1.An optimal electroporation system for Dunaliella salina.
Pengju LÜ ; Hongxia YAN ; Jie LI ; Hongtao LIU ; Xuejing LU ; Lexun XUE
Chinese Journal of Biotechnology 2009;25(4):520-525
To optimize the electroporation system in Dunaliella salina (D. salina), we studied the effects of growth phase of cells, electric parameters, electroporation buffer and concentration of plasmid on transformation efficiency. The results showed that a transformation efficiency of 1.81 per thousand was achieved in D. salina cells at mid-log growth phase electroporated with plasmid (DCA-bar) 10 microg/mL, voltage 0.8 kV and capacitance 25 microF. However, when glycerol was added to electroporation buffer at a final concentration of 0.4 mol/L, the transformation efficiency was increased up to 2.03 per thousand. Additionally, transformation was done with plasmids DCA-bar, NR-bar, pUomega-bar respectively, under above optimum conditions, and similar transformation efficiencies were obtained. The findings indicate that an efficient and stable system of electroporation in D. salina has been developed, providing a powerful tool for the transgenic research of D. salina.
Chlorophyta
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cytology
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genetics
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Culture Media
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Electroporation
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Organisms, Genetically Modified
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genetics
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Transformation, Genetic
;
genetics
2.Transcriptome analysis of signal transduction pathway involved in light inducing astaxanthin accumulation in Haematococcus pluvialis.
Hongli CUI ; Wenxin XU ; Yulin CUI ; Chunli JI ; Chunhui ZHANG ; Song QIN ; Runzhi LI
Chinese Journal of Biotechnology 2021;37(4):1260-1276
The unicellular green alga Haematococcus pluvialis is the best source of natural astaxanthin (AST) in the world due to its high content under stress conditions. Although high light (HL) can effectively induce AST biosynthesis, the specific mechanisms of light signal perception and transduction are unclear. In the current study, we used transcriptomic data of normal (N), high white light (W), and high blue light (B) to study the mechanisms of light inducing AST accumulation from the point of photoreceptors. The original data of 4.0 G, 3.8 G, and 3.6 G for N, W, and B were obtained, respectively, by the Illumina Hi-seq 2000 sequencing technology. Totally, 51 954 unigenes (at least 200 bp in length) were generated, of which, 20 537 unigenes were annotated into at least one database (NR, NT, KO, SwissProt, Pfam, GO, or KOG). There were 1 255 DEGs in the W vs N, 1 494 DEGs in the B vs N, and 1 008 DEGs in the both W vs N and B vs N. KEGG enrichment analysis revealed that photosynthesis, oxidative phosphorylation, carotenoid biosynthesis, fatty acids biosynthesis, DNA replication, nitrogen metabolism, and carbon metabolism were the significantly enriched pathways. Moreover, a large number of genes encoding photoreceptors and predicted interacting proteins were predicted in Haematococcus transcriptome data. These genes showed significant differences at transcriptional expression levels. In addition, 15 related DEGs were selected and tested by qRT-PCR and the results were significantly correlated with the transcriptome data. The above results indicate that the signal transduction pathway of "light signal - photoreceptors - interaction proteins - (interaction proteins - transcription factor/transcriptional regulator) - gene expression - AST accumulation" might play important roles in the regulation process, and provide reference for further understanding the transcriptional regulation mechanisms of AST accumulation under HL stress.
Chlorophyta/genetics*
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Gene Expression Profiling
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Signal Transduction/genetics*
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Transcriptome/genetics*
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Xanthophylls
3.Transformation of Dunaliella salina by using glass beads--a novel transformation method.
Shu-Ying FENG ; Yan-Long JIA ; Hong-Tao LIU ; Jie LI ; Le-Xun XUE
Chinese Journal of Biotechnology 2007;23(2):358-362
A novel transformation method was firstly established using glass beads in Dunaliella salina (D. salina). The results showed that the GUS gene, a reporter gene, was successfully expressed in D. salina. Cells of D. salina presented blue color under the microscope after stained. In addition, different factors which influenced transformation were optimized including the transformation consecutive time, rotate speed, concentration of the plasmid and PEG 6000. The experiment indicated that this fit together can obtain the best results for D. salina transformation: adding 150 microL PEG and 90 microL plasmid DNA to 800 microL culture of D. salina (10(6) cells/mL) containing 300 mg glass beads, swirling 12 seconds under the rotate speed 2400r/min. This newly method can be used as a potential tool in the research of D. salina gene engineering with the advantage of more simpleness, convenience, quickness and less expense.
Chlorophyta
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genetics
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DNA
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chemistry
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genetics
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Genetic Engineering
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methods
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Glass
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Glucuronidase
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genetics
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metabolism
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Histocytochemistry
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Microspheres
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Plasmids
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genetics
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Polyethylene Glycols
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chemistry
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Time Factors
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Transformation, Genetic
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genetics
4.High throughput screening atrazine chlorohydrolase mutants with enhanced activity through Haematococcus pluvialis expression system.
Huizhuan WANG ; Xiwen CHEN ; Xiaohua HAO ; Defu CHEN
Chinese Journal of Biotechnology 2011;27(4):620-628
Developing a high-throughput screening method is of great importance for directed evolution of atrazine chlorohydrolase. A mutagenesis library of atzA from Pseudomonas sp. ADP and Arthrobacter sp. AD1 was constructed using error-prone PCR and DNA shuffling. Candidate mutants were screened through Haematococcus pluvialis expression system, using atrazine as selection pressure. Sequence analysis showed that mutations in the obtained 12 mutants with enhanced activity were all point-substitutions and scattered throughout the gene. Enzymatic activity analysis showed that the mutants all had higher activities than that of the wild type. The activities were 1.8-3.6 fold of the wild-type enzyme when cultured in BBM medium with 1 mg/L atrazine, whereas 1.8-2.6 fold with 2 mg/L atrazine. These results indicated that Haematococcus pluvialis expression system is an ideal high throughput screening system for directed evolution of atrazine chlorohydrolase.
Amidohydrolases
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genetics
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Atrazine
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metabolism
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Bacterial Proteins
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genetics
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Biodegradation, Environmental
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Chlorophyta
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genetics
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metabolism
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Herbicides
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metabolism
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High-Throughput Screening Assays
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Hydrolases
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biosynthesis
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genetics
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Mutagenesis, Insertional
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Pseudomonas
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enzymology
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genetics
5.Construction of Dunaliella salina heterotrophic expression vectors and identification of heterotrophically transformed algal strains.
Tao CHEN ; Hongtao LIU ; Pengju LÜ ; Lexun XUE
Chinese Journal of Biotechnology 2009;25(3):392-398
We constructed inducible and constitutive heterotrophic expression vectors of Dunaliella salina (D. salina) and identified heterotrophic transformants. A gene encoding a glucose transporter (Glut1) was cloned from human placenta tissues by RT-PCR and sequenced. Inducible heterotrophic expression vector pMDDGN-Bar of D. salina, which included a duplicated carbonic anhydrase (DCA) promotor and a Bar selectable marker that could drive expression of the Glut1 gene in D. salina, was constructed by molecular biology methods. In addition, we constructed another vector G5Glut1-Bar that contained a constitutive ubiquitin promotor, Glut1 and Bar box. The two expression vectors were introduced into D. salina by electroporation method, and then screened the transformants with phosphinothricin (PPT). Total RNA of the transformants extracted was used to analyze the integration of the target gene (Glut1) by RT-PCR. The cloned Glut1 sequence was 1479 bp and encoded 493 amino acids. The results of all enzymes digesting showed that two expression vectors were successfully constructed. After screening by PPT for several weeks, the transfomants grew well whereas wild-type cells died completely. The result of RT-PCR indicated that two transformants both had an about 250 bp specific band and the sequence homology was 100% compared with the human Glut1 sequence by Blast analysis. Taken altogether, inducible and constitutive heterotrophic expression vectors of D. salina was constructed successfully and the Glut1 gene was integrated into the genome of D. salina. Expression vectors above-mentioned may be used for the expression of the foreign Glut1 gene in D. salina.
Base Sequence
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Chlorophyta
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genetics
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metabolism
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Cloning, Molecular
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Electroporation
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Genetic Vectors
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genetics
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Glucose Transporter Type 1
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biosynthesis
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genetics
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Industrial Microbiology
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Molecular Sequence Data
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Transformation, Genetic
6.Cloning and analysis of psaB cDNA of Dunaliella salina.
Hong-Tao LIU ; Wei-Dong ZANG ; Zhao-Ming LU ; Ning WANG ; Gui-Qin HOU ; Shen-Ke LI ; Le-Xun XUE
Chinese Journal of Biotechnology 2005;21(4):642-645
One pair of degenerate primer was designed according to conserved motifs of the psaB (A2 subunit of photosystem I) of Chlamydomonas reinhardtii, Chlamydomonas moewusii, Chlorella vulgaris and Mesostigma viride, and a total RNA of Dunaliella salina (D. salina) was extracted with TRIzol reagent. A cDNA fragment, about 1.8kb in length, from green algal D. salina was obtained through RT-PCR method. The resulting PCR product was cloned into T-vector and screened to determine its sequence. Homologous analysis of the deduced amino acid sequence was performed by BLAST and subsequeqtly compared with GenBank data. The obtained cDNA sequence was 1815 bp long, which encodes 605 amino acids (GenBank accession number: AY820754). The sequence shared high homologue with the following psaB: Chlamydomonas reinhardtii 92%, Chlamydomonas moewusii 91%, Chlorella vulgaris 86%, Mesostigma viride 85%, Physcomitrella patens subsp. Patens 85% and Nephroselmis olivacea 84%. It can be concluded that the cloned sequence is psaB cDNA fragment from D. salina.
Algal Proteins
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genetics
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Amino Acid Sequence
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Animals
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Chlamydomonas reinhardtii
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genetics
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Chlorophyta
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genetics
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metabolism
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Cloning, Molecular
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DNA, Complementary
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genetics
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Molecular Sequence Data
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Photosystem I Protein Complex
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genetics
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Sequence Analysis, Protein
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Sequence Homology, Amino Acid
7.Characterization of the functional domain of STT3a of oligosaccharyltransferase from Dunaliella salina.
Cui WANG ; Jie LI ; Liping LIU ; Lei ZENG ; Lexun XUE
Chinese Journal of Biotechnology 2010;26(6):760-766
To investigate the function of STT3a gene in salt adaptation and flagellar regeneration of Dunaliella salina (D. salina), a pair of degenerate primers was designed according to conserved homologous amino acid sequences of VCVFTA and DVDYVL of STT3a from Chlamydomonas, Arabidopsis thaliana and other organisms. A cDNA sequence of 1 650 bp encoding a whole functional domain of STT3a was amplified from D. salina by RT-PCR and 3' Rapid Amplification of cDNA Ends (RACE), which shared homology with Chlamydomonas (48%), Arabidopsis thaliana (50%), Homo sapiens (46%), etc. Real-time fluorescence quantitative PCR (real-time Q-PCR) demonstrated that the STT3a mRNAs from D. salina were induced by increased concentration of NaCl, and increased to 11-fold higher by 3.5 mol/L NaCl than that by 1.5 mol/L NaCl (P < 0.01). Also, STT3a mRNA of D. salina maintained at a higher level in the process of flagellar regeneration with than without experiencing deflagellar treatment. In conclusion, the findings of this study demonstrate that the high expression of the STT3a gene enhances the capability of salt adaptation and flagellar regeneration in D. salina.
Adaptation, Physiological
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physiology
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Arabidopsis
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enzymology
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Chlamydomonas
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enzymology
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Chlorophyta
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enzymology
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genetics
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Cloning, Molecular
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Flagella
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metabolism
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Hexosyltransferases
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chemistry
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genetics
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metabolism
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Membrane Proteins
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chemistry
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genetics
;
metabolism
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RNA, Messenger
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genetics
;
metabolism
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Saccharomyces cerevisiae Proteins
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genetics
;
metabolism
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Sodium Chloride
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pharmacology
8.Structure of the catalytic domain of a state transition kinase homolog from Micromonas algae.
Jiangtao GUO ; Xuepeng WEI ; Mei LI ; Xiaowei PAN ; Wenrui CHANG ; Zhenfeng LIU
Protein & Cell 2013;4(8):607-619
Under natural environments, plants and algae have evolved various photosynthetic acclimation mechanisms in response to the constantly changing light conditions. The state transition and long-term response processes in photosynthetic acclimation involve remodeling and composition alteration of thylakoid membrane. A chloroplast protein kinase named Stt7/STN7 has been found to have pivotal roles in both state transition and long-term response. Here we report the crystal structures of the kinase domain of a putative Stt7/STN7 homolog from Micromonas sp. RCC299 (MsStt7d) in the apo form and in complex with various nucleotide substrates. MsStt7d adopts a canonical protein kinase fold and contains all the essential residues at the active site. A novel hairpin motif, found to be a conserved feature of the Stt7/STN7 family and indispensable for the kinase stability, interacts with the activation loop and fixes it in an active conformation. We have also demonstrated that MsStt7d is a dualspecifi city kinase that phosphorylates both Thr and Tyr residues. Moreover, preliminary in vitro data suggest that it might be capable of phosphorylating a consensus N-terminal pentapeptide of light-harvesting proteins Micromonas Lhcp4 and Arabidopsis Lhcb1 directly. The potential peptide/protein substrate binding site is predicted based on the location of a pseudo-substrate contributed by the adjacent molecule within the crystallographic dimer. The structural and biochemical data presented here provide a framework for an improved understanding on the role of Stt7/STN7 in photosynthetic acclimation.
Amino Acid Sequence
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Amino Acid Substitution
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Arabidopsis
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metabolism
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Arabidopsis Proteins
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chemistry
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genetics
;
metabolism
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Binding Sites
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Catalytic Domain
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Chlorophyta
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enzymology
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Crystallography, X-Ray
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Cyclin-Dependent Kinase 2
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chemistry
;
metabolism
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Molecular Sequence Data
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Phosphorylation
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Protein Structure, Secondary
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Protein-Serine-Threonine Kinases
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chemistry
;
genetics
;
metabolism
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Sequence Alignment
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Substrate Specificity