1.Study on prediction of compound-target-disease network of chuanxiong rhizoma based on random forest algorithm.
Jie YUAN ; Xiao-Jie LI ; Chao CHEN ; Xiang-Gang SONG ; Shu-Mei WANG
China Journal of Chinese Materia Medica 2014;39(12):2336-2340
To collect small molecule drugs and their drug target data such as enzymes, ion channels, G-protein-coupled receptors and nuclear receptors from KEGG database as the training sets, in order to establish drug-target interaction models based on the random forest algorithm. The accuracies of the models were evaluated by the 10-fold cross-validation test, showing that the predicted success rates of the four drug target models were 71.34%, 67.08%, 73.17% and 67.83%, respectively. The models were adopted to predict the targets of 26 chemical components and establish the compound-target-disease network. The results were well verified by literatures. The models established in this paper are highly accurate, and can be used to discover potential targets in other traditional Chinese medicine ingredients.
Algorithms
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Drugs, Chinese Herbal
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pharmacology
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Gene Regulatory Networks
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drug effects
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Humans
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Ligusticum
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chemistry
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Molecular Targeted Therapy
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Rhizome
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chemistry
2.Analysis of survey results of endemic fluorosis in Shandong province in 2008
Zhong-jie, YUN ; Pei-zhong, CHEN ; Jian-chao, BIAN ; Yu-tao, WANG ; Heng-xiang, LI ; Yuan, LIU
Chinese Journal of Endemiology 2011;30(1):51-55
Objective To investigate the current status of endemic fluorosis in Shandong province, and to provide scientific evidence for the development of control strategies. Methods According to "The National Technical Scheme for Endemic Disease Control in 2007", 19 counties were chosen to carry out the epidemiological investigation in 2008. Water and urinary fluoride were determined by F-ion selective electrode, dental fluorosis of children aged 8 to 12 were diagnosed by Dean method and skeletal fluorosis of adults over the age of 16 were examined clinically and by X-rays. Results In 19 counties, 186 villages were surveyed, 44 villages were found with mean water fluoride ≤ 1.00 mg/L, accounting for 23.66%(44/186);the value > 1.00 mg/L in 142 villages,accounting for 76.34% (142/186);maximum water fluoride 8.88 mg/L. Total detection rate of dental fluorosis of children aged 8 to 12 was 66.35% (4518/6809), dental fluorosis index was 1.55, and defect rate was 15.39%(1048/6809). Children with urinary fluoride > 1.40 mg/L was 83.29%(2149/2580), and the maximum value was 31.92 mg/L. Detection rates of skeletal fluorosis clinically and by X ray among adults over 16 years were 6.37%(5577/87 607) and 20.23% (229/1132), respectively. Conclusions Endemic fluorosis in Shandong province is still serious, prevention efforts need to be further increased.
3.Sress cardiomyopathy:clinical features and imaging findings
Shi-Hua ZHAO ; Chao-Wu YAN ; Zuo-Xiang HE ; Shi-Liang JIANG ; Min-Jie LU ; Shi-Guo LI ; Qiong LIU ;
Chinese Journal of Radiology 2001;0(07):-
Objective One typical case with stress cardiomyopathy was reported and the current knowledge of the syndrome was reviewed to improve relevant knowledge.Methods A 71-year-old female patient presented dyspnea and chest pain due to emotional stress.ECG,echocardiography,selective coronary artery angiography,left ventriculography,~(99)Tc~m-MIBI single photon emission computed tomography (SPECT),~(18)F-FDG SPECT and MRI were performed.Results Electrocardiogram at admission showed ST segment elevation and T wave inversion in leads V1—V4.Pathological Q wave occurred 1 week later,it disappeared 1 month later however and severe T wave inversion occurred.Normal or slightly elevated cardiac enzymes in the blood were found during the course.Left ventriculogram at admission showed left ventricular apical ballooning with LVEF of 30%.The ballooning volume was about 3/4 of left ventricular volume, without any corresponding coronary artery diseases found in coronary angiogram.The abnormal apical ballooning decreased significantly in the follow-up left ventriculogram performed one month later.The LVEF rose up to 63.6%.~(99)Tc~m-MIBI and ~(18)F-FDG SPECT showed mismatch of perfusion and metabolism in the corresponding region,indicating presence of viable myocardium.MRI showed left ventricular apical ballooning without perfusion defect and late enhancement,indicating viability of corresponding myocardium. Conclusions Emotional stress can cause transient left ventricular apical ballooning called"stress cardiomyopathy".Either ~(99)Tc~m-MIBI SPECT associated with ~(18)F-FDG SPECT or delayed enhancement MRI plays an important role in identification of myocardial viability,which can efficiently guide clinical treatment.
5.The dynamic observation of corneal nerve regeneration by laser scanning confocal microscope after femtosecond laser in situ keratomileusis
Shi-chao, HAN ; Yan, LI ; Chuan-bo, CUI ; Fa-xiang, HAO ; Hong-jing, SHEN ; Jun-jie, XIAO
Chinese Journal of Experimental Ophthalmology 2013;32(11):1074-1078
Background Femtosecond laser in situ keratomileusis (LASIK) inevitably injury keratocytes and corneal nerve fibers.The research report about postoperative morphological changes of corneal nerve regeneration and keratocytes in femtosecond LASIK is still rare.Objective The aim of this study was to observe the kinetic changes of keratocytes and corneal nerve in corneal flap after femtosecond LASIK.Method Femtosecond laser manufacture corneal flap of LASIK surgery was performed on 60 eyes of 30 patients with refractive error using both femtosecond laser system and excimer laser treatment system.The repair of corneal wound was examined by slit lamp microscope,and the morphology of keratocytes and corneal nerve were observed with confocal microscope 1 week,1month,3 months after surgery,respectively.Results No haze or flap folds were found under the slit lamp microscope from 1 week through 3 months after operation.One week after surgery,the corneal stromal cells at the interface of the corneal flap appeared to be a mild activation status in 42 eyes (70%),but the activated cells gradually reduced with lapse of time.Three months after surgery,mild activation state still was found in 7 eyes (12%).One week after surgery,independent,short (<50 μm),curved subbasal nerve fibers were exhibited in 7 eyes (12%),and curved filamentous nerve fibers were discovered in 48 eyes (80%) one month after surgery.The nerve fiber length of subbasal nerve was >200 μm in 27 eyes (45%) and classes beaded structure appeared 3 months after operation but were still different with preoperative subbasal nerve fibers.One week after the operation,filaments or discontinuous nerve fibers could been seen in 46 eyes (77%) at theinterface,and long nerve fibers or filamentous nerves were visible around the terminal or periphery of nerve fibers in 49 eyes (82%) one month after surgery,and long nerve fibers or filaments of nerve fibers were visible in 57 eyes (95%) 3 months after the surgery.Conclusions Femtosecond LASIK cause wound reaction at cellular level.Corneal nerve fibers recover with the extension of time,but there are still some morphological differences 3 months after surgery from preoperation.
6.Feasibility of endoscopic surgery by paravertebral approach in far lateral lumbar disc herniation.
Chao-Yue ZHANG ; Ke-Xiang ZHANG ; Jie XIAO
Journal of Central South University(Medical Sciences) 2008;33(12):1148-1153
OBJECTIVE:
To evaluate the feasibility of endoscopic paravertebral approach surgery in the far lateral lumbar disc herniation.
METHODS:
Fifty sets of integral lumbar vertebral specimens were selected, and the anatomical data of lumbar intervertebral foramina and its adjacent structures were measured. Twenty specimens are randomly divided into a traditional group and an endoscopic group, then the traditional and endoscopic operations by paravertebral approach were used to dissect every strata of soft tissues in order to expose the intervertebral foramen. At last,the relationship between the intervertebral foramen and its adjacent structures was observed, and the 2 procedures were compared.
RESULTS:
The sagittal diameter of lumbar intervertebral foramina became shorter from the top to bottom,while the diameter of cross section of relative nerve roots became longer. The depth of the line which connected the middle point of the 2 adjacent transverse process roots and the anterior branch of lumber nerve root in L1,L3 and L5 was (1.03+/-0.30), (1.71+/-0.29), and (1.99+/-0.34) mm respectively, with the increasing tendency; the depth of L3 to L5 was mostly less than 2 cm. The distance of the middle points of the 2 adjacent transverse process roots from L1 to L5 was long enough, but the distance between L5 and S1 was only (10.14+/-1.71) mm. The surgery by paravertebral approach had a relative safe operation area,which was similar to a triangle.
CONCLUSION
The technique of endoscopic surgery by paravertebral approach is feasible in the treatment of far lateral lumbar disc herniation. However, it is difficult to perform this surgery in the treatment of L5/S1 far lateral lumbar disc herniation, which is often conducted with endoscopy, after 18 to approximately 20 mm of the partial sacrum is eliminated by conventional method.
Adult
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Cadaver
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Diskectomy
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methods
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Endoscopy
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methods
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Feasibility Studies
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Female
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Humans
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Intervertebral Disc Displacement
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classification
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surgery
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Lumbar Vertebrae
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surgery
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Male
7.Survey of water improvement project to reduce fluoride in Shandong province
Pei-zhong, CHEN ; Zhong-jie, YUN ; Heng-xiang, LI ; Jian-chao, BIAN ; Ai-hua, MA ; Hong-xu, GAO ; Yu-tao, WANG ; Jie, GAO
Chinese Journal of Endemiology 2011;30(1):64-67
Objective To investigate the present situation of water-improving defluoridation project and the distribution of water fluoride in fluorosis areas in Shandong province. Methods In 2005 - 2007, according to "The National and Shandong province Technical Scheme for Endemic Disease Control", the water-improving form,water type and the running status of defluoridation project in 17 cities of Shandong province were investigated, and the water-fluoride of the running projects were determined by F- ion selective electrode. Results A total of 5816projects were built that involved 8776 villages, 110 counties, 17 cities distributed in Shandong province. In which,the drilling of water-improving projects accounting for 94.55% (5499/5816), under-ground water type 97.73%(5684/5816);operating normally accounting for 75.91% (4415/5816), 7246 villages were supplied with the water, beneficiary population 6 946 459 people, non-normal projects accounting for 24.09%(1401/5816), including 1530 diseased villages. There were still 4415 projects running well. The projects with water fluoride lower than 1.0mg/L were 2893, accounting for 65.53% (2893/4415). The water fluoride higher than 1.0 mg/L accounted for 34.47%(1522/4415), > 2.0 mg/L of 548, > 4.0 mg/L of 97, and the maximum value of water fluoride was 9.71mg/L. Conclusions Nearly 1/4 of the water-improving projects in Shandong province are abnormal. The water fluoride of the project of more than 1/3 are exceeding the standard( > 1.0 mg/L) in 4415 projects, and water-fluoride of 97 projects are higher than 4.0 mg/L. More measures should be taken to strengthen the supervision of the projects and monitoring of water fluoride.
8.Epidemiological investigation of endemic fluorosis of Shandong province in 2010
Zhong-jie, YUN ; Pei-zhong, CHEN ; Jian-chao, BIAN ; Yu-tao, WANG ; Jie, GAO ; Yu-yan, YIN ; Heng-xiang, LI ; Yuan, LIU
Chinese Journal of Endemiology 2012;31(5):571-575
Objective To investigate the current status of endemic fluorosis in Shandong province,and to provide a scientific basis for the development of preventive strategies.Methods In accordance with the requirements of the national Technical Implementation Plan for Endcmic Disease Control Project in 2009 and Drinking-Water-Borne Endemic Fluorosis Monitoring Program (trial),ten counties were selected to carry out the epidemiological investigation,to understand the progress and the effect of the water improvement projects; three villages were selected in each county,to determine fluoride content of drinking water,to check dental fluorosis of children aged 8 to 12 and skeletal fluorosis of adults over the age of 25.Water fluoride content was determined by fluoride ion selective electrode method,children dental fluorosis was diagnosed with Dean method and adults skeletal fluorosis by the National Standard for Diagnosis of Endemic Skeletal Fluorosis (WS 192-2008).Results There were a total of 687 improved-water defluoridation projects of the 10 counties,the improved-water rate was 83.34% (3247/3896).The investigation was taken place in 84 improved-water projects of the 10 counties,the projects running normally accounted for 98.81% (83/84); 41 projects had water fluoride concentration ≤1.20 mg/L,and the pass rate was 48.81%(41/84),with the maximum water fluoride as 5.76 mg/L.In the 26 villages with improved-water projects of the 10 counties,villages with a mean water fluoride ≤ 1.20 mg/L were 15,which accounted for 57.69% (15/26),> 1.20 mg/L were 11,which accounted for 42.31% (11/26),with the maximum water fluoride as 5.58 mg/L.In the 4 yet to improve water quality villages of the 10 counties,1 village had mean water fluoride ≤ 1.20 mg/L,3 villages had mean water fluoride > 1.20 mg/L,with the maximum water fluoride as 2.92 mg/L.A total of 1331 children aged 8 to 12 were checked in the 26 improved water villages,the detection rate of dental fluorosis was 59.73% (795/1331),the index of dental fluorosis was 1.17 and the defect rate was 10.14% (123/1331).A total of 138 children aged 8 to 12 were checked in the 4 yet to improve water quality villages,the detection rate of dental fluorosis was 51.45%(71/138),the index of dental fluorosis was 0.95 and the defect rate was 0.72% (1/138).In water quality improved villages and yet to improve water quality villages,X-ray detection rates of skeletal fluorosis were 8.80% (113/1284) and 3.05% (6/197),respectively,in adults over the age of 25.Conclusions The water fluoride content of improved-water defluoridation projects exceeds the national standard seriously and fluorosis has not been effectively controlled in Shandong province.
9.Comparison of body fluorine levels in Liangshan and Boxing counties of Shandong province from 2007 to 2009
Jie, GAO ; Zhong-jie, YUN ; Pei-zhong, CHEN ; Jian-chao, BIAN ; Yu-tao, WANG ; Heng-xiang, LI ; Hong-xu, GAO ; Ai-hua, MA
Chinese Journal of Endemiology 2012;31(2):199-201
ObjectiveTo find out the condition of endemic fluorosis in Liangshan and Boxing counties of Shandong province,and to provide the basis for future prevention and treatment of the disease.MethodsIn 2007 -2009,100 water facilities per year were selected in each county and the water fluoride was tested in Liangshan and Boxing counties of Shandong province.Ten households were selected and their water fluoride content was measured.Dental fluorosis prevalence and dental fluorosis index of school children aged 8 - 12 were checked in all monitored places(3 villages in each county).Meanwhile,urinary fluoride was detected in children carried dental fluorosis test.ResultsIn 2007 - 2009,the median of urinary fluoride in Liangshan county was 2.35,3.73 and 1.29 mg/L,respectively; dental fluorosis detection rate was 72.73% (88/121),78.08% (57/73),and 70.64% (77/109),and the dental fluorosis index was 1.43,1.76 and 1.34.While in Boxing county,the median of urinary fluoride was 4.50,6.71 and 5.64 mg/L; dental fluorosis detection rate was 95.93% (118/123),99.06% (105/106),94.41%(152/161) and dental fluorosis index was 2.23,2.54 and 2.09,respectively.ConclusionsThe effect of prevention and control of endemic fluorosis in Liangshan county was better than that of Boxing county of Shandong province.Altering water source is an important measure to control endemic fluorosis.More defluoridation project should be carried out in endemic fluorosis areas.
10.Analysis of monitoring results of endemic fluorosis in Shandong province in 2009
Zhong-jie, YUN ; Pei-zhong, CHEN ; Jian-chao, BIAN ; Yu-tao, WANG ; Jie, GAO ; Ai-hua, MA ; Yuan, LIU ; Heng-xiang, LI
Chinese Journal of Endemiology 2011;30(2):188-193
Objective To investigate the current status of endemic fluorosis in Shandong province, and to provide the scientific evidence for making strategies for prevention and control of the disease. Methods According to "The National Technical Scheme for Endemic Disease Control in 2008", thirty-four counties were divided into mild, moderate and severe endemic fluorosis areas and a village was randomly selected from each category of the area to carry out the monitoring of endemic fluorosis. The content of fluoride in drinking water and urine was determined by F-ion selective electrode, dental fluorosis of children aged 8 to 12 was diagnosed by Dean method and skeletal fluorosis diagnosed by clinic and X-rays. Results The monitoring was done in 70 water-improving villages in 34 counties, among which 54 villages had water fluoride content ≤ 1.00 mg/L and accounted for 77.14%(54/70), 16 villages had water fluoride content > 1.00 mg/L and accounted for 22.86%(16/70), the highest water fluoride content was 4.46 mg/L. The monitoring was also carried out in 32 non-water-improving villages in 34 counties, among which 9 villages had water fluoride content ≤ 1.00 mg/L and accounted for 28.12%(9/32), 23 villages had water fluoride content > 1.00 mg/L and accounted for 71.88% (23/32), the highest water fluoride content was 4.09 mg/L. The total rate of dental fluorosis of children aged 8 to 12 was 45.81%(1988/4340), the index of dental fluorosis was 0.97 and the rate of dental damage was 6.91%(300/4340). The urinary fluoride values above 1.40 mg/L were found in 55.33%(1417/2657) of children aged 8 to 12, with the highest urinary fluoride concentrations was 18.53 mg/L. The rate of skeletal fluorosis by clinic and X-rays in adults older than 16 years were 4.25% (2462/57 968) and 28.40%(23/81 ), respectively. The urinary fluoride values above 1.60 mg/L were found in 55.86% (1130/2023) of adults older than 16 years, with the highest urinary fluoride concentrations was 25.44 mg/L. Conclusions Endemic fluorosis in Shandong province has not yet been effectively controlled,control situation is still grim. Prevention efforts need to be further strengthened.