1.Cloning and analysis of HMGR gene conserved fragments in Atractylodes lancea
Qun LIU ; Xiaoying CAO ; Jihong JIANG ; Chuanchao DAI
Chinese Traditional and Herbal Drugs 1994;0(10):-
Objective To clone and sequence cDNA encoding 3-hydroxy-3-methylglutaryl-coenzyme A reductase(HMGR) from Atractylodes lancea.Methods The cDNA,encoding HMGR in A.lancea,was amplified by RACE strategy with the cDNA of the total RNA of young leaves as the template.The partial fragments of HMGR were cloned and sequenced.Results The analysis results revealed that the conserved fragments were 458 bp.At the same time,the two fragments had been obtained 84.28% identification in nucleotide acid and 92.11% identification in corresponding amino acid,named as HMGRcr1 and HMGRcr2,respectively.It was deduced that they may be members of the HMGR gene family in A.lancea.Sequencing analysis showed that HMGRcr1 and HMGRcr2 had high identity with HMGR from other plants.Conclusion The cDNA encoding HMGR from A.lancea is cloned and reported for the first time.The work will provided a foundation for exploring the mechanism of terpenes biosynthesis and application to the other medicinal plants.
2.Analysis of curative effect and operation characteristics of benign breast disease mammotome minimally invasive
Gaofeng PAN ; Weiyan LIU ; Zhiyu PAN ; Chuanchao WEI
Clinical Medicine of China 2016;32(2):149-153
Objective To investigate the curative effect of mammotome minimally invasive operation in the treatment of benign breast disease and analyse its characteristics.Methods Two hundred and five cases of benign breast disease patients admitted to the hospital in time sequence were divided into the observation group (105 cases) and control group(100 cases).Observation group used mammotome minimally invasive rotary cutting operation,and the control group used conventional breast tumor resection.The surgical results of two groups of patients,tumor complete resection or not,whether the patients for surgery satisfaction were observed.Patients of two groups were compared with intraoperative and postoperative relevant indicators,and the postoperative complications.Results In the observation group,105 patients with mammotome spiral cutting knife surgery of breast masses were completely resected,the satisfaction of patients for surgery was 96.2% (101/ 105),significantly higher than that of control group(81.0% (81/100),x2 =4.187,P<0.05).The operative time,blood loss,length of incision values of observation group were significantly lower than those in the control group((17.30±6.70) min vs (57.23 ± 8.96) min,(10.43 ± 5.14) ml vs (109.16 ± 13.45) ml,(10.27 ±0.06) cm vs (1.43±0.12) cm;t=18.741,26.167,11.421;P<0.05),the postoperative recovery time and the scar length were significantly lower than the control group((4.1±2.5) d vs (8.0±3.5) d,(0.15±0.03) cm vs (1.21±0.46) cm;t =5.176,2.647;P<0.05),breast deformation cases,tumor residual proporation were 1.9%(2/105) and 0(0/105),fewer than that in the control group(12.0%(12/100),9.0%(9/100);x2=6.721,11.470;P<0.05).In control group breast deformation subcutaneous hematoma and ecchymosis,wound infection,skin damage,pain,pigment calm incidence were 2.9% (3/105),5.7% (6/105),1.9% (2/105),2.9%(3/105),8.6%(9/105),2.9%(3/105),significantly lower than those in the observation group(9.0%(9/100),12.0(12/100),7.0% (7/100),16.0%(16/100),23.0%(23/100),8.0%(8/100);x2 =2.164,3.071,2.467,6.194,6.177,2.642;P< 0.05).Conclusion Mammotome minimally invasive rotary cut scalpel compare with conventional breast tumor excision undoubtedly has a more significant curative effect and patient satisfaction and have the characteristics of operation safety,efficiency,beautiful,fewer complications,humanized.
3.Study on the correlation between thymidylate synthase expression level and postoperative chemotherapy in gastric cancer
Journal of International Oncology 2018;45(4):206-209
Objective To investigate the expression of thymidylate synthase (TS),and the correlations with the clinicopathologcal factors and the prognosis of postoperative fluorouracil chemo-therapy in gastric cancer.Methods 42 patients with gastric cancer who underwent radical gastrectomy were collected from April 2011 to April 2014 in Lu'an Hospital of Anhui Medical University,and the chemotherapy regimen was Cisplatin + Capecitabine or Cisplatin + Teggio.The levels of TS in tumor tissues of 42 patients with gastric cancer were detected by immunohistochemical method.The relationships between TS expression level,clinical features and the prognosis of patients treated with fluorouracil chemotherapy were analyzed.Results In 42 patients with gastric cancer,19 patients (45.2%) have TS high expressions,23 patients (54.8%) have TS low expressions.There were no significant correlations between the expression of TS and age,sex,clinical stage,differentiation degree,tumor location,depth of invasion,lymph node metastasis,vascular tumor thrombus and nerve bundle invasion (all P >0.05).There were significant differences between low TS expression and high TS expression in median progression-free survival and 3-year survival rate of patients [35 months vs.17 months,73.9% (17/23) vs.42.1% (8/19)],and the differences were statistically significant (x2 =4.788,P =0.029;x2 =4.369,P =0.037).In patients with stage Ⅲ gastric cancer,the median progression-free survival of patients with low TS expression was significantly prolonged compared to that with high TS expression (33 months vs.9 months),and the difference was statistically significant (x2 =4.731,P =0.030).Conclusion TS expression levels have no significant correlations with the clinicopathologcal factors,but closely relate to the prognosis of gastric cancer patients treatment with fluorouracil chemotherapy.The chemotherapy prognosis of TS high expression is worse than that of TS low expression in gastric cancer.
4.Effect of PEG stress on plantlets of Chrysanthemum morifolium induced by endophytic botrytis sp. (C1) and Chaetomium globosum (C4).
Wenling SONG ; Xiaozhen LIU ; Xinzhi CAI ; Di SUN ; Chuanchao DAI
China Journal of Chinese Materia Medica 2011;36(3):302-306
The effect of the endophytic fungi Botrytis sp. (C1) or Chaetomium globosum (C4) on the drought resistance of Chrysanthemum morifolium was studied. Ch. morifolium plantlets were inoculated with C1, C4 and cultured in the pots for 60 days, then the plantlets were stressed by 0%, 10%, 20%, 30%, 40% PEG6000 respectively in order to simulate different drought conditions. Biomass, the activities of SOD, POD, PAL, the contents of MDA and soluble protein of each group were determined. The results showed that endophytic fungi groups grew better than the control (without inoculation endophytic fungi). With the increasing of the concentration of PEG6000, the biomass of Ch. morifolium of each groups decreased, while the biomass of fungi groups was significantly higher than that of control, moreover C4 group higher than C1 group. With the concentration of PEG increasing, the content of MDA of each group increased too, while POD activity and soluble protein content of all treatments increased at first and then decreased. SOD activity and PAL activity of the control were increased with the increase of PEG concentration, but SOD activity of the two fungi groups were stable. After been stressed by different concentrations of PEG, MDA content of two fungi groups were always lower than the control, while SOD activity, POD activity, PAL activity and soluble protein content were higher. In conclusion, endophytic fungi can increase the drought resistance of Ch. morifolium.
Biomass
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Botrytis
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drug effects
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growth & development
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isolation & purification
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Chaetomium
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drug effects
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growth & development
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isolation & purification
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Chrysanthemum
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drug effects
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metabolism
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microbiology
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Droughts
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Peroxidases
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metabolism
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Polyethylene Glycols
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pharmacology
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Stress, Physiological
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drug effects
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Superoxide Dismutase
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metabolism
5.Single-cell RNA sequencing reveals the process of CA19-9 production and dynamics of the immune microenvironment between CA19-9 (+) and CA19-9 (-) PDAC
Deyu ZHANG ; Fang CUI ; Kailian ZHENG ; Wanshun LI ; Yue LIU ; Chang WU ; Lisi PENG ; Zhenghui YANG ; Qianqian CHEN ; Chuanchao XIA ; Shiyu LI ; Zhendong JIN ; Xiaojiang XU ; Gang JIN ; Zhaoshen LI ; Haojie HUANG
Chinese Medical Journal 2024;137(20):2415-2428
Background::Pancreatic ductal adenocarcinoma (PDAC) is one of the main types of malignant tumor of the digestive system, and patient prognosis is affected by difficulties in early diagnosis, poor treatment response, and a high postoperative recurrence rate. Carbohydrate antigen 19-9 (CA19-9) has been widely used as a biomarker for the diagnosis and postoperative follow-up of PDAC patients. Nevertheless, the production mechanism and potential role of CA19-9 in PDAC progression have not yet been elucidated.Methods::We performed single-cell RNA sequencing on six samples pathologically diagnosed as PDAC (three CA19-9-positive and three CA19-9-negative PDAC samples) and two paracarcinoma samples. We also downloaded and integrated PDAC samples (each from three CA19-9-positive and CA19-9-negative patients) from an online database. The dynamics of the proportion and potential function of each cell type were verified through immunofluorescence. Moreover, we built an in vitro coculture cellular model to confirm the potential function of CA19-9. Results::Three subtypes of cancer cells with a high ability to produce CA19-9 were identified by the markers TOP2A, AQP5, and MUC5AC. CA19-9 production bypass was discovered on antigen-presenting cancer-associated fibroblasts (apCAFs). Importantly, the proportion of immature ficolin-1 positive (FCN1+) macrophages was high in the CA19-9-negative group, and the proportion of mature M2-like macrophages was high in the CA19-9-positive group. High proportions of these two macrophage subtypes were associated with an unfavourable clinical prognosis. Further experiments indicated that CA19-9 could facilitate the transformation of M0 macrophages into M2 macrophages in the tumor microenvironment. Conclusions::Our study described CA19-9 production at single-cell resolution and the dynamics of the immune atlas in CA19-9-positive and CA19-9-negative PDAC. CA19-9 could promote M2 polarization of macrophage in the pancreatic tumor microenvironment.
6.Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis
Hu JIHONG ; Zeng TAO ; Xia QIONGMEI ; Huang LIYU ; Zhang YESHENG ; Zhang CHUANCHAO ; Zeng YAN ; Liu HUI ; Zhang SHILAI ; Huang GUANGFU ; Wan WENTING ; Ding YI ; Hu FENGYI ; Yang CONGDANG ; Chen LUONAN ; Wang WEN
Genomics, Proteomics & Bioinformatics 2020;18(3):256-270
Significantly increasing crop yield is a major and worldwide challenge for food supply and security. It is well-known that rice cultivated at Taoyuan in Yunnan of China can produce the highest yield worldwide. Yet, the gene regulatory mechanism underpinning this ultrahigh yield has been a mystery. Here, we systematically collected the transcriptome data for seven key tissues at different developmental stages using rice cultivated both at Taoyuan as the case group and at another regular rice planting place Jinghong as the control group. We identified the top 24 candi-date high-yield genes with their network modules from these well-designed datasets by developing a novel computational systems biology method, i.e., dynamic cross-tissue (DCT) network analysis. We used one of the candidate genes, OsSPL4, whose function was previously unknown, for gene editing experimental validation of the high yield, and confirmed that OsSPL4 significantly affects panicle branching and increases the rice yield. This study, which included extensive field phenotyping, cross-tissue systems biology analyses, and functional validation, uncovered the key genes and gene regulatory networks underpinning the ultrahigh yield of rice. The DCT method could be applied to other plant or animal systems if different phenotypes under various environments with the common genome sequences of the examined sample. DCT can be downloaded from https://github.com/zt-pub/DCT.
7.Construction and performance analysis of a microbial electrochemical sensor for monitoring heavy metals in water environment.
Xiaoxiao LIU ; Fei YE ; Chuanchao WEI ; Mingjie ZHAO ; Yongtian LI
Chinese Journal of Biotechnology 2022;38(5):1903-1914
A microbial fuel cell (MFC)-based microbial electrochemical sensor was developed for real-time on-line monitoring of heavy metals in water environment. The microbial electrochemical sensor was constructed with staggered flow distribution method to optimize the parameters such as external resistance value and external circulation rate. The inhibition of concentration of simulated heavy metal wastewater on voltage under optimal parameters was analyzed. The results showed that the best performance of MFC electrochemical sensor was achieved when the external resistance value was 130 Ω and the external circulation rate was 1.0 mL/min. In this case, the microbial electrochemical sensors were responsive to 1-10 mg/L Cu2+, 0.25-1.25 mg/L Cd2+, 0.25-1.25 mg/L Cr6+ and 0.25-1.00 mg/L Hg2+ within 60 minutes. The maximum rejection rates of the output voltage were 92.95%, 73.11%, 82.76% and 75.80%, respectively, and the linear correlation coefficients were all greater than 0.95. In addition, the microbial electrochemical sensor showed a good biological reproducibility. The good performance for detecting heavy metals by the newly developed microbial electrochemical sensor may facilitate the real-time on-line monitoring of heavy metals in water environment.
Bioelectric Energy Sources
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Electrodes
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Metals, Heavy/analysis*
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Reproducibility of Results
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Waste Water
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Water