2.Applications of metabonomics in clinical diagnosis.
Zhong-Ying LIN ; Shi-Kai YAN ; Wei-Xing DAI ; Yun YANG ; Hui-Zi JIN ; Chuan ZHANG ; Wei-Dong ZHANG
Acta Academiae Medicinae Sinicae 2007;29(6):811-817
Metabonomics, as a newly developed technique, is expected to be a powerful technique in clinical diagnosis. Metabonomics-based diagnosis involves the global metabolic analysis of body-fluids, determination of biomarkers by multivariate statistic analysis, and establishemen of mathematic models for clinical diagnosis with the aid of pattern recognition. This article reviews the adoption of various analytical and computational strategies, application of metabonomics in clinical diagnosis, and potential challenges and development trends.
Biomarkers
;
metabolism
;
Body Fluids
;
metabolism
;
Diagnostic Techniques and Procedures
;
Humans
;
Metabolome
;
Metabolomics
;
methods
;
Models, Theoretical
;
Multivariate Analysis
3.Metabonomics in the diagnosis and treatment of male infertility.
Jiao-Ying MA ; Rui-Yu HAN ; Jing MA ; Shu-Song WANG
National Journal of Andrology 2017;23(8):745-750
Metabonomics is an emerging branch of science for the study of endogenous small molecule metabolites in organisms, which plays an important role in evaluatingthediagnosis and treatment of male infertility by exploring the metabolites of body fluids, cells and tissues. With its advantages ofmass information, noninvasiveness, and celerity, metabonomics will be widely applied to clinical researches in the future. This review introducesmetabonomics and its analytical techniques and data processing procedures,its latest application in the studies of the etiology, diagnosis and the treatment of male infertility, and the prospect of its future application in the researches of male reproduction.
Body Fluids
;
metabolism
;
Humans
;
Infertility, Male
;
diagnosis
;
etiology
;
metabolism
;
therapy
;
Male
;
Metabolomics
4.Pathophysiology and management of disorders in water metabolism.
Korean Journal of Pediatrics 2007;50(5):430-435
Even though we drink and excrete water without recognition, the amount and the composition of body fluid remain constant everyday. Maintenance of a normal osmolality is under the control of water balance which is regulated by vasopressin despite sodium concentration is the dominant determinant of plasma osmolality. The increased plasma osmolality (hypernatremia) can be normalized by the concentration of urine, which is the other way of gaining free water than drinking water, while the low plasma osmolality (hyponatremia) can be normalized by the dilution of urine which is the only regulated way of free water excretion. On the other hand, volume status depends on the control of sodium balance which is regulated mainly by renin-angiotensin-aldosterone system, through which volume depletion can be restored by enhancing sodium retention and concomitant water reabsorption. This review focuses on the urine concentration and dilution mechanism mediated by vasopressin and the associated disorders; diabetes insipidus and syndrome of inappropriate antidiuretic hormone secretion.
Body Fluids
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Diabetes Insipidus
;
Drinking Water
;
Hand
;
Metabolism*
;
Osmolar Concentration
;
Plasma
;
Renin-Angiotensin System
;
Sodium
;
Vasopressins
5.Cell Wall Proteins of Staphylococcus aureus Responsive to Oxygen Tension and Iron Concentration.
Seung Il LEE ; Yong LIM ; Sung Heui SHIN
Korean Journal of Infectious Diseases 2001;33(4):292-297
BACKGROUND: We previously reported that activity of iron-uptake systems (IUS) influenced on the growth of Staphylococcus aureus in laboratory medium and body fluids according to the iron and oxygen concentrations, which they are closely related each other in several microbial metabolism. In the present study, we tried to investigate the profiles of cell wall proteins of S. aureus according to the change of iron and oxygen concentrations. METHODS: SR-1 strain, whose IUS are defective, was isolated from the standard strain ATCC 6538 by repeated exposure against streptonigrin. These two strains were cultured under the aerobic, microaerobic and anaerobic conditions in the iron-sufficient BHI and iron-depleted BHI, respectively. Cell wall proteins were visualized by Coomassie staining after SDS-PAGE. RESULTS: Cell wall proteins of the both strains were expressed more than under the aerobic condition than under the anaerobic condition in the iron-sufficient medium as well as in the iron-deficient medium. However, expression of cell wall proteins of SR-1 strain was markedly inhibited compared to that of parental ATCC 6538 strain, especially in the iron-deficient medium. Among the proteins more expressed under the aerobic culture condition in the iron-deficient medium, about 88, 55, 39, 36, 35 and 33 kDa of proteins were iron-repressible and oxygen-inducible, and corresponded to the iron-repressible proteins which other researchers reported. CONCLUSION: Expression of cell wall proteins of S. aureus was affected by simultaneous and respective change of iron and oxygen concentrations. Activity of IUS influenced more on the expression of cell wall proteins of S. aureus in the iron-deficient environment than in the iron-sufficient environment. These results suggest the possibility that the iron-repressible and oxygen-inducible proteins mimic those (antigens) found commonly in clinical infections.
Body Fluids
;
Cell Wall*
;
Electrophoresis, Polyacrylamide Gel
;
Humans
;
Iron*
;
Metabolism
;
Oxygen*
;
Parents
;
Staphylococcus aureus*
;
Staphylococcus*
;
Streptonigrin
7.Effect of Iron-Uptake System on the Growth of Staphylococcus aureus according to the Iron Concentration and Oxygen Tension.
Korean Journal of Infectious Diseases 2001;33(3):214-218
BACKGROUND: We previously reported that activity of iron-uptake systems (IUS) influenced on the growth of Staphylococcus aureus in body fluids which are relatively iron-restrictive conditions. Iron and oxygen are closely related each other in several microbial metabolism. In the present study, we tried to investigate the effect of IUS on the growth of S. aureus according to the iron concentration and oxygen tension. METHODS: SR-1 strain, whose IUS are defective, was isolated from the standard strain, ATCC 6538. These two strains were cultured under the aerobic, microaerobic and anaerobic condition in the iron-sufficient BHI and iron-depleted BHI, respectively. Bacterial growth was measured by optical density. RESULTS: Growth of both strains was inhibited in the iron-depleted BHI. Growth of parental strain was more active in the iron-sufficient BHI as well as in the ion-depleted BHI than that of SR-1 strain. Growth of both strains was more active under the aerobic condition than under the microaerobic or anaerobic condition. In the iron-depleted BHI, parental strain showed a striking difference of growth according to the oxygen tension. In the iron-depleted BHI, growth of SR-1 strain was markedly inhibited regardless of oxygen tension. CONCLUSION: IUS influenced more on the growth of S. aureus in the iron-depleted environments than in the iron-sufficient environments, and under the aerobic condition than under the microaerobic or anaerobic condition in the iron-depleted environments. These results indicated the possibility that oxygen as well as iron regulate activity and expression of IUS.
Body Fluids
;
Humans
;
Iron*
;
Metabolism
;
Oxygen*
;
Parents
;
Staphylococcus aureus*
;
Staphylococcus*
;
Strikes, Employee
8.Comparative study on the aflatoxin B1 degradation ability of rumen fluid from Holstein steers and Korean native goats.
Santi Devi UPADHAYA ; Ha Guyn SUNG ; Chan Hee LEE ; Se Young LEE ; Sun Woo KIM ; Kyung Jin CHO ; Jong K HA
Journal of Veterinary Science 2009;10(1):29-34
The aflatoxin B1 degrading abilities of two different ruminants were compared in this study. One set of experiments evaluated the aflatoxin B1 degradation ability of different rumen fluid donors (steers vs. goats) as well as the rumen fluid filtration method (cheese cloth filtered vs. 0.45 microm Millipore) in a 2 x 2 factorial arrangement. Additional studies examined aflatoxin B1 degradation by collecting rumen fluid at different times (0, 3, 6, 9 and 12 h) after feeding. Cannulated Holstein steers (740 +/- 10 kg bw) and Korean native goats (26 +/- 3 kg bw) were fed a 60% timothy and 40% commercial diet with free access to water. Rumen fluid from Korean native goats demonstrated higher (p < 0.01) aflatoxin B1 degradability than Holstein steers. However, filtration method had no significant influence on degradability. In addition, aflatoxin degradation did not depend upon rumen fluid collection time after feeding, as no significant differences were observed. Finally, a comparison of two types of diet high in roughage found aflatoxin degradability in goats was higher with timothy hay opposed to rice straw, although individual variation existed. Thus, our findings showed the aflatoxin degradability is comparatively higher in goats compared to steers.
Aflatoxin B1/*chemistry/*metabolism
;
Animals
;
Body Fluids/*chemistry/metabolism
;
Cattle/*physiology
;
Goats/*physiology
;
Korea
;
Male
;
Rumen/*metabolism
9.The corrosion of pure iron in five different mediums.
Li XU ; Shengfa ZHU ; Nan HUANG ; Xinchang LI ; Yu ZHANG
Journal of Biomedical Engineering 2009;26(4):783-786
The sectional test was adopted in this study to investigate the corrosion of pure iron in 0.15 mol/L NaCl solution, Ringer solution, PBS(-) solution, SBF solution and M199 cell culture medium at three different times. The result shows that different mediums have different corrosion effects on pure iron. The arrangement according to the medium's corrosion ability from the strongest to weakest is 0.15 mol/L NaCl solution (Ringer solution), PBS(-) solution, SBF solution and M199 cell culture medium. The results of scanning electron microscopy and energy dispersive X-ray spectrum analyses show that the addition of HPO4(2-), H2POC4-, Ca2+, Mg2+, SO4(2-) and the organic component can inhibit the corrosion to some degree.
Biocompatible Materials
;
chemistry
;
Body Fluids
;
metabolism
;
Corrosion
;
Iron
;
chemistry
;
Isotonic Solutions
;
chemistry
;
Materials Testing
;
Sodium Chloride
;
chemistry
10.Construction of an Analysis Model of mRNA Markers in Menstrual Blood Based on Naïve Bayes and Multivariate Logistic Regression Methods.
Qi ZHANG ; He-Miao ZHAO ; Kang YANG ; Jing CHEN ; Rui-Qin YANG ; Chong WANG
Journal of Forensic Medicine 2023;39(5):447-451
OBJECTIVES:
To establish the menstrual blood identification model based on Naïve Bayes and multivariate logistic regression methods by using specific mRNA markers in menstrual blood detection technology combined with statistical methods, and to quantitatively distinguish menstrual blood from other body fluids.
METHODS:
Body fluids including 86 menstrual blood, 48 peripheral blood, 48 vaginal secretions, 24 semen and 24 saliva samples were collected. RNA of the samples was extracted and cDNA was obtained by reverse transcription. Five menstrual blood-specific markers including members of the matrix metalloproteinase (MMP) family MMP3, MMP7, MMP11, progestogens associated endometrial protein (PAEP) and stanniocalcin-1 (STC1) were amplified and analyzed by electrophoresis. The results were analyzed by Naïve Bayes and multivariate logistic regression.
RESULTS:
The accuracy of the classification model constructed was 88.37% by Naïve Bayes and 91.86% by multivariate logistic regression. In non-menstrual blood samples, the distinguishing accuracy of peripheral blood, saliva and semen was generally higher than 90%, while the distinguishing accuracy of vaginal secretions was lower, which were 16.67% and 33.33%, respectively.
CONCLUSIONS
The mRNA detection technology combined with statistical methods can be used to establish a classification and discrimination model for menstrual blood, which can distignuish the menstrual blood and other body fluids, and quantitative description of analysis results, which has a certain application value in body fluid stain identification.
Female
;
Humans
;
RNA, Messenger/metabolism*
;
Bayes Theorem
;
Logistic Models
;
Menstruation
;
Body Fluids
;
Saliva
;
Semen
;
Forensic Genetics/methods*