1.Sample Preparation and Imaging of Single Adenovirus Particle Using Atomic Force Microscopy in Liquid.
Yan LIANG ; Li CHEN ; Mariska G M van ROSMALEN ; Gijs J L WUITE ; Wouter H ROOS
Chinese Journal of Virology 2015;31(6):601-606
Atomic force microscopy (AFM), as a sophisticated imaging tool with nanoscale resolution, is widely used in virus research and the application of functional viral particles. To investigate single viruses by AFM in a physiologically relevant environment (liquid), an appropriate surface treatment to properly adhere the viruses to the substrate is essential. Here we discuss hydrophobic treated glass coverslips as a suitable substrate for the adhesion of single adenovirus particle (Adenovirus type 5 F35, Ad5F35) when studied with AFM in liquid. From the high resolution AFM images, the orientation of the adhered virus particles can be distinguished. Furthermore, the particles exhibit the expected height of -90 nm. This illustrates that the viruses adhere to the substrate firmly without large deformations. Hence, the described method works well on (fragile) viruses. The described experimental approach can be widely used for AFM studies in liquid of virus structure and mechanics as well as for investigating the interaction of viruses with cellular receptors.
Adenoviridae
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chemistry
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Imaging, Three-Dimensional
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Microscopy, Atomic Force
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methods
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Virion
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chemistry
2.International Classification of Functioning, Disability, and Health: development process and content validity
A. Cieza ; G. Stucki ; Jing ZHANG ; Di CHEN ; Zhuoying QIU ; Jianjun LI
Chinese Journal of Rehabilitation Theory and Practice 2011;17(1):11-16
世界卫生组织的《国际功能、残疾与健康分类》(ICF)为我们理解健康、功能和残疾提供了一个新的基础。然而在其应用过程中可能会遇到不同的挑战。本文旨在解决其中的两个挑战:ICF内容效度以及ICF与其他健康相关概念如全健康、生活质量(QoL)和健康相关生活质量(HRQoL)的关系。正在进行的一系列效度研究证实,ICF是一个完备的分类:它既涵盖构成人类功能和残疾体验的健康及其相关领域,又涵盖大多数影响功能和残疾体验的环境因素。而且ICF也有助于人们把健康理解为一个序列:以身体为中心的观念(身体的健康体验)、综合的观念(“全健康体验”),并最终发展成为整体观念(“人类体验”),最后这种整体观念把健康看作人类体验的一部分。ICF将健康从一个狭隘的观点转变为广义的功能观点,使得健康作为人类体验的一部分可操作化。ICF及其类目也可以作为客观评价全健康的起点:HRQoL既然被定义为个体对健康和全健康的健康相关领域的一种知觉,基于ICF功能概念的类目也就可作为HRQoL评定的基础。
3.Esophageal carcinoma resection and gastroesophageal reconstruction unde r left heart bypass
Shi-Zhi FAN ; Jian-Ming CHEN ; Zhi-Ping LI ; Hui-Jun NIU ; Xiang-Li LIAO ; Jun LEI
Journal of Third Military Medical University 2001;23(5):520-521
Objective To estimate the value of applying left heart bypass technique in esophageal carcinoma resection and gastroesophageal reconstruction. Methods The operation was performed under lef t he art bypass. Results Applying left heart bypass during esophagea l carcinoma resection and gastroesophageal reconstruction increased the probabil ity of the resection. The patient lived better and without operative complicatio n. Conclusion In case of esophageal carcinoma with invasion of descending aorta by carcinoma, left heart bypass may increase the probability of the resection and enhance the safety of surgical treatment.
4.Compression Fractures in the Setting of Diffuse Idiopathic Skeletal Hyperostosis.
Amila M G SILVA ; Shron Si Heng TAN ; Milindu Chanaka MAKARANDA ; John Li Tat CHEN
Asian Spine Journal 2015;9(4):629-635
Compression fractures are the most common vertebral fractures. They involve the anterior column of the spine, and are considered stable fractures due to the presence of intact posterior ligaments that aid in resisting further collapse and deformity. They are thus often managed conservatively. We describe a series of 3 cases that were initially diagnosed as compression fractures and managed conservatively. With the abundance of compression fractures and increase in preference for conservative management of compression fractures, it is of utmost importance to recognize the possibility of other spinal co-pathologies, especially that of hyperostosis of the spine, both by clinical judgment as well as radiological analysis before embarking on conservative management, should there be under-treatment and development of complications that could have otherwise been avoided, as in the cases presented in this series.
Congenital Abnormalities
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Fractures, Compression*
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Hyperostosis
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Hyperostosis, Diffuse Idiopathic Skeletal*
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Judgment
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Ligaments
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Radiography
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Spine
5.The Surgical Treatment of Three Young Chronic Subdural Hematoma Patients with Different Causes.
Kun HOU ; Chen G LI ; Yang ZHANG ; Bo X ZHU
Journal of Korean Neurosurgical Society 2014;55(4):218-221
Chronic subdural hematoma (CSDH), which rarely happens in the young, is thought to be a disease of the elderly. Whereas unspecific symptoms and insidious onset in juveniles and young adults, as a result of its relative low morbidity, CSDH is usually neglected even undertreated in the young. Through the three cases and review of the current literature on this subject, we tried to illustrate the clinical and etiopathological characteristics of this entity and find out the most appropriate treatment strategy. We report three young CSDH patients with different but similar symptoms. The present histories, tests and examinations revealed different predisposing factors accounting for the genesis of CSDH. Their preoperative symptoms were all resolved with burr hole and drainage operation. Juveniles and young adults suffering from CSDH differ from that of their elderly counterparts in their clinical and etiopathological characteristics. Although trauma is the most important risk factor in young and old CSDH patients, some other predisposing factors may exist. Burr hole and drainage surgery could resolve the problem most of the time. But further tests and examinations even specific management should be made in some cases.
Aged
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Causality
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Drainage
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Hematoma, Subdural, Chronic*
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Humans
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Intracranial Hypotension
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Risk Factors
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Young Adult
6.Effects of remifentanil on intracellular Ca(2+) and its transients induced by electrical stimulation and caffeine in rat ventricular myocytes.
Ye ZHANG ; Michael G IRWIN ; Rui LI ; Zhi-Wu CHEN ; Tak-Ming WONG
Chinese Medical Journal 2009;122(12):1439-1443
BACKGROUNDPreconditioning with remifentanil confers cardioprotection. Since Ca(2+) overload is a precipitating factor of injury, we determined the effects of remefentanil on intracellular Ca(2+) ([Ca(2+)](i)) and its transients induced by electrical stimulation and caffeine, which reflects Ca(2+) handling by Ca(2+) handling proteins, in rat ventricular myocytes.
METHODSFreshly isolated adult male Sprague-Dawley rat myocytes were loaded with Fura-2/AM and [Ca](i) was determined by spectrofluorometry. Remifentanil at 0.1 - 1000 microg/L was administered. Ten minutes after administration, either 0.2 Hz electrical stimulation was applied or 10 mmol/L caffeine was added. The [Ca(2+)](i), and the amplitude, time resting and 50% decay (t(50)) of both transients induced by electrical stimulation (E [Ca(2+)](i)) and caffeine (C [Ca(2+)](i)) were determined.
RESULTSRemifentanil (0.1 - 1000.0 microg/L) decreased the [Ca(2+)](i) in a dose-dependent manner. It also decreased the amplitude of both transients dose-dependently. Furthermore, it increased the time to peak and t(50) of both transients dose-dependently.
CONCLUSIONRemifentanil reduced the [Ca(2+)](i) and suppressed the transients induced by electrical stimulation and caffeine in rat ventricular myocytes.
Animals ; Caffeine ; pharmacology ; Calcium ; metabolism ; Calcium Signaling ; drug effects ; Cells, Cultured ; Electric Stimulation ; Male ; Myocytes, Cardiac ; drug effects ; metabolism ; Piperidines ; pharmacology ; Rats ; Rats, Sprague-Dawley
7.Multiple organ dysfunction scoring system: comparison and evaluation of correlation and accuracy of the three scoring systems in predicting the outcome of multiple organ dysfunction syndrome on highland
SF, ZHANG ; DH, ZHANG ; W, GAO ; HP, LIU ; XH, LUO ; G, DA ; JY, WU ; SX, LIN ; NB, LI ; TD, CHEN ; TY, WU
Chinese Critical Care Medicine 2005;17(6):346-352
OBJECTIVE: To study the characteristics of the diagnostic parameters of acute respiratory distress syndrome/multiple organ dysfunction syndrome on plateau (H-ARDS/MODS) and compare the accuracy of the three MODS scoring criteria in predicting the outcome of syndrome. METHODS: Five hundred and forty cases fulfilling the criteria of MODS were divided into four groups according to the altitude of their inhabitation area: control group (on plain, CG, n=113, altitude: <430 m), moderate high altitude group 1 (H1G, n=314, altitude: 1,517 m), moderate high altitude group 2 (H2G, n=78, altitude: 2,261 m to 2,400 m) and high altitude group (HG, n=35, altitude: 2 808 m to 3 400 m). According to the diagnostic criteria of Lushan conference and Marshall (1995) commonly used on plain, and Lanzhou criteria drafted by the authors, three data analyzing models were set up to draw the receiver operating characteristic (ROC) curves, the Yordon Index and the optimum cutoff points of the parameters were calculated and the accuracy of the three respective diagnostic criteria was evaluated in predicting the outcome of ARDS/MODS. Multiple factors affecting the outcome of MODS were analyzed using the method of stepwise forward regress model. RESULTS: Following the increase in altitude, Lanzhou criteria was clearly superior to the other two criteria in the area of ROC, the sensitivity, the specificity, and also for the optimum cutoff points of MODS. Multi-variable regression analysis showed that the impacting factor of Lanzhou criteria was the highest (P<0.05). CONCLUSION: (1)Some parameters of the current diagnostic criteria of ARDS/MODS are not suitable in moderately high or high altitude areas. It is necessary to set up the diagnostic criteria of H-ARDS/MODS. (2)Some clinical characteristics might change in areas 1,500 m altitude or higher. The pathophysiological mechanism might be attributable to peculiar biologic reactions due to hypoxia stress reaction, and it is worth further study.
Altitude
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Multiple Organ Failure/*diagnosis
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Prognosis
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ROC Curve
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Regression Analysis
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Respiratory Distress Syndrome, Adult/*diagnosis
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Severity of Illness Index
8.CIRCexplorer3:A CLEAR Pipeline for Direct Comparison of Circular and Linear RNA Expression
Ma XU-KAI ; Wang MENG-RAN ; Liu CHU-XIAO ; Dong RUI ; Carmichael G. GORDON ; Chen LING-LING ; Yang LI
Genomics, Proteomics & Bioinformatics 2019;17(5):511-521
Sequences of circular RNAs (circRNAs) produced from back-splicing of exon(s) com-pletely overlap with those from cognate linear RNAs transcribed from the same gene loci with the exception of their back-splicing junction (BSJ) sites. Therefore, examination of global circRNA expression from RNA-seq datasets generally relies on the detection of RNA-seq fragments span-ning BSJ sites, which is different from the quantification of linear RNA expression by normalized RNA-seq fragments mapped to whole gene bodies. Thus, direct comparison of circular and linear RNA expression from the same gene loci in a genome-wide manner has remained challenging. Here, we update the previously-reported CIRCexplorer pipeline to version 3 for circular and linear RNA expression analysis from ribosomal-RNA depleted RNA-seq (CIRCexplorer3-CLEAR). A newquantitation parameter, fragments per billion mapped bases (FPB), is applied to evaluate circular and linear RNA expression individually by fragments mapped to circRNA-specific BSJ sites or to linear RNA-specific splicing junction (SJ) sites. Comparison of circular and linear RNA expression levels is directly achieved by dividing FPBcirc by FPBlinear to generate a CIRCscore, which indicates the relative circRNA expression level using linear RNA expression level as the background. Highly-expressed circRNAs with low cognate linear RNA expression background can be readily identified by CIRCexplorer3-CLEAR for further investigation. CIRCexplorer3-CLEAR is publically avail-able at https://github.com/YangLab/CLEAR.
9.Long-term effects of heme oxygenase 1 overexpression on post-infarction heart function in diabetic rats.
Jian LI ; Tian-Meng CHEN ; Jianla CAO ; De-You CHEN ; Hao WANG ; Hai-Yan SHI ; Meng GAO ; Fan LI ; Nader G ABRAHAM
Chinese Journal of Applied Physiology 2014;30(5):421-426
OBJECTIVETo clarify the impact of increased heme oxygenase-1 (HO-1) expression on cardiac function of diabetic rats with myocardial infarction and its mechanism.
METHODSSixty adult male Wistar rats were randomly divided into five groups (n = 12): sham operation group (sham), diabetes + sham operation group (DM + sham), diabetes + MI group (DM + MI) , diabetes + myocardial infarction + cobalt original porphyrin (CoPP) group (DM + MI + CoPP), diabetes + myocardial infarction + CoPP+ tin porphyrin (SnMP) group (DM + MI + CoPP + SnMP). CoPP 4.5 mg/kg or SnMP 15 mg/kg were administered at the day next to MI operation, for six weeks, once a week. At the 28th week post operation, the echocardiography, left heart via the carotid artery indoor intubation were used to observe the long-term influence of HO-1 inducer (cobalt protoporphyrin, CoPP) and activity of HO inhibitor (tin porphyrin, SnMP) on the indices of left ventricular remodeling and cardiac function after the intervention. Blood glucose (GLU), total cholesterol (TC), C-reactive protein (CRP), serum creatinine (Cr), aminotransferase (ALT) and other indicators were measured. ELISA was used to test interleukin-6 (IL-6), tumor necrosis factor (TNF), nitric oxide (NO), prostacyclin (PGI2), adiponectin, and ultra sensitive CRP (HsCRP) level.
RESULTSHO-1 inducer, CoPP, could ameliorate ± dp/dtmax, left ventricular ejection fraction and left ventricular shortening fraction in diabetic myocardial infarction rats. It could also decrease left ventricular end-diastolic diameter. The serum bilirubin, NO and PGI2 levels, myocardial phosphorylated endothelial nitric oxide synthasee(peNOS), phosphorylated activated protein kinase (pAkt), phosphorylated adenosine monophosphate-activated protein kinase (pAMPK) expression were also significantly elevated, and the serum hs-CRP and TNF levels were significantly inhibited. Compared to inducer group, cardiac function were worse in the inhibitor group.
CONCLUSIONUpregulated HO-1 level can improve the endothelial function, inhibite of the inflammatory response and enhance the antioxidant substances in serum bilirubin via peNOS-pAMPK pathway, which effectively inhibit ventricular remodeling and improve the long-term cardiac function after infarction in diabetic rats.
Animals ; Antioxidants ; metabolism ; Bilirubin ; blood ; Diabetes Mellitus, Experimental ; physiopathology ; Heme Oxygenase (Decyclizing) ; metabolism ; Male ; Myocardial Infarction ; enzymology ; Myocardium ; enzymology ; Rats ; Rats, Wistar ; Signal Transduction ; Up-Regulation ; Ventricular Function, Left ; Ventricular Remodeling ; drug effects
10.ROS is not involved in induction of cell death by Ent-11 alpha-hydroxy-15-oxo-kaur-16-en-19-oic-acid in HepG2 cells.
Li LI ; Kefeng WU ; Yi LIU ; Yingnian LV ; Xianling GONG ; George G CHEN ; Paul LAI ; Nianci LIANG
China Journal of Chinese Materia Medica 2010;35(10):1287-1291
OBJECTIVETo identify the role of reactive oxygen species (ROS) formation on cell death induced by Ent-11alpha-hydroxy-15-oxo-kaur-16-en-19-oic-acid (5F) in HepG2 cells.
METHODMTT assay was used to determine the effect of 5F on proliferation of HepG2 cells, and apoptotic morphological changes were assessed using Hoechst/PI assay. To evaluate intracellular ROS levels, a GENMED kit was used. HepG2 cells were treated with 5F for 24 h or with 1 mmol x L(-1) GSH for 1 h prior to treatment with 5F for 24 h, then cytoplasmic mono- and oligonucleosomes were assessed with Cell Death Detection ELISA kit.
RESULTThe cytotoxicity of 5F on HepG2 cells was elevated with increasing 5F concentrations, as evidenced by the cell viability assay, and the apoptotic changes such as chromatin condensation were confirmed by Hoechst/PI staining. The decrease in ROS generation was observed in HepG2 cells following treatment with 5F. Cytoplasmic mono- and oligonucleosomes induced by 5F were not changed by decreasing basal level of ROS-mediated signaling with GSH. Further more, induction of ROS production by cisplatinum (CDDP) was canceled by treatment with 5F and 5F revealed a additive effect to cell killing by CDDP.
CONCLUSION5F can not only induce apoptosis through non-ROS-depandent pathway, and can abate oxidant stress.
Apoptosis ; drug effects ; Cell Death ; drug effects ; Diterpenes ; toxicity ; Drugs, Chinese Herbal ; toxicity ; Hep G2 Cells ; Humans ; Pteris ; chemistry ; Reactive Oxygen Species ; metabolism