1.Detection and typing of human papillomavirus by a GeXP based multiplex PCR assay.
Chun-bin LU ; Meng-jie YANG ; Le LUO ; Miao WANG ; Xue-jun MA
Chinese Journal of Experimental and Clinical Virology 2011;25(1):69-72
OBJECTIVETo establish a new and rapid GeXP based multiplex PCR assay for the detection and typing of human papillomavirus 6, 11, 31, 33 and 52.
METHODSNucleotide sequences of HPV6, HPV11, HPV31, HPV33 and HPV52 from NCBI were obtained and compared. Genotype-specific primers were then designed and the sensitivity and specificity of multiple PCR assay was evaluated. Optimized assay was further validated with 30 clinical specimens collected from the cervical secretions of patients.
RESULTSA GeXP based multiplex PCR was developed for sensitive detection and reliable differentiation of five HPV genotypes (HPV6, 11, 31, 33 and 52),
CONCLUSIONA GeXP based multiplex PCR assay is demonstrated to be a new and rapid technique for simultaneous detection and typing of 5 different human papillomaviruses.
Adult ; Female ; Humans ; Middle Aged ; Papillomaviridae ; classification ; genetics ; isolation & purification ; Polymerase Chain Reaction ; methods
3.Colorimetric detection of HPV6 and HPV16 by loop mediated isothermal amplification.
Chun-bin LU ; Le LUO ; Meng-jie YANG ; Kai NIE ; Miao WANG ; Xue-Jun MA
Chinese Journal of Virology 2011;27(1):64-70
A simple, rapid and sensitive colorimetric loop mediated isothermal amplification (LAMP) method was established to detect HPV6 and HPV 16 respectively. The method employed a set of four specially designed primers that recognized six distinct sequences of HPV6-E6 or HPV16-E7 for amplification of nucleic acid under isothermal conditions at 63 degrees C for one hour. The amplification process of LAMP was monitored by the addition of HNB (hydroxy naphthol blue) dye prior to amplification. A positive reaction was indicated by a color change from violet to sky blue and confirmed by real-time turbidimeter and agarose electrophoresis. Thirteen cervical swab samples having single infection with 13 different HPV genotypes were examined to evaluate the specificity. A serial dilution of a cloned plasmid containing HPV-E6 or HPV-E7 gene was examined to evaluate the sensitivity. The results showed that no cross-reaction with other HPV genotypes was observed. The colorimetric LAMP assay could achieve a sensitivity of 1000 copies, 10-20 times lower than that of real-time PCR. The assay was further evaluated with 62 clinical specimens and consistent results were obtained compared with the detection using Kai Pu HPV Genotyping Kit. We concluded that this colorimetric LAMP assay had potential usefulness for the rapid screening of the HPV6 or HPV16 infection in the laboratories and hospitals of provincial and municipal region in China.
Colorimetry
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methods
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DNA Primers
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chemistry
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genetics
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Genotype
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Human papillomavirus 16
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genetics
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isolation & purification
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Human papillomavirus 6
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genetics
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isolation & purification
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Humans
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Nucleic Acid Amplification Techniques
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instrumentation
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methods
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Papillomavirus Infections
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virology
4.An improved association-mining research for exploring Chinese herbal property theory: based on data of the Shennong's Classic of Materia Medica.
Rui JIN ; E-mail: ZHANGBING6@263.NET. ; Zhi-jian LIN ; Chun-miao XUE ; Bing ZHANG
Journal of Integrative Medicine 2013;11(5):352-365
Knowledge Discovery in Databases is gaining attention and raising new hopes for traditional Chinese medicine (TCM) researchers. It is a useful tool in understanding and deciphering TCM theories. Aiming for a better understanding of Chinese herbal property theory (CHPT), this paper performed an improved association rule learning to analyze semistructured text in the book entitled Shennong's Classic of Materia Medica. The text was firstly annotated and transformed to well-structured multidimensional data. Subsequently, an Apriori algorithm was employed for producing association rules after the sensitivity analysis of parameters. From the confirmed 120 resulting rules that described the intrinsic relationships between herbal property (qi, flavor and their combinations) and herbal efficacy, two novel fundamental principles underlying CHPT were acquired and further elucidated: (1) the many-to-one mapping of herbal efficacy to herbal property; (2) the nonrandom overlap between the related efficacy of qi and flavor. This work provided an innovative knowledge about CHPT, which would be helpful for its modern research.
Data Mining
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Drugs, Chinese Herbal
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Humans
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Materia Medica
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Medicine, Chinese Traditional
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Qi
5.Nasopharyngeal adenoid cystic carcinoma: magnetic resonance imaging features in ten cases.
Xue-Wen LIU ; Chuan-Miao XIE ; Hui LI ; Rong ZHANG ; Zhi-Jun GENG ; Yun-Xian MO ; Jing ZHAO ; Mu-Yan CAI ; Yan-Chun LV ; Pei-Hong WU
Chinese Journal of Cancer 2012;31(1):19-28
Nasopharyngeal adenoid cystic carcinoma (NACC) is a rare malignancy with high local invasiveness. To date, there is no consensus on the imaging characteristics of NACC. To address this, we retrospectively reviewed 10 cases of NACC and summarized the magnetic resonance imaging (MRI) features. MR images of 10 patients with histologically validated NACC were reviewed by two experienced radiologists. The location, shape, margin, signal intensity, lesion texture, contrast enhancement patterns, local invasion, and cervical lymphadenopathy of all tumors were evaluated. Clinical and pathologic records were also reviewed. No patients were positive for antibodies against Epstein-Barr virus (EBV). The imaging patterns of primary tumors were classified into two types as determined by location, shape, and margin. Of all patients, 7 had tumors with a type 1 imaging pattern and 3 had tumors with a type 2 imaging pattern. The 4 tubular NACCs were all homogeneous tumors, whereas 3 (60%) of 5 cribriform NACCs and the sole solid NACC were heterogeneous tumors with separations or central necrosis on MR images. Five patients had perineural infiltration and intracranial involvement, and only 2 had cervical lymphadenopathy. Based on these results, we conclude that NACC is a local, aggressive neoplasm that is often negative for EBV infection and associated with a low incidence of cervical lymphadenopathy. Furthermore, MRI features of NACC vary in locations and histological subtypes.
Adult
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Aged
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Carcinoma, Adenoid Cystic
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diagnosis
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pathology
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surgery
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Female
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Humans
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Lymphatic Metastasis
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Magnetic Resonance Imaging
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methods
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Male
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Middle Aged
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Nasopharyngeal Neoplasms
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diagnosis
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pathology
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surgery
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Neoplasm Invasiveness
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Neoplasm Staging
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Retrospective Studies
6.Solid neuroendocrine breast carcinoma: mammographic and sonographic features in thirteen cases.
Jing WU ; Qiu-Xia YANG ; Yao-Pan WU ; De-Ling WANG ; Xue-Wen LIU ; Chun-Yan CUI ; Ling WANG ; Yao CHEN ; Chuan-Miao XIE ; Rong ZHANG
Chinese Journal of Cancer 2012;31(11):549-556
This study aimed to determine and quantitate the mammographic and sonographic characteristics in 13 cases of solid neuroendocrine breast carcinoma (NEBC) and to analyze the association of radiological findings with the clinical and histopathologic findings. The clinical data and imaging findings of 13 female patients with histologically confirmed solid NEBC were reviewed. Imaging data were evaluated by two radiologists for a consensual diagnosis. All patients presented with one palpable mass; only 1 experienced occasional breast pain, and 5 complained of fluid discharge. In 7 patients, the masses were firm and mobile. Regional lymph node metastasis was noted in only 1 patient. For the 10 patients who underwent mammography, 6 had a mass, 1 had clustered small nodules with clustered punctuate microcalcifications, 2 had asymmetric focal density, and 1 had solitary punctuate calcification. Most of the masses had irregular shape with indistinct or microlobulated margins. For the 9 patients who underwent ultrasonography (US), 9 masses were depicted, all of which were hypoechoic, mostly with irregular shape and without acoustic phenomena. Different types of acoustic phenomena were also identified. One patient had developed distant metastases during follow-up. NEBC has a variety of presentations, but it is mostly observed on mammograms as a dense, irregular mass with indistinct or microlobulated margins. Sonographically, it typically presents as an irregular, heterogeneously hypoechoic mass with normal sound transmission. Histories of nipple discharge and calcification observed using imaging are not rare.
Adult
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Aged
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Biopsy, Fine-Needle
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Breast Neoplasms
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diagnostic imaging
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metabolism
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pathology
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Calcinosis
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diagnostic imaging
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Carcinoma, Neuroendocrine
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diagnostic imaging
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metabolism
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pathology
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Chromogranin A
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metabolism
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Female
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Follow-Up Studies
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Humans
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Ki-67 Antigen
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metabolism
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Lymphatic Metastasis
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Mammography
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Middle Aged
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Phosphopyruvate Hydratase
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metabolism
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Receptors, Estrogen
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metabolism
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Receptors, Progesterone
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metabolism
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Synaptophysin
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metabolism
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Ultrasonography, Mammary
7.Study on growth and dry substance accumulation of Curcuma longa.
Qing-Miao LI ; Chun-Mei ZHANG ; Mei ZHANG ; Guang-Ming SHU ; Xue-Mei TANG ; Yan-Li XIA ; Jia-Lun LEI
China Journal of Chinese Materia Medica 2008;33(6):621-623
OBJECTIVETo explore the growth characteristics of Curcuma longa, and provide basis for standardized cultivation.
METHODPlant samples were collected and investigated periodically.
RESULTAccording to the growth of different parts and the characteristics of dry substance accumulation of C. longa, the development of C. longa could be divided into five stages: emergence of seedlings, seedling, leaf, root tuber expansion, and dry substance accumulation of root tuber. In terms of number, leaf of C. longa increases gradually from one at first to eight at the final stage. Leaf size increases at a very low speed at the stage of seedling. However, leaves expands their sizes at a much higher speed at the stage of leaf. The dry substance in different parts accumulates increasingly with the development of C. longa dry substance mainly accumulates in leaves at the stage of leaf, and in rhizome at the stage of root tuber expansion. At the final stage, it mainly accumulates in root tuber.
CONCLUSIONCultivation technologies of C. longa and the relevant management methods could be established according to the growth of different parts of C. longa and the characteristics of dry substance accumulation in different stages.
Curcuma ; anatomy & histology ; growth & development ; metabolism ; Desiccation ; Drugs, Chinese Herbal ; metabolism ; Plant Leaves ; anatomy & histology ; growth & development ; metabolism ; Plant Roots ; anatomy & histology ; growth & development ; metabolism
8.Killing effect of double suicide genes mediated by retroviral vector on k562 cells.
Yi-Rong JIANG ; Ying-Chang LAI ; Xiao-Lin CHEN ; De-Sheng WAN ; Wan-Ning CHEN ; Miao-Hua QI ; Chun-Sheng LIU ; Xue-Liang CHEN ; Dao-Xin MA
Journal of Experimental Hematology 2007;15(1):47-51
The aim of study was to investigate the killing effect of double suicide gene system mediated by retroviral vector on K562 cells in vivo and ex vivo. CDglyTK gene was transfected into PA317 cells by using lipofectamine. K562 cells were infected with viral supernatant. K562/CDglyTK cells were treated with 5-fluorocytosine (5-FC) and/or ganciclovir (GCV). Mice were randomly divided into three groups: tumor formation, tumor inhibition and tumor therapy. Each mouse was implanted with K562/CDglyTK cells or K562 cells. The results indicated that the killing effect of 5-FC in combination with GCV on K562/CDglyTK was more significant than using 5-FC or GCV alone. In vivo study showed that after being injected subcutaneously with K562 cells and K562/CDglyTK cells, there was not obvious difference in tumor formation rate of mice, 5-FC + GCV could suppress tumor formation of the K562/CDglyTK cells. After being treated with 5-FC and GCV, the median tumor volume of mice implanted with K562/CDglyTK cells decreased obviously, compared with the control group. Their median survival was significantly prolonged. It is concluded that double suicide genes are more effective for killing effect on K562 cells in vivo and in ex vivo. It may be applicable to clinical gene therapy.
Cytosine Deaminase
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genetics
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Flucytosine
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pharmacology
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Ganciclovir
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pharmacology
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Genes, Transgenic, Suicide
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genetics
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Genetic Therapy
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Genetic Vectors
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genetics
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Humans
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K562 Cells
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Protein-Tyrosine Kinases
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genetics
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Receptor Protein-Tyrosine Kinases
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biosynthesis
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genetics
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Recombinant Fusion Proteins
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genetics
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Recombination, Genetic
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Retroviridae
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genetics
9.Effect of chinese herbal drug-containing serum for activating-blood and dispelling-toxin on ox-LDL-induced inflammatory factors' expression in endothelial cells.
Yue-Rong JIANG ; Yu MIAO ; Lin YANG ; Mei XUE ; Chun-Yu GUO ; Xiao-Juan MA ; Hui-Jun YIN ; Da-Zhuo SHI ; Ke-Ji CHEN
Chinese journal of integrative medicine 2012;18(1):30-33
OBJECTIVETo investigate the effects of drug-containing serum of Chinese herbal compound, Xiongshao Capsule (, XS, for activating-blood) and Huanglian Capsule (, HL, for dispellingtoxin) on the oxidized low-density lipoprotein (ox-LDL)-induced inflammatory factors in human umbilical vein endothelial cells (HUVECs).
METHODSThirty-two rats were randomly divided into four groups: the blank control group treated with distilled water, the positive control group treated with simvastatin (1.8 mg/kg), the test group I treated with Chinese herbal compound of XS (0.135 g/kg), and the test group II treated with Chinese herbal compound of XS (0.135 g/kg) and HL (0.135 g/kg). All the treatments were administered for 7 successive days by gastrogavage. Rats' blood serum was harvested 1 h after the last administration to prepare respective drugcontaining serum. HUVECs were exposed to ox-LDL (100 μg/mL) to induce cell injury model and incubated with corresponding drug-containing serum for 24 h. Untreated HUVECs were set for blank control. Levels of interleukin-6 (IL-6), tumor necrosis factor-α (TNF-α), and soluble intercellular adhesion molecule-1 (sICAM-1) in supernatant of cultured HUVECs were determined by enzyme-linked immunosorbent assay (ELISA). HUVEC surface expressions of ICAM-1 and E-selectin were determined by flow cytometry.
RESULTSLevels of IL-6, TNF-α, and sICAM-1 in the supernatant of HUVECs as well as the cell surface expressions of ICAM-1 and E-selectin significantly increased after 24-h ox-LDL stimulation (P<0.01), while the abnormal elevations, except sICAM-1 in the test group I, were all reduced in the treated groups (the positive control and the two test groups) significantly (P<0.01 or P<0.05). Besides, the effect in the test group II seemed somewhat higher than that in the test group I but with no statistical significance (P>0.05).
CONCLUSIONDrug-containing serum of XS plus HL has a certain inhibitory effect on the vascular endothelial inflammation response induced by ox-LDL.
Animals ; Capsules ; Cell Membrane ; drug effects ; metabolism ; Drugs, Chinese Herbal ; pharmacology ; E-Selectin ; metabolism ; Human Umbilical Vein Endothelial Cells ; drug effects ; metabolism ; Humans ; Inflammation Mediators ; metabolism ; Intercellular Adhesion Molecule-1 ; metabolism ; Interleukin-6 ; metabolism ; Lipoproteins, LDL ; metabolism ; Rats ; Rats, Wistar ; Solubility ; drug effects ; Subcellular Fractions ; drug effects ; metabolism ; Toxins, Biological ; metabolism ; Tumor Necrosis Factor-alpha ; metabolism
10.Construction of an infectious clone of pseudorabies virus strain ZJ genome maintained as a bacterial artificial chromosome.
Wen-Ling YIN ; Long-Bo YIN ; Wei-Cheng YE ; Xue-Qiang SUN ; Huo-Chun YAO ; Miao-Tao ZHANG ; Yi-Cheng WANG ; Cun ZHANG
Chinese Journal of Virology 2010;26(4):330-335
pHA2 plasmid sequence,with Bacterial Artificial Chromosome(BAC) vector and the GFP expression cassette, was introduced into the UL23(TK) gene of Pseudorabies virus(PRV)strain ZJ by homologous recombination,and the recombinant PRV (rPRV-HA2) was confirmed and isolated by plaque purification. The circular genome of rPRV-HA2 was electroporated into Escherichia coli strain DH10B and then the PRV BAC (pPRV) was recovered. The transfection of pPRV into VeroE6 cells resulted in productive infection. The rescued virus isolated following transfection was indistinguishable from rPRV-HA2 in cytopathic effects (CPE) and replication curve in vitro. The growth kinetics of the viruses indicated that partial deletion of TK gene and BAC vector insertion had no effect on the viral titre and plaque size in vitro. The PRV BAC system will enable quick and reliable manipulation of the viral genome for the functional investigation on the PRV genes and the development of PRV vector in vaccine.
Animals
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Cercopithecus aethiops
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Chromosomes, Artificial, Bacterial
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genetics
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Genome, Viral
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Herpesvirus 1, Suid
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genetics
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physiology
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Pseudorabies
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virology
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Recombination, Genetic
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Swine
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Swine Diseases
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virology
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Vero Cells
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Virus Replication