3.Adaptive Evolution of cry Genes in Bacillus thuringiensis:Implications for Their Specificity Determination
Wu JIN-YU ; Zhao FANG-QING ; Bai JIE ; Deng GANG ; Qin SONG ; Bao QI-YU
Genomics, Proteomics & Bioinformatics 2007;5(2):102-110
The cry gene family, produced during the late exponential phase of growth in Bacillus thuringiensis, is a large, still-growing family of homologous genes, in which each gene encodes a protein with strong specific activity against only one or a few insect species. Extensive studies are mostly focusing on the structural and functional relationships of Cry proteins, and have revealed several residues or domains that are important for the target recognition and receptor attachment. In this study,we have employed a maximum likelihood method to detect evidence of adaptive evolution in Cry proteins, and have identified 24 positively selected residues, which are all located in Domain Ⅱ or Ⅲ. Combined with known data from mutagenesis studies, the majority of these residues, at the molecular level, contribute much to the insect specificity determination. We postulate that the potential pressures driving the diversification of Cry proteins may be in an attempt to adapt for the "arm race" between δ-endotoxins and the targeted insects, or to enlarge their target spectra, hence result in the functional divergence. The sites identified to be under positive selection would provide targets for further structural and functional analyses on Cry proteins.
4.Clinical effect of arthroscopy-assisted minimally invasive management of bunion.
Hong-liang LI ; Shu-yuan LI ; Wei QI ; Chun-bao LI ; Feng QU ; Guo QI ; Gang ZHAO ; Yu-jie LIU ; Juan-li ZHU
China Journal of Orthopaedics and Traumatology 2016;29(2):138-141
OBJECTIVETo evaluate the effect of arthroscopy-assisted minimally invasive management of bunion and hallux valgus deformities.
METHODSTotal 50 patients (53 feet) with bunion and hallux valgus deformities were treated under arthroscopy from July 2008 to July 2011, with an average age of 42.3 years old (ranging from 30 to 65 years old) involving 19 left feet, 28 right feet and 3 both feet. The American Orthopedic Foot and Ankle Society (AOFAS) hallux metatarsophalangeal-interphalangeal(MP-IP) Scale Score was used to evaluate the therapeutic effect.
RESULTSThere were no complications such as hallux varus, hallux rigid and nerve or blood vessel injury. Clinically, AOFAS MP-IP Scale Score was increased from 62.19 ± 6.01 preoperatively to 88.26 ± 6.81 postoperatively.
CONCLUSIONArthroscopy-assisted minimally invasive management appears to be a good procedure with advantages of less complication, little trauma and early rehabilitation for bunion and hallux valugs deformities.
Adult ; Aged ; Arthroscopy ; methods ; Female ; Hallux Valgus ; surgery ; Humans ; Middle Aged ; Minimally Invasive Surgical Procedures ; methods
5.Predictive equations and analysis of influence factors of lung ventilation based on a large occupational population in North China.
Yong-hui WU ; Zhong-yi ZHANG ; Bao-qi GANG ; E J LOVE
Chinese Journal of Industrial Hygiene and Occupational Diseases 2005;23(5):321-325
OBJECTIVETo establish suitable predictive equations of lung function for occupational population in North China.
METHODSA total of 5 002 on the job or retired healthy adults from five enterprises in North China with category of mild or moderate work intensity underwent spirometry using a Chest HI-198 spirometer and the procedures recommended by the American Thoracic Society, were a sample.
RESULTSThe data of 3 913 subjects were used. A normal distribution of our data was shown using the normality test and distribution curve. Univariate analysis showed that both age and height were significantly correlated with FVC, FEV(1), FEV(1)/FVC (%) and MMF. Further multiple linear stepwise regression analysis indicated that the levels of FVC, FEV(1), FEV(1)/FVC (%) and MMF were highly influenced by age, height, and weight rather than chest circumference. Thus, only age, height, and weight were introduced into our regression equations. Data from the studied subjects and other source were utilised to examine the validity of the equations and a high accordance rate (> 90%) was obtained. No significant difference (P > 0.05) was found in the predictive values between the simplified equations and equations in which more variables were included.
CONCLUSIONThe studied predictive equations for male non-smokers, female non-smokers, and male smokers were established based on data from a large occupational population. These equations should be more applicable for evaluating lung ventilatory function of occupational populations in North China.
Adolescent ; Adult ; Aged ; Aged, 80 and over ; China ; Female ; Humans ; Male ; Middle Aged ; Occupational Exposure ; Occupations ; Predictive Value of Tests ; Pulmonary Ventilation ; Reference Values ; Regression Analysis ; Reproducibility of Results ; Respiratory Function Tests ; standards ; Vital Capacity ; Young Adult
6.Prospective study of transsphenoidal pituitary surgery: is tumor volume a predictor for the residual tumor?
Resha SHRESTHA ; Lei QI ; Gang BAO ; Mao-de WANG
Chinese Medical Journal 2012;125(14):2444-2448
BACKGROUNDThe presence of residual tumor after surgery for pituitary adenoma may necessitate further treatment. The suprasellar and parasellar extension of the tumor have been widely considered as the predictors for residual tumor. However there is scarcity of studies regarding the preoperative tumor volume and residual tumor. This study was conducted to evaluate if tumor volume could predict the outcome of transsphenoidal pituitary surgery.
METHODSA prospective study was designed and 48 patients who underwent transsphenoidal pituitary surgery within 1 year in the First Affiliated Hospital of Xi'an Jiaotong University were included in this study. The preoperative tumor volume and immediate postoperative tumor volume (within 4 - 7 days) were calculated in the contrast magnetic resonance imaging by using the formula of ellipsoid. All these volumes were divided into three subgroups, i.e. group 1, group 2 and group 3 with preoperative volume of less than 4 cm(3), 4 - 8 cm(3), and more than 8 cm(3) respectively. The parasellar and suprasellar extension of the tumor were also classified by Knosp and modified Hardy's classifications.
RESULTSBaseline characteristics were comparable. The preoperative tumor volume of more than 8 cm(3) (group 3, (12.1 ± 1.1) cm(3)) had increased risk on postoperative tumor residue (P < 0.01) than the other two groups ((2.1 ± 0.3) cm(3) and (6.1 ± 0.3) cm(3) in groups 1 and 2). The mean postoperative volume in group 3 patients ((2.2 ± 0.1) cm(3)) was significantly higher than the other two groups (P < 0.01).
CONCLUSIONPreoperative volume of more than 8 cm(3) can be considered as a predictor for postoperative residual volume.
Adolescent ; Adult ; Aged ; Female ; Humans ; Male ; Middle Aged ; Pituitary Gland ; pathology ; surgery ; Pituitary Neoplasms ; pathology ; surgery ; Prospective Studies ; Treatment Outcome ; Tumor Burden ; physiology ; Young Adult
7.Research of seed quality grading of Glycyrrhiza uralensis.
Qun SUN ; Li-Gang YANG ; Zi-Mian DING ; Jian-Hua WANG ; Bao-Qi SUN
China Journal of Chinese Materia Medica 2008;33(10):1126-1129
OBJECTIVETo formulate the seed quality grading standard of Glycyrrhiza uralensis.
METHODThousand-grain weight, seed moisture, germination rate, purity of G. uralensis seed samples from 24 regions were tested. Through statistical analysis, the key indicator and the reference indicators for seed quality grading were defined.
RESULTGermination percentage was the primary indicator of seed quality grading, thousand-grain weight, cleanliness and moisture content were important reference indicators.
CONCLUSIONThe seed quality of each grade should reach the following requirements: for first grade seeds, germination percentage > or = 85% , purity > or = 92%, thousand-grain weight > or = 13 g, seed moisture < or = 11%; for second grade seeds, germination percentage 75%-85%, purity 83%-92%, thousand-grain weight 11-13 g, seed moisture < or = 11%; for third grade seeds, germination percentage 65%-75%, purity 74%-83%, thousand-grain weight 9-11 g, seed moisture < or = 11%.
Germination ; Glycyrrhiza uralensis ; chemistry ; classification ; physiology ; Quality Control ; Seeds ; chemistry ; classification ; physiology
8.Primers for detecting gene rearrangement in different regions of immunoglobulin heavy chain genes and their application in diagnosis of paraffin-embedded lymphoma tissues.
Zong-Li QI ; Bao ZHANG ; Xi-Qun HAN ; Mei-Gang ZHU ; Tong ZHAO
Journal of Southern Medical University 2008;28(11):1964-1967
OBJECTIVETo analyze and optimize the gene rearrangement primers of different frame regions (FR) of immunoglobulin heavy chain (IgH) genes by bioinformatic methods and explore the application of these primers in the detection of paraffin-embedded lymphoma tissues.
METHODSThree pairs of primers from IgH FR1, FR2 and FR3 regions (P1c, P2A and P31, respectively) were selected as the B cell gene rearrangement primers after comparison of the gene fragments in 44 IgH variable and 6 joining regions. Using one pair of T cell receptor (TCR) gamma primer as the T cell gene rearrangement primer, 101 histopathologically confirmed lymphoproliferative samples including 80 B cell lymphomas, 14 T cell lymphomas, and 7 reactive proliferative lymph nodes were examined by PCR for gene arrangement. The DNAs from DG75 and Jurkat cell lines were used as the positive controls for B and T cell lymphoma, respectively, with those from reactive proliferative lymph nodes as the negative control.
RESULTSThe positivity rates of IgH primers (P1c, P2A and P31) in the 80 B cell lymphomas were 37.5% (30/80), 52.5% (42/80) and 70.0% (56/80), respectively, and only one of the 14 T cell lymphoma cases was positive for the primers, suggesting significant differences in the detection rates of B cell lymphomas by the 3 primers. The detection rate was increased to 83.9% by combining the results by P31 and P2A primers. No positivity was found in the proliferative reaction tissues.
CONCLUSIONPrimers from IgH FR3 region genes are more sensitive than that from the FR1 and FR2 regions in the detection of gene rearrangement in paraffin-embedded lymphoma tissues. The detection rates can be increased by combining the results with the primers for IgH FR3 with that of FR2.
DNA Primers ; Gene Rearrangement, B-Lymphocyte, Heavy Chain ; genetics ; Humans ; Immunoglobulin Heavy Chains ; genetics ; Lymphoma, B-Cell ; diagnosis ; genetics ; pathology ; Lymphoma, Non-Hodgkin ; diagnosis ; genetics ; pathology ; Lymphoma, T-Cell ; diagnosis ; genetics ; pathology ; Male ; Paraffin Embedding
9.Identification of Max binding protein as a novel binding protein of Nck1 and characterization of its role in inhibiting human liver cancer SK-HEP-1 cells.
Qi ZHOU ; Tao HUANG ; Ya-feng WANG ; Kun-sun ZHANG ; Dong CHEN ; Bao-gang PENG
Chinese Medical Journal 2012;125(18):3336-3339
BACKGROUNDThe tendency of tumor cells to disperse throughout the liver is a distinct feature of hepatocellular carcinoma (HCC). Nck family adaptor proteins function to regulate actin cytoskeletal reorganization that leads to cell motility. We previously found that Max binding protein (MNT) was differentially expressed in HCC, and interacted with Nck1 by 2-DE. MNT is a protein member of the Myc/Max/Mad network which plays roles in cell proliferation, differentiation, and death. We investigated the effects of MNT on migration of human liver cancer SK-HEP-1 cells to study the migration regulatory role of MNT in HCC cells.
METHODSInteraction between MNT and Nck1 was further validated in hepatoma cells by GST-pull down assay and immunoprecipitation. siRNAs specific to MNT (MNT siRNA) were used to knockdown MNT expression. Western blotting, transwell assay were used to determine the migration potential of cells.
RESULTSInteraction between MNT and Nck1 was validated in hepatoma cells. MNT knockdown promoted the migration of human liver cancer SK-HEP-1 cells (P < 0.01).
CONCLUSIONThe results suggest that MNT, via interaction with Nck1, inhibits hepatoma cell migration.
Adaptor Proteins, Signal Transducing ; genetics ; metabolism ; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors ; genetics ; metabolism ; Blotting, Western ; Cell Differentiation ; genetics ; physiology ; Cell Line, Tumor ; Cell Movement ; genetics ; physiology ; Humans ; Immunoprecipitation ; Liver Neoplasms ; Oncogene Proteins ; genetics ; metabolism ; Protein Binding ; genetics ; physiology ; Repressor Proteins ; genetics ; metabolism ; Reverse Transcriptase Polymerase Chain Reaction
10.Early Changes in Apparent Diffusion Coefficient for Salivary Glands during Radiotherapy for Nasopharyngeal Carcinoma Associated with Xerostomia.
Qing ZHANG ; Yu Mei WEI ; Yuan Gang QI ; Bao Sheng LI
Korean Journal of Radiology 2018;19(2):328-333
OBJECTIVE: To evaluate the early changes in the apparent diffusion coefficient (ADC) of the salivary glands during radiotherapy (RT) and their association with the degree of xerostomia at 6 months after RT in patients with nasopharyngeal carcinoma (NPC). MATERIALS AND METHODS: We enrolled 26 patients with NPC who underwent RT. Each patient underwent diffusion-weighted MRI of the salivary glands at rest and with gustatory stimulation within 1 week before RT and 2 weeks after the beginning of RT. The ADC at rest (ADCR) and increase and increase rate with stimulation (ADCI, ADCIR) of the submandibular and parotid glands were calculated. The differences in the variables' values between 2 weeks after the beginning of RT and baseline (ΔADCR, ΔADCI, and ΔADCIR) were compared to the degree of xerostomia at 6 months after RT. RESULTS: The ADCR of the submandibular and parotid glands were both significantly higher at 2 weeks after the beginning of RT than found at baseline (both p < 0.01). The ADCI and ADCIR for the parotid glands were both significantly lower at 2 weeks after the beginning of RT than found at baseline (both p < 0.01). ΔADCI and ΔADCIR of the parotid glands were associated with the degree of xerostomia at 6 months after RT (r = −0.61 and −0.72, both p < 0.01). CONCLUSION: The ADCs of the salivary glands change early during RT. The differences in the ADC increase and increase rate of the parotid glands between 2 weeks after the beginning of RT and baseline were associated with the degree of xerostomia at 6 months after RT.
Diffusion*
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Humans
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Magnetic Resonance Imaging
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Parotid Gland
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Quality of Life
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Radiotherapy*
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Salivary Glands*
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Xerostomia*