2.Squamous Cell Carcinoma and Lymphoma of the Oropharynx: Differentiation Using a Radiomics Approach
Sohi BAE ; Yoon Seong CHOI ; Beomseok SOHN ; Sung Soo AHN ; Seung-Koo LEE ; Jaemoon YANG ; Jinna KIM
Yonsei Medical Journal 2020;61(10):895-900
The purpose of this study was to evaluate the diagnostic performance of magnetic resonance (MR) radiomics-based machine learning algorithms in differentiating squamous cell carcinoma (SCC) from lymphoma in the oropharynx. MR images from 87 patients with oropharyngeal SCC (n=68) and lymphoma (n=19) were reviewed retrospectively. Tumors were semi-automatically segmented on contrast-enhanced T1-weighted images registered to T2-weighted images, and radiomic features (n=202) were extracted from contrast-enhanced T1- and T2-weighted images. The radiomics classifier was built using elastic-net regularized generalized linear model analyses with nested five-fold cross-validation. The diagnostic abilities of the radiomics classifier and visual assessment by two head and neck radiologists were evaluated using receiver operating characteristic (ROC) analyses for distinguishing SCC from lymphoma. Nineteen radiomics features were selected at least twice during the five-fold cross-validation. The mean area under the ROC curve (AUC) of the radiomics classifier was 0.750 [95% confidence interval (CI), 0.613–0.887], with a sensitivity of 84.2%, specificity of 60.3%, and an accuracy of 65.5%. Two human readers yielded AUCs of 0.613 (95% CI, 0.467–0.759) and 0.663 (95% CI, 0.531–0.795), respectively. The radiomics-based machine learning model can be useful for differentiating SCC from lymphoma of the oropharynx.
3.Shear wave velocity measurements using acoustic radiation force impulse in young children with normal kidneys versus hydronephrotic kidneys.
Beomseok SOHN ; Myung Joon KIM ; Sang Won HAN ; Young Jae IM ; Mi Jung LEE
Ultrasonography 2014;33(2):116-121
PURPOSE: To measure shear wave velocities (SWVs) by acoustic radiation force impulse (ARFI) ultrasound elastography in normal kidneys and in hydronephrotic kidneys in young children and to compare SWVs between the hydronephrosis grades. METHODS: This study was approved by an institutional review board, and informed consent was obtained from the parents of all the children included. Children under the age of 24 months were prospectively enrolled. Hydronephrosis grade was evaluated on ultrasonography, and three valid ARFI measurements were attempted using a high-frequency transducer for both kidneys. Hydronephrosis was graded from 0 to 4, and high-grade hydronephrosis was defined as grades 3 and 4. RESULTS: Fifty-one children underwent ARFI measurements, and three valid measurements for both kidneys were obtained in 96% (49/51) of the patients. Nineteen children (38.8%) had no hydronephrosis. Twenty-three children (46.9%) had unilateral hydronephrosis, and seven children (14.3%) had bilateral hydronephrosis. Seven children had ureteropelvic junction obstruction (UPJO). Median SWVs in kidneys with high-grade hydronephrosis (2.02 m/sec) were higher than those in normal kidneys (1.75 m/sec; P=0.027). However, the presence of UPJO did not influence the median SWVs in hydronephrotic kidneys (P=0.362). CONCLUSION: Obtaining ARFI measurements of the kidney is feasible in young children with median SWVs of 1.75 m/sec in normal kidneys. Median SWVs increased in high-grade hydronephrotic kidneys but were not different between hydronephrotic kidneys with and without UPJO.
Acoustics*
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Child*
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Elasticity Imaging Techniques
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Ethics Committees, Research
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Humans
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Hydronephrosis
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Informed Consent
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Kidney*
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Parents
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Prospective Studies
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Transducers
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Ultrasonography
4.18F-FDG PET/CT Parameters Enhance MRI Radiomicsfor Predicting Human Papilloma Virus Status in Oropharyngeal Squamous Cell Carcinoma
Kwan Hyeong JO ; Jinna KIM ; Hojin CHO ; Won Jun KANG ; Seung-Koo LEE ; Beomseok SOHN
Yonsei Medical Journal 2023;64(12):738-744
Purpose:
Predicting human papillomavirus (HPV) status is critical in oropharyngeal squamous cell carcinoma (OPSCC) radiomics. In this study, we developed a model for HPV status prediction using magnetic resonance imaging (MRI) radiomics and18F-fluorodeoxyglucose ( 18F-FDG) positron emission tomography (PET)/computed tomography (CT) parameters in patients withOPSCC.
Materials and Methods:
Patients with OPSCC who underwent 18F-FDG PET/CT and contrast-enhanced MRI before treatment between January 2012 and February 2020 were enrolled. Training and test sets (3:2) were randomly selected. 18F-FDG PET/CT parameters and MRI radiomics feature were extracted. We developed three light-gradient boosting machine prediction models using the training set: Model 1, MRI radiomics features; Model 2, 18F-FDG PET/CT parameters; and Model 3, combination of MRI radiomics features and 18F-FDG PET/CT parameters. Area under the receiver operating characteristic curve (AUROC) values were used to analyze the performance of the models in predicting HPV status in the test set.
Results:
A total of 126 patients (118 male and 8 female; mean age: 60 years) were included. Of these, 103 patients (81.7%) were HPV-positive, and 23 patients (18.3%) were HPV-negative. AUROC values in the test set were 0.762 [95% confidence interval (CI), 0.564–0.959], 0.638 (95% CI, 0.404–0.871), and 0.823 (95% CI, 0.668–0.978) for Models 1, 2, and 3, respectively. The net reclassification improvement of Model 3, compared with that of Model 1, in the test set was 0.119.
Conclusion
When combined with an MRI radiomics model, 18F-FDG PET/CT exhibits incremental value in predicting HPV status in patients with OPSCC.
5.The influence of pituitary volume on the growth response in growth hormone-treated children with growth hormone deficiency or idiopathic short stature
Jun Suk OH ; Beomseok SOHN ; Youngha CHOI ; Kyungchul SONG ; Junghwan SUH ; Ahreum KWON ; Ho-Seong KIM
Annals of Pediatric Endocrinology & Metabolism 2024;29(2):95-101
Purpose:
Magnetic resonance imaging (MRI) can be used for assessing the morphology of the pituitary gland in children with short stature. The purposes of this study were: (1) to determine if pituitary volume (PV) can distinguish patients with growth hormone (GH) deficiency from those with idiopathic short stature (ISS), (2) to validate an association between PV and severity of GH deficiency, and (3) to compare PV between good and poor response groups in children with GH deficiency or ISS after 1 year of treatment.
Methods:
Data were collected from the medical records of 152 children with GH deficiency or ISS who underwent GH stimulation test, sella MRI, and GH treatment for at least 1 year. Estimated PVs were calculated using the formula of an ellipsoid. We compared the PVs in patients with GH deficiency with those of patients with ISS. In addition, we assessed the association between PV and severity of GH deficiency, and we assessed growth response after treatment.
Results:
No difference was observed in PV between patients with GH deficiency and those with ISS. The severity of the GH deficiency seemed to be associated with PV (P=0.082), and the height of the pituitary gland was associated with severity of GH deficiency (P<0.005). The PV in the good response group was less than that of the poor response group in patients with GH deficiency (P<0.005), and PV showed no association with responsiveness to GH treatment in patients with ISS (P=0.073).
Conclusion
The measurement of PV cannot be used for differential diagnosis between GH deficiency and ISS. In patients with GH deficiency, PV tended to be smaller as the severity of GH deficiency increased, but the difference was not significant. PV may be a good response predictor for GH treatment. Further studies, including a radiomics-based approach, will be helpful in elucidating the clinical implications of pituitary morphology in patients with short stature.
6.A Novel Landmark-based Semi-supervised Deep Learning Method for Cerebral Aneurysm Detection Using TOF-MRA
Hyeonsik YANG ; Jieun PARK ; Eunyoung Regina KIM ; Minho LEE ; ZunHyan RIEU ; Donghyeon KIM ; Beomseok SOHN ; Kijeong LEE
Journal of the Korean Neurological Association 2024;42(4):322-330
Background:
Time-of-flight (TOF) magnetic resonance angiography (MRA) is widely used to identify aneurysm in human brain. Various deep learning models have been developed to help TOF-MRA reading in the field. The performance of those TOF-MRA analysis tools, however, faces several limitations in cerebral aneurysm detection. These challenges primarily come from the fact that cerebral aneurysms occupy less than 0.1% of the total TOF-MRA voxel size. This study aims to improve the efficiency of cerebral aneurysm detection by developing a landmark-based semi-supervised deep learning method, a technology that automatically generates landmark boxes in areas with a high probability of cerebral aneurysm occurrence.
Methods:
We used data from a total of 500 aneurysm-positive and 50 aneurysm-negative subjects. The aneurysm detection model was developed using clustering and a dilated residual network.
Results:
When the number of landmarks was ten and their size was 36 mm3, the best performance was achieved in our experiment. Although landmark occupies a small portion of the entire image, up to 98.2% of landmarks were cerebral aneurysms. The sensitivity of the model for cerebral aneurysm detection was 83.0%, with a false positive rate of 3.4%.
Conclusions
This study developed a deep learning model using TOF-MRA image. This model generates the most suitable landmarks for each individual, excluding unnecessary areas for cerebral aneurysm detection, which makes it possible to focus on areas with a high probability of occurrence. This model is expected to enhance the efficiency and accuracy of cerebral aneurysm detection in the field.
8.A Novel Landmark-based Semi-supervised Deep Learning Method for Cerebral Aneurysm Detection Using TOF-MRA
Hyeonsik YANG ; Jieun PARK ; Eunyoung Regina KIM ; Minho LEE ; ZunHyan RIEU ; Donghyeon KIM ; Beomseok SOHN ; Kijeong LEE
Journal of the Korean Neurological Association 2024;42(4):322-330
Background:
Time-of-flight (TOF) magnetic resonance angiography (MRA) is widely used to identify aneurysm in human brain. Various deep learning models have been developed to help TOF-MRA reading in the field. The performance of those TOF-MRA analysis tools, however, faces several limitations in cerebral aneurysm detection. These challenges primarily come from the fact that cerebral aneurysms occupy less than 0.1% of the total TOF-MRA voxel size. This study aims to improve the efficiency of cerebral aneurysm detection by developing a landmark-based semi-supervised deep learning method, a technology that automatically generates landmark boxes in areas with a high probability of cerebral aneurysm occurrence.
Methods:
We used data from a total of 500 aneurysm-positive and 50 aneurysm-negative subjects. The aneurysm detection model was developed using clustering and a dilated residual network.
Results:
When the number of landmarks was ten and their size was 36 mm3, the best performance was achieved in our experiment. Although landmark occupies a small portion of the entire image, up to 98.2% of landmarks were cerebral aneurysms. The sensitivity of the model for cerebral aneurysm detection was 83.0%, with a false positive rate of 3.4%.
Conclusions
This study developed a deep learning model using TOF-MRA image. This model generates the most suitable landmarks for each individual, excluding unnecessary areas for cerebral aneurysm detection, which makes it possible to focus on areas with a high probability of occurrence. This model is expected to enhance the efficiency and accuracy of cerebral aneurysm detection in the field.
10.A Novel Landmark-based Semi-supervised Deep Learning Method for Cerebral Aneurysm Detection Using TOF-MRA
Hyeonsik YANG ; Jieun PARK ; Eunyoung Regina KIM ; Minho LEE ; ZunHyan RIEU ; Donghyeon KIM ; Beomseok SOHN ; Kijeong LEE
Journal of the Korean Neurological Association 2024;42(4):322-330
Background:
Time-of-flight (TOF) magnetic resonance angiography (MRA) is widely used to identify aneurysm in human brain. Various deep learning models have been developed to help TOF-MRA reading in the field. The performance of those TOF-MRA analysis tools, however, faces several limitations in cerebral aneurysm detection. These challenges primarily come from the fact that cerebral aneurysms occupy less than 0.1% of the total TOF-MRA voxel size. This study aims to improve the efficiency of cerebral aneurysm detection by developing a landmark-based semi-supervised deep learning method, a technology that automatically generates landmark boxes in areas with a high probability of cerebral aneurysm occurrence.
Methods:
We used data from a total of 500 aneurysm-positive and 50 aneurysm-negative subjects. The aneurysm detection model was developed using clustering and a dilated residual network.
Results:
When the number of landmarks was ten and their size was 36 mm3, the best performance was achieved in our experiment. Although landmark occupies a small portion of the entire image, up to 98.2% of landmarks were cerebral aneurysms. The sensitivity of the model for cerebral aneurysm detection was 83.0%, with a false positive rate of 3.4%.
Conclusions
This study developed a deep learning model using TOF-MRA image. This model generates the most suitable landmarks for each individual, excluding unnecessary areas for cerebral aneurysm detection, which makes it possible to focus on areas with a high probability of occurrence. This model is expected to enhance the efficiency and accuracy of cerebral aneurysm detection in the field.