1.Identification of signature gene set as highly accurate determination of metabolic dysfunction-associated steatotic liver disease progression
Sumin OH ; Yang-Hyun BAEK ; Sungju JUNG ; Sumin YOON ; Byeonggeun KANG ; Su-hyang HAN ; Gaeul PARK ; Je Yeong KO ; Sang-Young HAN ; Jin-Sook JEONG ; Jin-Han CHO ; Young-Hoon ROH ; Sung-Wook LEE ; Gi-Bok CHOI ; Yong Sun LEE ; Won KIM ; Rho Hyun SEONG ; Jong Hoon PARK ; Yeon-Su LEE ; Kyung Hyun YOO
Clinical and Molecular Hepatology 2024;30(2):247-262
Background/Aims:
Metabolic dysfunction-associated steatotic liver disease (MASLD) is characterized by fat accumulation in the liver. MASLD encompasses both steatosis and MASH. Since MASH can lead to cirrhosis and liver cancer, steatosis and MASH must be distinguished during patient treatment. Here, we investigate the genomes, epigenomes, and transcriptomes of MASLD patients to identify signature gene set for more accurate tracking of MASLD progression.
Methods:
Biopsy-tissue and blood samples from patients with 134 MASLD, comprising 60 steatosis and 74 MASH patients were performed omics analysis. SVM learning algorithm were used to calculate most predictive features. Linear regression was applied to find signature gene set that distinguish the stage of MASLD and to validate their application into independent cohort of MASLD.
Results:
After performing WGS, WES, WGBS, and total RNA-seq on 134 biopsy samples from confirmed MASLD patients, we provided 1,955 MASLD-associated features, out of 3,176 somatic variant callings, 58 DMRs, and 1,393 DEGs that track MASLD progression. Then, we used a SVM learning algorithm to analyze the data and select the most predictive features. Using linear regression, we identified a signature gene set capable of differentiating the various stages of MASLD and verified it in different independent cohorts of MASLD and a liver cancer cohort.
Conclusions
We identified a signature gene set (i.e., CAPG, HYAL3, WIPI1, TREM2, SPP1, and RNASE6) with strong potential as a panel of diagnostic genes of MASLD-associated disease.
2.Efficacy and Safety of Letibotulinum Toxin A for the Treatment of Essential Blepharospasm
Ji Hyun KIM ; Doh Hoon CHUNG ; Sung Eun KIM ; Ji Sun PAIK ; Namju KIM ; Tae Yoon LA ; Jun Hyuk SON ; Hee Bae AHN ; Jae Wook YANG ; Kyung In WOO ; Helen LEW ; Jin Sook YOON ; Sang Un LEE ; Sung Bok LEE ; Jeong Kyu LEE ; Jae Woo JANG ; Ho Kyung CHOUNG ; Mijung CHI ; Suk Woo YANG
Journal of the Korean Ophthalmological Society 2020;61(3):227-234
PURPOSE: To evaluate the efficacy and safety of BOTULAX® in subjects with essential blepharospasm.METHODS: In this study, a total of 250 subjects with essential blepharospasm were enrolled at 15 investigational sites and a total of 220 subjects completed the study. The efficacy and safety were evaluated at weeks 4 and 16 after treatment compared with baseline. In total, 240 subjects were enrolled, treated with the investigational product, and evaluable for the primary efficacy assessment at week 4 after treatment; these subjects were included in the intention-to-treat (ITT) population. With the ITT set as the main efficacy set, efficacy assessment included Jankovic rating scale (JRS), functional disability score, investigator evaluation of global response and quality of life. Safety assessment including the incidence of adverse events was also performed.RESULTS: In terms of the primary efficacy endpoint (i.e., change in JRS total score at week 4 after treatment from baseline [ITT set]), mean change indicated a statistically significant reduction (p < 0.0001) and demonstrated the non-inferiority of the test drug to similar drugs. In terms of the secondary efficacy endpoints, mean change in JRS total score at week 16 after treatment and mean change in functional disability score at weeks 4 and 16 after treatment both exhibited a statistically significant reduction compared with baseline (p < 0.0001 for all). Among the 249 subjects treated with the investigational product in this study, 44 (17.67%) experienced 76 treatment emergent adverse events but no serious adverse events were observed.CONCLUSIONS: Based on the study results, BOTULAX® is considered to be an effective and safe treatment for essential blepharospasm.
3.Exosomal miR-181b-5p Downregulation in Ascites Serves as a Potential Diagnostic Biomarker for Gastric Cancer-associated Malignant Ascites
Jieun YUN ; Sang Bae HAN ; Hong Jun KIM ; Se il GO ; Won Sup LEE ; Woo Kyun BAE ; Sang Hee CHO ; Eun Kee SONG ; Ok Jun LEE ; Hee Kyung KIM ; Yaewon YANG ; Jihyun KWON ; Hee Bok CHAE ; Ki Hyeong LEE ; Hye Sook HAN
Journal of Gastric Cancer 2019;19(3):301-314
PURPOSE: Peritoneal carcinomatosis in gastric cancer (GC) patients results in extremely poor prognosis. Malignant ascites samples are the most appropriate biological material to use to evaluate biomarkers for peritoneal carcinomatosis. This study identified exosomal MicroRNAs (miRNAs) differently expressed between benign liver cirrhosis-associated ascites (LC-ascites) and malignant gastric cancer-associated ascites (GC-ascites), and validated their role as diagnostic biomarkers for GC-ascites. MATERIALS AND METHODS: Total RNA was extracted from exosomes isolated from 165 ascites samples (73 LC-ascites and 92 GC-ascites). Initially, microarrays were used to screen the expression levels of 2,006 miRNAs in the discovery cohort (n=22). Subsequently, quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR) analyses were performed to validate the expression levels of selected exosomal miRNAs in the training (n=70) and validation (n=73) cohorts. Furthermore, carcinoembryonic antigen (CEA) levels were determined in ascites samples. RESULTS: The miR-574-3p, miR-181b-5p, miR-4481, and miR-181d were significantly downregulated in the GC-ascites samples compared to the LC-ascites samples, and miR-181b-5p showed the best diagnostic performance for GC-ascites (area under the curve [AUC]=0.798 and 0.846 for the training and validation cohorts, respectively). The diagnostic performance of CEA for GC-ascites was improved by the combined analysis of miR-181b-5p and CEA (AUC=0.981 and 0.946 for the training and validation cohorts, respectively). CONCLUSIONS: We identified exosomal miRNAs capable of distinguishing between non-malignant and GC-ascites, showing that the combined use of miR-181b-5p and CEA could improve diagnosis.
Ascites
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Biomarkers
;
Carcinoembryonic Antigen
;
Carcinoma
;
Cohort Studies
;
Diagnosis
;
Down-Regulation
;
Exosomes
;
Humans
;
Liver
;
MicroRNAs
;
Prognosis
;
RNA
;
Stomach Neoplasms
4.Recognition of Accreditation for Nursing Education, Job Satisfaction and Intention to Change Teaching Area for Faculty in Fundamentals of Nursing.
Hyoung Sook PARK ; Seung Kyo CHAUNG ; Young Ok YANG ; Jinhyang YANG ; Myoung Soo KIM ; Yong Soon SHIN ; Dong Hee KIM ; Hyun Ju KIM ; Jongsoon WON ; Bok Hee CHO ; Kyung Yeon PARK
Journal of Korean Academy of Fundamental Nursing 2017;24(2):157-166
PURPOSE: This study was done to explore recognition of accreditation for nursing education, job satisfaction and intention to change teaching area for faculty in Fundamentals of Nursing. METHODS: Participants were 104 faculty members teaching Fundamentals of Nursing. Each participant responded to a questionnaire. Data were collected from June 25 to October 25, 2016, and analyzed using SPSS 23.0 for descriptive statistics, t-test, ANOVA, and Pearson correlation coefficient. RESULTS: The participants' recognition of accreditation in nursing education was 3.45±0.81 out of 5 and in the sub-items, the score for quality improvement in professors in Fundamentals of Nursing was lowest at 3.21±1.03. Job satisfaction was 3.30±5.30, and intention to change teaching area was 2.62±1.00. Attributes related to practice appear to be major reasons why participants intended to change their teaching area and scores for intention to change teaching area were medium or higher. CONCLUSION: Results indicate that it is necessary to develop strategies to improve job satisfaction and reduce intention to change teaching area for faculty with less experience in Fundamentals of Nursing education. Development of strategies, management and support are needed to improve young professors' job satisfaction and reduce intention to change teaching area.
Accreditation*
;
Education
;
Education, Nursing*
;
Intention*
;
Job Satisfaction*
;
Nursing*
;
Quality Improvement
5.Current Status of Management in Type 2 Diabetes Mellitus at General Hospitals in South Korea.
Jin Hee JUNG ; Jung Hwa LEE ; Jin Won NOH ; Jeong Eun PARK ; Hee Sook KIM ; Joo Wha YOO ; Bok Rye SONG ; Jeong rim LEE ; Myeong Hee HONG ; Hyang Mi JANG ; Young NA ; Hyun Joo LEE ; Jeong Mi LEE ; Yang Gyo KANG ; Sun Young KIM ; Kang Hee SIM
Diabetes & Metabolism Journal 2015;39(4):307-315
BACKGROUND: In Korea, the prevalence, complications, and mortality rate of diabetes are rapidly increasing. However, investigations on the actual condition of diabetes management are very limited due to lack of nation-wide research or multicenter study. Hence, we have minutely inquired the current status of diabetes management and achievement of glucose target goal in general hospital offering education program. That way, we are able to furnish data for policy making of diabetes education and draw up guideline which may allow us to reduce the morbidity and mortality of diabetes. METHODS: The subjects consisted of 2,610 patients with type 2 diabetes who visited the 13 general hospital in Seoul or Gyeonggi region from March 19 to May 29, 2013. General characteristics, associated diseases, complications, and management status were investigated. RESULTS: The mean age was 61.0+/-11.6 years, body mass index was 25.0+/-3.3 kg/m2, and family history of diabetes was 50.5%. The mean duration of diabetes was 10.7+/-7.9 years and 53% received education about diabetes. The prevalence of hypertension and dyslipidemia were 59.2% and 65.5%, respectively, and 18.3% of the subjects were accompanied by liver disease. Diabetic retinopathy appeared in 31.6%, nephropathy in 28.1%, and neuropathy in 19.9% of the subjects. The mean glycosylated hemoglobin (HbA1c) level was 7.3%+/-1.3% and the achieving rate based on Korean Diabetes Association guideline (HbA1c <6.5%) was 24.8%, blood pressure (130/80 mm Hg or less) was 49.4%, and low density lipoprotein cholesterol (<100 mg/dL) was 63.6%. The reaching rate to the target level in four parameters (blood glucose, blood pressure, lipids, and body weight) was 7.8%. CONCLUSION: The blood glucose control rate was lower than other parameters, and the implementation rate of diabetes education was only 53%. Thus more appropriate glucose control and systematic diabetes education are imperative.
Blood Glucose
;
Blood Pressure
;
Body Mass Index
;
Cholesterol, LDL
;
Diabetes Mellitus, Type 2*
;
Diabetic Retinopathy
;
Dyslipidemias
;
Education
;
Glucose
;
Gyeonggi-do
;
Hemoglobin A, Glycosylated
;
Hospitals, General*
;
Humans
;
Hypertension
;
Korea*
;
Liver Diseases
;
Mortality
;
Policy Making
;
Prevalence
;
Seoul
6.Clinical Safety of PMR(Palatal Muscle Resection) In Which Performed OSAS Patients.
Soo Kweon KOO ; Nam Sook MYUNG ; Jang Won CHOI ; Yang Jae KIM ; Soon Bok KWON
Journal of Rhinology 2012;19(2):101-106
BACKGROUND AND OBJECTIVES: The purpose of this study was to analyze clinical safety of PMR(Palatal Muscle Resection) in obstructive sleep apnea patients. MATERIALS AND METHODS: Fourteen Patients underwent only PMR were reviewed retrospectively. ESS(Epworth Sleepiness Scale) was analyzed after PMR surgery to assess surgical results. Visual Analogue Scale were reviewed to evaluate postoperative pain. Eustachian tube function test, voice analysis, and measurement of forced expiration power were done after two months of surgery. RESULTS: ESS were improved after PMR. There were little postoperative pain. There was no significant change is observed vowel sounds except /u/ nor postoperative nasalization in voice, Eustachian tube dysfunction and change of expiration power. CONCLUSION: PMR may be regarded clinically safe surgery in obstructive sleep apnea patient.
Eustachian Tube
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Humans
;
Muscles
;
Pain, Postoperative
;
Palate
;
Phonation
;
Retrospective Studies
;
Sleep Apnea Syndromes
;
Sleep Apnea, Obstructive
;
Voice
7.Clinical characteristics of 2009 pandemic influenza A (H1N1) infection in children and the performance of rapid antigen test.
Yong Jae PARK ; Jang Yong JIN ; Hyeon Jong YANG ; Woo Ryung LEE ; Dong Hwan LEE ; Bok Yang PYUN ; Eun Sook SUH
Korean Journal of Pediatrics 2011;54(10):405-408
PURPOSE: In autumn 2009, the swine-origin influenza A (H1N1) virus spread throughout South Korea. The aims of this study were to determine the clinical characteristics of children infected by the 2009 H1N1 influenza A virus, and to compare the rapid antigen and real-time polymerase chain reaction (PCR) tests. METHODS: We conducted a retrospective review of patients > or =18 years of age who presented to Soonchunhyang University Hospital in Seoul with respiratory symptoms, including fever, between September 2009 and January 2010. A real-time PCR test was used to definitively diagnose 2009 H1N1 influenza A infection. Medical records of confirmed cases were reviewed for sex, age, and the time of infection. The decision to perform rapid antigen testing was not influenced by clinical conditions, but by individual factors such as economic conditions. Its sensitivity and specificity were evaluated compared to real-time PCR test results. RESULTS: In total, 934 patients tested positive for H1N1 by real-time PCR. The highest number of patients (48.9%) was diagnosed in November. Most patients (48.2%) were aged between 6 and 10 years. Compared with the H1N1 real-time PCR test results, the rapid antigen test showed 22% sensitivity and 83% specificity. Seventy-eight patients were hospitalized for H1N1 influenza A virus infection, and fever was the most common symptom (97.4%). CONCLUSION: For diagnosis of 2009 H1N1 influenza A virus infection, the rapid antigen test was inferior to the real-time PCR test in both sensitivity and specificity. This outcome suggests that the rapid antigen test is inappropriate for screening.
Aged
;
Child
;
Fever
;
Humans
;
Influenza A virus
;
Influenza, Human
;
Mass Screening
;
Medical Records
;
Pandemics
;
Polymerase Chain Reaction
;
Real-Time Polymerase Chain Reaction
;
Republic of Korea
;
Retrospective Studies
;
Sensitivity and Specificity
;
Viruses
8.Job Analysis for Role Identification of General Hospice Palliative Nurse.
Boon Han KIM ; Sang Ok CHOE ; Bok Yae CHUNG ; Yang Sook YOO ; Hyun Sook KIM ; Kyung Ah KANG ; Su Jeong YU ; Yun JUNG
Korean Journal of Hospice and Palliative Care 2010;13(1):13-23
PURPOSE: This study was to identify the role of general hospice palliative nurse through job analysis (duties, task, and task elements). METHODS: The sample consisted of 136 nurses or professors who were performing duties related to hospice care areas in Korea. A survey method was used, and the questionnaire included frequencies, criticality, and difficulties of task elements in job description by the DACUM method. Descriptive statistics were performed by using SPSS WIN 17.0. RESULTS: The job description of general hospice palliative nurse was identified 8 duties, 36 tasks, and 137 task elements. As for the 8 duties, the average scores of frequency, criticality, and difficulty were 2.94, 3.66, and 2.80, respectively. The role of 'pain assessment' was the most important task element among frequency and criticality. The lowest score at the frequency and criticality were 'manage public finance' and 'collect datum through diagnostic test & lab', respectively. Furthermore, the role of 'identify spiritual needs of patients and family' was the most difficult task, whereas the role of 'manage documents and information' was the least. CONCLUSION: In this study, we could recognize the reality of general hospice palliative nurse's performances. For general hospice palliative nurse, therefore, concrete practice guide lines of psychosocial and spiritual care, communication skills, and bereavement care with qualifying system are critically needed.
Surveys and Questionnaires
;
Diagnostic Tests, Routine
;
Hospice Care
;
Hospices
;
Humans
;
Job Description
;
Korea
;
Nurse's Role
;
Nursing Staff
;
Task Performance and Analysis
9.Current Trends in the Epidemiological and Pathological Characteristics of Gastrointestinal Stromal Tumors in Korea, 2003-2004.
Mee Yon CHO ; Jin Hee SOHN ; Joon Mee KIM ; Kyoung Mee KIM ; Young Su PARK ; Woo Ho KIM ; Jin Sook JUNG ; Eun Sun JUNG ; So Young JIN ; Dae Young KANG ; Jae Bok PARK ; Ho Sung PARK ; You Duck CHOI ; Sun Hee SUNG ; Young Bae KIM ; Hogeun KIM ; Young Kyung BAE ; Miseon KANG ; Hee Jin CHANG ; Yang Seok CHAE ; Hee Eun LEE ; Do Youn PARK ; Youn Soo LEE ; Yun Kyung KANG ; Hye Kyung KIM ; Hee Kyung CHANG ; Soon Won HONG ; Young Hee CHOI ; Okran SHIN ; MiJin GU ; Youn Wha KIM ; Gwang Il KIM ; Sei Jin CHANG
Journal of Korean Medical Science 2010;25(6):853-862
Despite remarkable progress in understanding and treating gastrointestinal stromal tumors (GISTs) during the past two decades, the pathological characteristics of GISTs have not been made clear yet. Furthermore, concrete diagnostic criteria of malignant GISTs are still uncertain. We collected pathology reports of 1,227 GISTs from 38 hospitals in Korea between 2003 and 2004 and evaluated the efficacy of the NIH and AFIP classification schemes as well as the prognostic factors among pathologic findings. The incidence of GISTs in Korea is about 1.6 to 2.2 patients per 100,000. Extra-gastrointestinal GISTs (10.1%) are more common in Korea than in Western countries. In univariate analysis, gender, age, tumor location, size, mitosis, tumor necrosis, vascular and mucosal invasions, histologic type, CD34 and s-100 protein expression, and classifications by the NIH and AFIP criteria were found to be significantly correlated with patient's survival. However, the primary tumor location, stage and classification of the AFIP criteria were prognostically significant in predicting patient's survival in multivariate analysis. The GIST classification based on original tumor location, size, and mitosis is more efficient than the NIH criteria in predicting patient's survival, but the mechanism still needs to be clarified through future studies.
10.Chromosome 22 LD Map Comparison between Korean and Other Populations.
Jong Eun LEE ; Hye Yoon JANG ; Sook KIM ; Yeon Kyeong YOO ; Jung Joo HWANG ; Hyojung JUN ; Kyusang LEE ; Okkyung SON ; Jun Mo YANG ; Kwang Sung AHN ; Eugene KIM ; Hye Won LEE ; Kyuyoung SONG ; Hie Lim KIM ; Seong Gene LEE ; Yongsook YOON ; Kuchan KIMM ; Bok Ghee HAN ; Bermseok OH ; Chang Bae KIM ; Hoon JIN ; Kyoung O CHOI ; Hyojin KANG ; Young J KIM
Genomics & Informatics 2008;6(1):18-28
Single nucleotide polymorphisms (SNPs) are the most abundant forms of human genetic variations and resources for mapping complex genetic traits and disease association studies. We have constructed a linkage disequilibrium(LD) map of chromosome 22 in Korean samples and compared it with those of other populations, including Yorubans in Ibadan, Nigeria (YRI), Centred'Etude du Polymorphisme Humain (CEPH) reference families (CEU), Japanese in Tokyo (JPT) and Han Chinese in Beijing (CHB) in the HapMap database. We genotyped 4681 of 111,448 publicly available SNPs in 90 unrelated Koreans. Among genotyped SNPs, 4167 were polymorphic. Three hundred and five LD blocks were constructed to make up 18.6% (6.4 of 34.5 Mb) of chromosome 22 with 757 tagSNPs and 815 haplotypes(frequency > or = 5.0%). Of 3430 common SNPs genotyped in all five populations, 514 were monomorphic in Koreans. The CHB + JPT samples have more than a 72% overlap with the monomorphic SNPs in Koreans, while the CEU + YRI samples have less than a 38% overlap. The patterns of hot spots and LD blocks were dispersed throughout chromosome 22, with some common blocks among populations, highly concordant between the three Asian samples. Analysis of the distribution of chimpanzee-derived allele frequency (DAF), a measure of genetic differentiation, Fst levels, and allele frequency difference (AFD) among Koreans and the HapMap samples showed a strong correlation between the Asians, while the CEU and YRI samples showed a very weak correlation with Korean samples. Relative distance as a quantitative measurement based upon DAF, Fst, and AFD indicated that all three Asian samples are very proximate, while CEU and YRI are significantly remote from the Asian samples. Comparative genome-wide LD studies provide useful information on the association studies of complex diseases.
Asian Continental Ancestry Group
;
Chromosomes, Human, Pair 22
;
Gene Frequency
;
Genetic Variation
;
Haplotypes
;
HapMap Project
;
Humans
;
Nigeria
;
Polymorphism, Single Nucleotide
;
Tokyo

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