1.Application of mathematical algorithm for calculating changes of optic and retina function in mice model of glaucoma
Jing-Kun, LIU ; Lin-Bang, WANG ; Bing, WANG ; Ya-Ling, SHENG ; Jing, HE ; Fen-Ge, MENG
International Eye Science 2016;16(11):2014-2018
AIM:To be one of the primary cause injury to multiple sites of ocular of glaucoma which affects over 70 million people worldwide. We applied data mining techniques, linear and the matrix operations, efficiently calculated the network and estimated the possible function of the“node” genes of the retina and optic of glaucoma, in order to provide new thought and method on the pathogenesis of glaucoma.
METHODS: The data in this study is from Gene Expression Omnibus ( GEO ) which belong to Nation Center for Biotechnology Information ( NCBI) , the quality of the raw data CEL files was processed and analyzed by the Expression software which belong to Affymetrix Inc. , Santa Clare, CA, USA. Significant analysis method ( SAM) which base on the T test was used to identified the significant genes. Based on GRNInfer and Gvedit soft we set up gene networks of optic and retina of mice and further more enriched analysis which based on DAVID and MAS3. 0 online software were processed.
RESULTS:The analysis between the group of the optic nerve heads and retinas in different stage of glaucoma showed that the amount of significant different expressed genes in the optic never head group increased significantly comparing with the group of retina in the early stage of glaucoma, the analysis of the genes network construction show that:the node genes of optic nerve heads included Unc13c、Kif5a、TRPM1、PANX; and the node genes of retina include POU4F1, NEFL, BC03870, CALB2. Metabolic pathways enrichment analysis which based on MAS3. 0 online platform show that there was mainly the amyotrophic lateral sclerosis, tyrosine metabolism, melanogenesis, Nitrogen metabolism, Gap junction, Leukocyte transendothelial migration metabolism pathway enriched out in optic nerve head; and there was mainly amyotrophic lateral sclerosis, neurodegenerative disorders, prostate cancer, leukocyte transendothelial migration metabolism pathway enriched out in retina.
CONCLUSION:By understanding bioinformatics result, it seems optic were more sensitive than the retina to high intraocular pressure, and weather high expression of TYrp1 gene can be as a sensitive diagnostic item require more evidence back up. Functional enrich analysis of node gene showed that cytoskeleton reconstructed, molecular motor and nutrients transport function improve in optic; and in retina, the most prominent finding in retina was enrichment function modules were focus on regeneration, repairing and differentiation of cells, which remind that we should reinforce research on reparation of retina of primary glaucoma. Metabolic pathways enrichment analysis show that inflammatory response plays prominent place in optic and retina of primary glaucoma, because of the optic narrow and crowed anatomic shape, nutrient metabolism and substances transfer enrichment modules play an important role in optics of primary glaucoma.
2.Characteristics of bax, bcl-2 and p53 gene expression in children and fetal skin at different developmental stages
Wei CHEN ; Xiaobing FU ; Shili GE ; Gang ZHOU ; Duyin JIANG ; Tongzhu SUN ; Bing HAN ; Zhiyong SHENG
Chinese Journal of Pathophysiology 1986;0(01):-
AIM: To investigate gene expression of bax, bcl-2 and p53 in fetal skin at different gestational ages and children skin in order to explore their potentially biological significance. METHODS: Apoptosis in skin specimens was determined by terminal deoxynucleotidy transferase mediated dUTP-biotin nick-end labeling technique (TUNEL). Gene expressions of bax, bcl-2 and p53 in skin at different developmental stages was examined with reverse transcription-polymerase chain reaction (RT-PCR). RESULTS: Along with fetal growth and development, the incidence rate of apoptosis was increased progressively in skin. In skin from early gestational fetus, bcl-2 was strongly expressed. This gene expression was progressively decreased with increment in gestational age. In children skin, the mRNA content of this gene was significantly reduced compared with fetal skin (P
3.Application of IL-6, ESR and CRP in the diagnosis and treatment of abdominal aortic aneurysm
Hongbo CI ; Qingbo FANG ; Jianping YANG ; Feng ZHU ; Sheng GUAN ; Bing ZHU ; Xiaohu GE
International Journal of Surgery 2017;44(3):175-178
Objective Study of interleukin-6 (IL-6),erythrocyte sedimen-tation rate (ESR),C-reactive protein (CRP) in diagnosis and treatment of abdominal aortic aneurysm.Methods Between June 2014 and May 2016,we detected of abdominal aortic aneurysm in 62 cases that were diagnosed and treated at Department of Vascular Surgery,People's Hospital of Xinjiang Uygur Autonomous Region including interleukin-6,erythrocyte sediinen-tation rate,and C-reactive protein.Results There was no significant difference between interleukin-6,erythrocyte sedimen-tation rate and C-reactive protein in the patients with and without complications.The correlation analysis results of interleukin-6,erythrocyte sedimen-tation and C-reactive protein were confirmed to have positive correlation respectively.Compared with non special types of rupture (48.0 ± 34.2) pg/ml,interleukin-6 was higher in special types of rupture (187.6 ± 110.4) pg/ml.Conclusions Preoperative detection of interleukin-6,erythrocyte sedimen-tation and C-reactive protein,combined with patient history and imaging examination were help for predict cause,choose better surgical approach and predict the prognosis in certain guiding significance.
5.Efficacy and safety of oxycodone hydrochloride for postoperative analgesia in spin surgery patients
Yun-Lin GE ; Yi-Sheng LU ; Chu-Di FU ; Bing PAN
The Chinese Journal of Clinical Pharmacology 2016;32(5):412-414
Objective To evaluate the efficacy and safety of oxycodone hydrochloride for postoperative analgesia in patients who received spin surgery.Methods Sixty -nine patients treated with spin surgery were included in this study and randomly divided into treatment group ( n=34 ) and control group ( n=35).Half an hour before the end of operation ,the patients of the two group were given oxycodone hydrochloride and morphine 0.07 mg · kg-1 , respectively.After extubation , patient -controlled analgesia pump was given with the background dosage of 0.5 mg · h -1 and one time push 1 mg of oxycodone hydrochloride or morphine.The mean arterial pressure ( MAP) , and heart rate were com-pared in the time points of entering the operation room ( T0 ) ,tracheal in-tubation ( T1 ) , 5 min after tracheal intubation ( T2 ) , and 15 min after tra-cheal intubation(T3) between the two groups.The recovery time, extu-bation time ,visual analogue scale ( VAS) ,observer assessment of sedation ( OAA/S ) score and safety were compared between the two groups . Results The MAP and heart rate were not statistically different between the two groups and among the time points ( P>0.05 ).The recovery time , extubation time , VAS, OAA/S score in treatment group were significant lower than those of control group( P<0.05 ).The adverse drug reaction rates were 17.14%and 8.82% in the control group and treatment group respectively with statistical difference ( P<0.05 ).Conclusion Compared with morphine , oxycodone hydrochloride is more effective and safe for postoperative analgesia in patients who received spin surgery.
6.Development of gene microarray in screening differently expressed genes in keloid and normal-control skin.
Wei CHEN ; Xiao-bing FU ; Shi-li GE ; Xiao-qing SUN ; Gang ZHOU ; Zhi-li ZHAO ; Zhi-yong SHENG
Chinese Medical Journal 2004;117(6):877-881
BACKGROUNDKeloid is an intricate lesion that is probably regulated by many genes. In this study, the authors used the technique of complementary DNA (cDNA) microarray to analyse abnormal gene expression in keloids and normal control skins.
METHODSThe polymerase chain reaction (PCR) products of 8400 genes were spotted in an array on chemical-material-coated-glass plates. The DNAs were fixed on the glass plates. The total RNAs were isolated from freshly excised human keloid and normal control skins, and the mRNAs were then purified. The mRNA from both keloid and normal control skins were reversely transcribed to cDNAs, with the incorporation of fluorescent dUTP, for preparing the hybridisation probes. The mixed probes were then hybridised to the cDNA microarray. After thorough washing, the cDNA microarray was scanned for differing fluorescent signals from two types of tissues. Gene expression of tissue growth factor-beta1 (TGF-beta1) and of c-myc was detected with both RT-PCR and Northern blot hybridisation to confirm the effectiveness of cDNA microarray.
RESULTSAmong the 8400 human genes, 402 were detected with different expression levels between keloid and normal control skins. Two hundred and fifty genes, including TGF-beta1 and c-myc, were up-regulated and 152 genes were down-regulated. Higher expressions of TGF-beta1 and c-myc in keloid were also revealed using RT-PCR and Northern blot methods.
CONCLUSIONcDNA microarray analysis provides a powerful tool for investigating differential gene expression in keloid and normal control skins. Keloid is a complicated lesion with many genes involved.
DNA, Complementary ; analysis ; Humans ; Keloid ; genetics ; Oligonucleotide Array Sequence Analysis ; methods ; Polymerase Chain Reaction ; RNA, Messenger ; analysis ; Skin
7.Effect of acupuncture in intervening heroin-induced brain damage via regulating ubiquitin-proteasome pathway
Li-Da ZHANG ; Jiang-Peng CAO ; Xing-Hui CAI ; Sheng-Bing WU ; Xiao-Rong HOU ; Yong-Long GAO ; Rong-Jun ZHANG ; Xiao-Ge SONG ; Jue HONG
Journal of Acupuncture and Tuina Science 2018;16(2):80-88
Objective:To observe the effect of acupuncture in regulating ubiquitin-proteasome pathway (UPP),and discuss the action of acupuncture in intervening heroin-induced brain damage.Methods:Thirty male Sprague-Dawley (SD) rats were divided into a control group,a model group and an acupuncture group by using the random number table.Rats in the model and acupuncture groups received intramuscular heroin injection for successive 8 d at a progressively increased dose.Afterwards,the injection was suspended for 5 d for withdrawal.The heroin relapse rat model was established by repeating the drug addiction and withdrawal process for 3 times.The control group followed the step of the model establishment,but was given intramuscular injection of normal saline at the stage of addiction and no intervention at the stage of withdrawal;the model group was given intramuscular heroin injection at a progressively increased dose at the addiction stage and no intervention at the withdrawal stage;the acupuncture group was dealt in the same way as the model group at the addiction stage,but received acupuncture at Baihui (GV 20) and Dazhui (GV 14) at the withdrawal stage,with the needles retained for 30 min each time,1 session a day,for successive 5 d.On the 39th day,brain tissues were extracted from the hippocampus and ventral tegmental area (VTA) of the three groups of rats.The apoptosis of brain nerve cells was detected by using terminal deoxynucleotidyl transferase-mediated nick and labeling (TUNEL).The mRNA and protein expressions of ubiquitin (Ub),ubiquitin protein ligase (E3) and 26S were examined by immunohistochemistry and quantitative real-time polymerase chain reaction (RT-qPCR).Results:Compared with the model group,rat's hippocampus and VTA in the acupuncture group showed significantly fewer cells positively stained by TUNEL staining (P<0.01),and its mRNA and protein expressions of Ub,E3,26S were significantly lower (P<0.01).Conclusion:Reducing nerve cell apoptosis and regulating the mRNA and protein expressions of Ub,E3 and 26S in rat's hippocampus and VTA are possibly one of the action mechanisms of acupuncture in intervening heroin-induced brain damage.
8.Association of HLA-B*1502 and *1511 allele with antiepileptic drug-induced Stevens-Johnson syndrome in central China.
Dan SUN ; Chun-hua YU ; Zhi-sheng LIU ; Xue-lian HE ; Jia-sheng HU ; Ge-fei WU ; Bing MAO ; Shu-hua WU ; Hui-hui XIANG
Journal of Huazhong University of Science and Technology (Medical Sciences) 2014;34(1):146-150
Previous studies have demonstrated a strong association between carbamazepine (CBZ)-induced Stevens-Johnson syndrome (SJS) and HLA-B*1502 in Han Chinese. Here, we extended the study of HLA-B*1502 susceptibility to two different antiepileptic drugs, oxcarbazepine (OXC) and phenobarbital (PB). In addition, we genotyped HLA-B*1511 in a case of CBZ-induced SJS with genotype negative for HLA-B*1502. The presence of HLA-B*1502 was determined using polymerase chain reaction with sequence-specific primers (PCR-SSP). Moreover, we genotyped HLA-B*1502 in 17 cases of antiepileptic drugs (AEDs)-induced cutaneous adverse drug reactions (cADRs), in comparison with AEDs-tolerant (n=32) and normal controls (n=38) in the central region of China. The data showed that HLA-B*1502 was positive in 5 of 6 cases of AEDs-induced SJS (4 CBZ, 1 OXC and 1 PB), which was significantly more frequent than AEDs-tolerant (2/32, 18 CBZ, 6 PB and 8 OXC) and normal controls (3/38). Compared with AEDs-tolerant and normal controls, the OR for patients carrying the HLA-B*1502 with AEDs-induced SJS was 6.25 (95% CI: 1.06-36.74) and 4.86 (95% CI: 1.01-23.47). The sensitivity and specificity of HLA-B*1502 for prediction of AEDs-induced SJS were 71.4%. The sensitivity and specificity of HLA-B*1502 for prediction of CBZ-induced SJS were 60% and 94%. HLA-B*1502 was not found in 11 children with maculopapular exanthema (MPE) (n=9) and hypersensitivity syndrome (HSS) (n=2). However, we also found one case of CBZ-induced SJS who was negative for HLA-B*1502 but carried HLA-B*1511. It was suggested that the association between the CBZ-induced SJS and HLA-B*1502 allele in Han Chinese children can extend to other aromatic AEDs including OXC and PB related SJS. HLA-B*1511 may be a risk factor for some patients with CBZ-induced SJS negative for HLA-B*1502.
Adolescent
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Alleles
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Anticonvulsants
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adverse effects
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Asian Continental Ancestry Group
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genetics
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Carbamazepine
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adverse effects
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analogs & derivatives
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Child
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Child, Preschool
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China
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Female
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Genetic Predisposition to Disease
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ethnology
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genetics
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Genotype
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HLA-B15 Antigen
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genetics
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Humans
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Infant
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Male
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Phenobarbital
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adverse effects
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Polymerase Chain Reaction
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Stevens-Johnson Syndrome
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ethnology
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etiology
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genetics
9.Anxiety and its effect factors in children with epilepsy
Ge-Fei WU ; Zhi-Sheng LIU ; Jia-Sheng HU ; Cai-Ying HE ; Shu-Hua WU ; Bing MAO ; Dan SUN ; Fang-Lin WANG
Chinese Journal of Neuromedicine 2010;09(11):1142-1146
Objective To investigate the anxiety state of children with epilepsy and explore the influence of patients' depression, personality and guardians' anxiety, depression and personality on the patients' anxiety state. Methods Ninety-five epileptic children (epilepsy group) and their guardians were assessed to rate their anxiety, depression and personality with Social Anxiety Scale for Children (SASC), Depression Self Rating Scale for Children (DSRS), Self-Rating Anxiety Scale (SAS), Beck Depression Inventory (BDI) and Eysenck Personality Questionnaire of children and adult (EPQ). One hundred and eighteen children recovered from upper respiratory infection were included in our study as control group. Results The SASC scores in the epilepsy group were higher than those in the control group (P<0.05); in the epilepsy group, the SASC scores of girls were higher than those of boys (P<0.05);the anxiety level of patients of all ages increased with ages; SASC scores in epilepsy group aged 13-15 years were higher than that of control group (P<0.05). The SASC scores were positively correlated to the DSRS scores and the scores of N and P dimension of EPQ, and negatively correlated to scores of E dimension of EPQ in the epileptic group (P<0.05). The SASC scores of patients were positively correlated to the SAS scores of guardians and negatively to scores of E dimension of EPQ in guardians (P<0.05). No correlation between SASC scores of patients and scores of guardians' BDI and P, N dimensions of EPQ was noted (P>0.05). Under the condition that educational level of guardians were the same, no significant differences in the SASC scores were noted between epilepsy group and control group (P>0.05). Under the condition that educational level of guardians were different, no significant differences in the SASC scores were noted in the epilepsy group (P>0.05). Under the condition that the occupation of guardians were the same, no significant differences in the SASC scores were noted between epilepsy group and control group (P>0.05). Although the guardians' occupation was different (workers, farmers or administration staff), no significant differences in their children's SASC scores were noted in the epilepsy group (P>0.05). The epileptic seizure type (partial or generalized seizure), neuroimaging changes and course of the disease had no significant influence on the patients' SASC scores in the epilepsy group (P>0.05). Conclusion Anxiety level of children with epilepsy is higher than that of the healthy ones, which is related to gender,and age of children, anxiety or depression level and some personality of themselves and guardians, but not correlated to epileptic seizure type, neuroimaging changes, course of the disease, guardians' educational level and occupation.
10.Analysis of differentially expressed genes in fetal skin of scarless and scar-forming periods of gestational rats.
Wei CHEN ; Xiao-Bing FU ; Shi-Li GE ; Tong-Zhu SUN ; Zhi-Yong SHENG
Chinese Journal of Traumatology 2006;9(2):94-99
OBJECTIVETo study the differences of gene expression between earlier gestational skin and later gestational skin of rats with the aids of single primer amplification (SPA) and high-density oligonucleotide DNA array to understand the molecular mechanism of scarless healing.
METHODSTotal RNAs were isolated from fetal rat skin of the scarless (E15) and scar-forming (E18) periods of gestation (term = 21.5 days). The RNAs from earlier gestational skin (EGS) and later gestational skin (LGS) were both reversely transcribed to cDNAs, then labeled with the incorporation of fluorescent dCTP for preparing the hybridization probes by SPA method. The mixed probes were then hybridized to the oligonucleotide DNA arrays which contained 5,705 probes representing 5,705 rat genes. After highly stringent washing, these DNA arrays were scanned for fluorescent signals to display the differentially expressed genes between the 2 groups of skin.
RESULTSAmong 5,705 rat genes, there were 53 genes (0.93 percent) with differentially expressed levels between EGS and LGS groups, 27 genes, including fibroblast growth factor 2 (FGF2) and follistatin were up-regulated (0.47%) and 26 genes were down-regulated (0.46%) in fetal skin during scarless period versus scar-forming period. Higher expressions of FGF2 and follistatin in EGS than those in LGS were also revealed by RT-PCR method.
CONCLUSIONSHigh-density oligonucleotide DNA array provided a powerful tool for investigating differential gene expression in earlier and later gestational fetal skins. This technology validates that the mechanism of fetal scarless healing is very complicate and the change of many gene expressions is associated with fetal scarless healing.
Animals ; Cicatrix ; embryology ; genetics ; Epidermis ; embryology ; metabolism ; Fetus ; embryology ; Fibroblast Growth Factor 2 ; analysis ; Follistatin ; analysis ; Gene Amplification ; Gene Expression ; Gene Expression Regulation, Developmental ; Gestational Age ; Oligonucleotide Array Sequence Analysis ; RNA, Messenger ; isolation & purification ; metabolism ; Rats ; Skin ; metabolism ; Transforming Growth Factor beta ; analysis ; Transforming Growth Factor beta1 ; Wound Healing ; genetics