3.Molecular and epidemiological study on among children under 5 years old in Nanjing.
Xiao-Le LI ; Dan-Di LI ; Wei-Xia CHENG ; Guang-Cheng XIE ; Xiao-Qian GAO ; Gui-Ping KONG ; Yu JIN ; Zhao-Jun DUAN
Chinese Journal of Experimental and Clinical Virology 2012;26(1):14-17
OBJECTIVETo study the infected information, clinical symptom and molecular epidemiological characteristics of HuCV infection among children under 5 years old in Nanjing.
METHODSIn Nanjing Children's Hospital of Nanjing Medical University from July 2010 to June 2011, we collected 428 stool specimens from children with diarrhea and 428 asymptomatic controls. Human Calicivirus were tested by using RT-PCR. Then we sequenced the nucleic acid of PCR amplifications and identified the genotype and gene group of prevalent strains.
RESULTS63 (14.72%) out of 428 stool samples were detected as HuCV. 58 were norovirus and 5 were sapovirus, while GII-4 2006b was the predominant strain of NoV. In the 428 control samples, 19 samples were positive for calicivirus, there were 8 NoV and 13 SaV (Including 3 co-infection cases).
CONCLUSIONHuman caliciviruses with different genotypes circulated among children in Nanjing,and GII. 2006b is the dominant genotype.
Caliciviridae ; classification ; genetics ; isolation & purification ; Caliciviridae Infections ; epidemiology ; virology ; Child, Preschool ; China ; epidemiology ; Diarrhea ; epidemiology ; virology ; Female ; Genotype ; Humans ; Infant ; Infant, Newborn ; Male ; Molecular Epidemiology ; Phylogeny ; Seasons
4.Epidemiological and etiological characteristics of diarrheal disease among children under 5 years of age in Guangdong province, in 2012.
Li-mei SUN ; Hui LI ; Xiao-hua TAN ; Ling FANG ; Ai-ping DENG ; Yan-ling MO ; Jian-feng HE ; Chang-wen KE ; Jin-yan LIN
Chinese Journal of Epidemiology 2013;34(10):989-992
OBJECTIVETo analyze the epidemiological and etiological characteristics of diarrheal disease among children under 5 years of age in Guangdong province, in 2012.
METHODS64 hospitals in 21 cities were chosen as the diarrheal syndromic surveillance sites, of which 14 hospitals were selected to carry out etiological surveillance among children under 5 years of age, including isolation and culture of both Vibrio cholera and Shigella as well as nucleic acid detection of rotavirus and norovirus by PCR. Descriptive method was used to analyze data from syndromic and etiological surveillance programs on diarrheal, from 1932 parents of the children.
RESULTSIn 2012, the outpatient attendance rate on diarrheal among children under 5 years was 0.8%. The proportion of diarrheal in children under 5-year-olds was 63.5%, among the total number of diarrheal outpatients at the outpatient clinics under surveillance program. The morbidity of infectious diarrhea was 1454.5/10 million in children under 5 years of age. A total number of 1932 specimens were collected from children under 5 years of age, in the outpatient department. Among these specimens,Vibrio cholera appeared all negative but one was Shigella positive and proved to be Sh. sonnei. The positive rates of rotavirus and norovirus were 14.1% (273/1932)and 16.9% (326/1932). Both rotavirus and norovirus were found in 24 specimens, with a positive rate as 1.2% . 112 specimens were successfully gene sequenced for rotavirus, of which 33.9% as G1[P8] genotype, 25.9% as G9[P8], 12.5% as G2[P4] and 9.8% as G3[P8] respectively. 90 specimens were successfully gene-sequenced for norovirus, of which 76.7% as G II.4 genotype. Genetic subtypes of G II. 4/2006b, accounted for 50.0% and could be detected around the year except for June and December. New G II. 4/Sydney Strain_2012 was first detected in August and became the predominant in December. In addition, 5 specimens belonged to G I genotype with other 16 subtypes of G II.
CONCLUSIONResults from our study proved that children under 5 years of age belonged to high-risk group for diarrheal disease in Guangdong province. Rotavirus and norovirus were both diverse in terms of genome.
Caliciviridae Infections ; epidemiology ; Child, Preschool ; China ; epidemiology ; Diarrhea ; epidemiology ; microbiology ; virology ; Female ; Genotype ; Humans ; Infant ; Male ; Rotavirus Infections ; epidemiology
5.Molecular epidemiology of noroviruses in Shenzhen in 2006.
Ya-qing HE ; Bin FENG ; Hai-long ZHANG
Chinese Journal of Epidemiology 2009;30(11):1214-1215
6.Molecular epideiological and clinical feature of human calicivirus and adenovirus among children with diarrhea less than 5 years old from 2010 to 2011 in Lanzhou, Gansu province.
Yong-Xia WANG ; Dan-Di LI ; Yu JIN ; Qing ZHANG ; Hong WANG ; Xiang-Yu KONG ; Yu-Ning LI ; Zhao-Jun DUAN
Chinese Journal of Experimental and Clinical Virology 2012;26(1):8-10
OBJECTIVETo investigate the clinical and molecular epidemiology characteristics of calicivirus and adenovirus in children for viral diarrhea in Lanzhou.
METHODSStool samples were collected from 295 children with diarrhea at the First Hospital of Lanzhou University, Gansu Province,China, between July 2010 and June 2011. Reverse transcription-polymerase chain reaction (RT-PCR) or PCR were used to detected calicivirus and adenovirus. The adenovirus positive samples were typed by nested PCR and multiple PCR.
RESULTSOf the 295 specimens, 13.2% (39/295) were positive for calicivirus, and 5.1% (15/295) were adenovirus. Typing and Phylogenetic analysis revealed that novirus GII-3 and adenovirus 41 were the dominant strains. Both calicivirus and adenovirus predominately affect children under the age of 2. In seasonal distribution, there was no obvious peak.
CONCLUSIONHuman calicivirus and adenovirus are important pathogens of viral diarrhea,it is important to develop long-term systematic surveillance.
Adenoviridae Infections ; epidemiology ; virology ; Adenoviruses, Human ; genetics ; Caliciviridae ; genetics ; Caliciviridae Infections ; epidemiology ; virology ; Child, Preschool ; China ; epidemiology ; Diarrhea ; epidemiology ; virology ; Female ; Humans ; Infant ; Infant, Newborn ; Male ; Molecular Epidemiology ; Time Factors
8.Coinfection of Viral Agents in Korean Children with Acute Watery Diarrhea.
Hong KOH ; Seoung Yon BAEK ; Jae Il SHIN ; Ki Sup CHUNG ; Young Mee JEE
Journal of Korean Medical Science 2008;23(6):937-940
Currently, there are a few reports on viral coinfection that causes an acute watery diarrhea in Korean children. So, to evaluate the features of coinfectious viral agents in children with acute watery diarrhea, we enrolled 155 children with acute watery diarrhea from July 2005 to June 2006. Fecal samples were collected and evaluated for various viral infections such as rotavirus, norovirus, adenovirus and astrovirus. The mean (+/-standard deviation) age of the children was 2.71+/-2.37 yr. The detection rate of viral agents was most common in children between the ages of 1 and 3 yr. Rotavirus was detected in 63 children (41.3%), norovirus in 56 (36.2%), adenovirus in 11 (7.1%), and astrovirus in 1 (0.6%). Regarding rotavirus, there were 38 (60.3%) cases with monoinfection and 25 (39.7%) with coinfection. For norovirus, there were 33 (58.9%) cases with monoinfection and 23 (41.1%) with coinfection. Coinfection with rotavirus and norovirus was most common, and occurred in 20/155 cases (12.9%) including coinfection with adenovirus. So, rotavirus and norovirus were the most common coinfectious viral agents in our study population with acute watery diarrhea.
Acute Disease
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Adenovirus Infections, Human/epidemiology
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Astroviridae Infections/epidemiology
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Caliciviridae Infections/epidemiology
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Child
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Child, Preschool
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Diarrhea/epidemiology/*virology
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Feces/virology
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Humans
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Infant
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Korea/epidemiology
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Norovirus/isolation & purification
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Rotavirus Infections/epidemiology
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Virus Diseases/complications/*epidemiology/virology
9.The molecular epidemiology characteristics of norovirus in environment and clinical samples in Guangzhou from 2009 to 2011.
Lan LUO ; Xin-wei WU ; Yu-fei LIU ; Qiao-yan LI ; Hua-ping XIE ; Ye-jian WU ; Lei LI ; Li-yun JIANG ; Xia YANG
Chinese Journal of Preventive Medicine 2013;47(1):40-43
OBJECTIVETo investigate the molecular epidemiological characteristics of norovirus in Guangzhou from 2009 to 2011.
METHODSA total of 183 water samples, 1162 seafood samples and 1066 diarrhea stool specimens were collected from January 2010 to May 2011, June 2009 to June 2011 and July 2009 to December 2010 respectively in Guangzhou. Norovirus was detected by real time reverse transcript-PCR (qRT-PCR). The partial polymerase gene was amplified from norovirus positive samples, then sequenced and compared with the sequences of norovirus in GenBank. The phylogenetic tree was created.
RESULTSThe positive rate was 19.67% (36/183), 8.26% (96/1162) and 37.05% (395/1066) in water samples, seafood and diarrhea patients respectively. Noroviruses from positive samples could be divided into 10 representative strains, in which 7 representative strains of genotype of 208 samples was type G2-4. The sequences from water, seafood and stool specimens were highly homologous with the similarity of 94% - 100%.
CONCLUSIONIn Guangzhou, the predominant Norovirus genotype was G2-4 and the positive rate of samples was high.
Base Sequence ; Caliciviridae Infections ; epidemiology ; virology ; China ; epidemiology ; Diarrhea ; virology ; Genotype ; Humans ; Molecular Epidemiology ; Norovirus ; classification ; genetics ; isolation & purification ; Phylogeny ; RNA, Viral ; genetics ; Seafood ; virology ; Water Microbiology
10.Epidemic and control strategy on nosocomial outbreak of norovirus gastroenteritis.
Acta Academiae Medicinae Sinicae 2008;30(5):614-617
Noroviruses are the leading cause of acute viral gastroenteritis in human beings and frequently cause the outbreaks of nosocomial infections. Based on the pathogenic characteristics of noroviruses, this article describes the epidemiological and clinical characteristics of norovirus gastroenteritis outbreak in hospital and explores the measures to prevent and control the nosocomial outbreak.
Caliciviridae Infections
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epidemiology
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prevention & control
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virology
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Cross Infection
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epidemiology
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prevention & control
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virology
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Disease Outbreaks
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Gastroenteritis
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epidemiology
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prevention & control
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virology
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Humans
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Infection Control
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Norovirus
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physiology