genetics/metabolism
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Helminth Proteins/*genetics/metabolism
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Human
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Molecular Sequence Data
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Potassium Channels, Inwardly Rectifying/*genetics/metabolism
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RNA, Helminth/chemistry/genetics
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Sequence Alignment
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Support, Non-U.S. Gov't
2.Identification and Molecular Characterization of Parkin in Clonorchis sinensis.
Xuelian BAI ; Tae Im KIM ; Ji Yun LEE ; Fuhong DAI ; Sung Jong HONG
The Korean Journal of Parasitology 2015;53(1):65-75
Clonorchis sinensis habitating in the bile duct of mammals causes clonorchiasis endemic in East Asian countries. Parkin is a RING-between-RING protein and has E3-ubiquitin ligase activity catalyzing ubiquitination and degradation of substrate proteins. A cDNA clone of C. sinensis was predicted to encode a polypeptide homologous to parkin (CsParkin) including 5 domains (Ubl, RING0, RING1, IBR, and RING2). The cysteine and histidine residues binding to Zn2+ were all conserved and participated in formation of tertiary structural RINGs. Conserved residues were also an E2-binding site in RING1 domain and a catalytic cysteine residue in the RING2 domain. Native CsParkin was determined to have an estimated molecular weight of 45.7 kDa from C. sinensis adults by immunoblotting. CsParkin revealed E3-ubiquitin ligase activity and higher expression in metacercariae than in adults. CsParkin was localized in the locomotive and male reproductive organs of C. sinensis adults, and extensively in metacercariae. Parkin has been found to participate in regulating mitochondrial function and energy metabolism in mammalian cells. From these results, it is suggested that CsParkin play roles in energy metabolism of the locomotive organs, and possibly in protein metabolism of the reproductive organs of C. sinensis.
Amino Acid Sequence
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Animals
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Clonorchis sinensis/*enzymology
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Cluster Analysis
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Conserved Sequence
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DNA, Complementary/genetics
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Energy Metabolism
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Gene Expression Profiling
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Mitochondria/metabolism
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Models, Molecular
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Molecular Weight
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Phylogeny
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Protein Conformation
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Sequence Homology, Amino Acid
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Ubiquitin-Protein Ligases/chemistry/*genetics/*metabolism
3.Identification and Molecular Characterization of Parkin in Clonorchis sinensis.
Xuelian BAI ; Tae Im KIM ; Ji Yun LEE ; Fuhong DAI ; Sung Jong HONG
The Korean Journal of Parasitology 2015;53(1):65-75
Clonorchis sinensis habitating in the bile duct of mammals causes clonorchiasis endemic in East Asian countries. Parkin is a RING-between-RING protein and has E3-ubiquitin ligase activity catalyzing ubiquitination and degradation of substrate proteins. A cDNA clone of C. sinensis was predicted to encode a polypeptide homologous to parkin (CsParkin) including 5 domains (Ubl, RING0, RING1, IBR, and RING2). The cysteine and histidine residues binding to Zn2+ were all conserved and participated in formation of tertiary structural RINGs. Conserved residues were also an E2-binding site in RING1 domain and a catalytic cysteine residue in the RING2 domain. Native CsParkin was determined to have an estimated molecular weight of 45.7 kDa from C. sinensis adults by immunoblotting. CsParkin revealed E3-ubiquitin ligase activity and higher expression in metacercariae than in adults. CsParkin was localized in the locomotive and male reproductive organs of C. sinensis adults, and extensively in metacercariae. Parkin has been found to participate in regulating mitochondrial function and energy metabolism in mammalian cells. From these results, it is suggested that CsParkin play roles in energy metabolism of the locomotive organs, and possibly in protein metabolism of the reproductive organs of C. sinensis.
Amino Acid Sequence
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Animals
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Clonorchis sinensis/*enzymology
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Cluster Analysis
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Conserved Sequence
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DNA, Complementary/genetics
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Energy Metabolism
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Gene Expression Profiling
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Mitochondria/metabolism
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Models, Molecular
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Molecular Weight
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Phylogeny
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Protein Conformation
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Sequence Homology, Amino Acid
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Ubiquitin-Protein Ligases/chemistry/*genetics/*metabolism
4.Variation of nuclear and mitochondrial DNAs in Korean and Chinese isolates of Clonorchis sinensis.
The Korean Journal of Parasitology 2004;42(3):145-148
We compared the DNA sequence difference of isolates of Clonorchis sinensis from one Korean (Kimhae) and two Chinese areas (Guangxi and Shenyang). The sequences of nuclear rDNA (18S, internal transcribed spacer 1 and 2: ITS1 and ITS2) and mitochondrial DNA (cytochrome c oxidase subunit 1: cox1) were compared. A very few intraspecific nucleotide substitution of the 18S, ITS1, ITS2 and cox1 was found among three isolates of C. sinensis and a few nucleotide insertion and deletion of ITS1 were detected. The 18S, ITS1, ITS2 and cox1 sequences were highly conserved among three isolates. These findings indicated that the Korean and two Chinese isolates are similar at the DNA sequence level.
Animals
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Base Sequence
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China
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Clonorchis sinensis/enzymology/*genetics
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Comparative Study
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DNA, Helminth/chemistry/*genetics
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DNA, Mitochondrial/chemistry/*genetics
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DNA, Ribosomal/chemistry/genetics
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DNA, Ribosomal Spacer/chemistry
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Electron Transport Complex IV/genetics
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Genetic Markers
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Korea
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Molecular Sequence Data
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RNA, Ribosomal, 18S/genetics
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Research Support, Non-U.S. Gov't
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Sequence Alignment
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Species Specificity
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*Variation (Genetics)
5.Molecular Cloning and Characterization of a Paramyosin from Clonorchis sinensis.
Tae Joon PARK ; Jung Mi KANG ; Byoung Kuk NA ; Woon Mok SOHN
The Korean Journal of Parasitology 2009;47(4):359-367
Paramyosin is a myofibrillar protein present in helminth parasites and plays multifunctional roles in host-parasite interactions. In this study, we identified the gene encoding paramyosin of Clonorchis sinensis (CsPmy) and characterized biochemical and immunological properties of its recombinant protein. CsPmy showed a high level of sequence identity with paramyosin from other helminth parasites. Recombinant CsPmy (rCsPmy) expressed in bacteria had an approximate molecular weight of 100 kDa and bound both human collagen and complement 9. The protein was constitutively expressed in various developmental stages of the parasite. Imunofluorescence analysis revealed that CsPmy was mainly localized in the tegument, subtegumental muscles, and the muscle layer surrounding the intestine of the parasite. The rCsPmy showed high levels of positive reactions (74.6%, 56/75) against sera from patients with clonorchiasis. Immunization of experimental rats with rCsPmy evoked high levels of IgG production. These results collectively suggest that CsPmy is a multifunctional protein that not only contributes to the muscle layer structure but also to non-muscular functions in host-parasite interactions. Successful induction of host IgG production also suggests that CsPmy can be applied as a diagnostic antigen and/or vaccine candidate for clonorchiasis.
Amino Acid Sequence
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Animal Structures/chemistry
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Animals
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Antibodies, Helminth/blood
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Cloning, Molecular
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Clonorchis sinensis/chemistry/*genetics
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Collagen/metabolism
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Complement C9/metabolism
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Helminth Proteins/chemistry/*genetics/immunology/metabolism
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Immunoglobulin G/blood
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Molecular Sequence Data
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Molecular Weight
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Protein Binding
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Rats
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Rats, Sprague-Dawley
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Sequence Alignment
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Sequence Analysis, DNA
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Sequence Homology, Amino Acid
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Tropomyosin/chemistry/*genetics/immunology/metabolism
6.Human Infections with Liver and Minute Intestinal Flukes in Guangxi, China: Analysis by DNA Sequencing, Ultrasonography, and Immunoaffinity Chromatography.
Hyeong Kyu JEON ; Dongmin LEE ; Hansol PARK ; Duk Young MIN ; Han Jong RIM ; Hongman ZHANG ; Yichao YANG ; Xueming LI ; Keeseon S EOM
The Korean Journal of Parasitology 2012;50(4):391-394
The prevalence of liver and intestinal fluke infections was determined by surveying inhabitants of Hengxuan, Fusui, and Shanglin villages which were known to be endemic for liver flukes in Guangxi, China in May 2010. A total of 718 people were examined for helminth eggs by the Kato-Katz thick smear technique, ultrasonography, immunoaffinity chromatography, and DNA sequencing. The overall egg positive rate was found to be 59.6% (28.0-70.6%) that included mixed infections with liver and intestinal flukes. Cases showing higher than 20,000 eggs per gram of feces (EPG) were detected between 1.3% and 16.2%. Ultrasonographic findings exhibited overall 28.2% (72 of 255 cases) dilatation rate of the intrahepatic bile duct. Clonorchis sinensis infection was detected serologically in 88.3% (38 of 43 cases) among C. sinensis egg positive subjects by the immunoaffinity chromatography using a specific antigen for C. sinensis. For differential diagnosis of the liver and intestinal flukes, more precise PCR and nucleotide sequencing for copro-DNA were performed for 46 egg positive cases. Mixed infections with C. sinensis and Metagonimus yokogawai were detected in 8 of 46 egg positive cases, whereas 29 specimens were positive for Haplorchis taichui. Ultrasonographic findings and immunoaffinity chromatography results showed usefulness, even in a limited way, in figuring out of the liver fluke endemicity.
Animals
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China/epidemiology
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Chromatography, Affinity
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Clonorchiasis/*epidemiology/parasitology/ultrasonography
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Clonorchis sinensis/genetics/immunology/*isolation & purification
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Coinfection
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DNA, Helminth/chemistry/genetics
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Feces/parasitology
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Female
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Heterophyidae/genetics/*isolation & purification
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Humans
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Intestines/*parasitology
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Liver/*parasitology
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Parasite Egg Count
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Polymerase Chain Reaction
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Prevalence
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Sequence Analysis, DNA
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Trematode Infections/*epidemiology/parasitology/ultrasonography