3.Adaptive Evolution of cry Genes in Bacillus thuringiensis:Implications for Their Specificity Determination
Wu JIN-YU ; Zhao FANG-QING ; Bai JIE ; Deng GANG ; Qin SONG ; Bao QI-YU
Genomics, Proteomics & Bioinformatics 2007;5(2):102-110
The cry gene family, produced during the late exponential phase of growth in Bacillus thuringiensis, is a large, still-growing family of homologous genes, in which each gene encodes a protein with strong specific activity against only one or a few insect species. Extensive studies are mostly focusing on the structural and functional relationships of Cry proteins, and have revealed several residues or domains that are important for the target recognition and receptor attachment. In this study,we have employed a maximum likelihood method to detect evidence of adaptive evolution in Cry proteins, and have identified 24 positively selected residues, which are all located in Domain Ⅱ or Ⅲ. Combined with known data from mutagenesis studies, the majority of these residues, at the molecular level, contribute much to the insect specificity determination. We postulate that the potential pressures driving the diversification of Cry proteins may be in an attempt to adapt for the "arm race" between δ-endotoxins and the targeted insects, or to enlarge their target spectra, hence result in the functional divergence. The sites identified to be under positive selection would provide targets for further structural and functional analyses on Cry proteins.
4.Clinical effect of arthroscopy-assisted minimally invasive management of bunion.
Hong-liang LI ; Shu-yuan LI ; Wei QI ; Chun-bao LI ; Feng QU ; Guo QI ; Gang ZHAO ; Yu-jie LIU ; Juan-li ZHU
China Journal of Orthopaedics and Traumatology 2016;29(2):138-141
OBJECTIVETo evaluate the effect of arthroscopy-assisted minimally invasive management of bunion and hallux valgus deformities.
METHODSTotal 50 patients (53 feet) with bunion and hallux valgus deformities were treated under arthroscopy from July 2008 to July 2011, with an average age of 42.3 years old (ranging from 30 to 65 years old) involving 19 left feet, 28 right feet and 3 both feet. The American Orthopedic Foot and Ankle Society (AOFAS) hallux metatarsophalangeal-interphalangeal(MP-IP) Scale Score was used to evaluate the therapeutic effect.
RESULTSThere were no complications such as hallux varus, hallux rigid and nerve or blood vessel injury. Clinically, AOFAS MP-IP Scale Score was increased from 62.19 ± 6.01 preoperatively to 88.26 ± 6.81 postoperatively.
CONCLUSIONArthroscopy-assisted minimally invasive management appears to be a good procedure with advantages of less complication, little trauma and early rehabilitation for bunion and hallux valugs deformities.
Adult ; Aged ; Arthroscopy ; methods ; Female ; Hallux Valgus ; surgery ; Humans ; Middle Aged ; Minimally Invasive Surgical Procedures ; methods
5.Predictive equations and analysis of influence factors of lung ventilation based on a large occupational population in North China.
Yong-hui WU ; Zhong-yi ZHANG ; Bao-qi GANG ; E J LOVE
Chinese Journal of Industrial Hygiene and Occupational Diseases 2005;23(5):321-325
OBJECTIVETo establish suitable predictive equations of lung function for occupational population in North China.
METHODSA total of 5 002 on the job or retired healthy adults from five enterprises in North China with category of mild or moderate work intensity underwent spirometry using a Chest HI-198 spirometer and the procedures recommended by the American Thoracic Society, were a sample.
RESULTSThe data of 3 913 subjects were used. A normal distribution of our data was shown using the normality test and distribution curve. Univariate analysis showed that both age and height were significantly correlated with FVC, FEV(1), FEV(1)/FVC (%) and MMF. Further multiple linear stepwise regression analysis indicated that the levels of FVC, FEV(1), FEV(1)/FVC (%) and MMF were highly influenced by age, height, and weight rather than chest circumference. Thus, only age, height, and weight were introduced into our regression equations. Data from the studied subjects and other source were utilised to examine the validity of the equations and a high accordance rate (> 90%) was obtained. No significant difference (P > 0.05) was found in the predictive values between the simplified equations and equations in which more variables were included.
CONCLUSIONThe studied predictive equations for male non-smokers, female non-smokers, and male smokers were established based on data from a large occupational population. These equations should be more applicable for evaluating lung ventilatory function of occupational populations in North China.
Adolescent ; Adult ; Aged ; Aged, 80 and over ; China ; Female ; Humans ; Male ; Middle Aged ; Occupational Exposure ; Occupations ; Predictive Value of Tests ; Pulmonary Ventilation ; Reference Values ; Regression Analysis ; Reproducibility of Results ; Respiratory Function Tests ; standards ; Vital Capacity ; Young Adult
6.Research of seed quality grading of Glycyrrhiza uralensis.
Qun SUN ; Li-Gang YANG ; Zi-Mian DING ; Jian-Hua WANG ; Bao-Qi SUN
China Journal of Chinese Materia Medica 2008;33(10):1126-1129
OBJECTIVETo formulate the seed quality grading standard of Glycyrrhiza uralensis.
METHODThousand-grain weight, seed moisture, germination rate, purity of G. uralensis seed samples from 24 regions were tested. Through statistical analysis, the key indicator and the reference indicators for seed quality grading were defined.
RESULTGermination percentage was the primary indicator of seed quality grading, thousand-grain weight, cleanliness and moisture content were important reference indicators.
CONCLUSIONThe seed quality of each grade should reach the following requirements: for first grade seeds, germination percentage > or = 85% , purity > or = 92%, thousand-grain weight > or = 13 g, seed moisture < or = 11%; for second grade seeds, germination percentage 75%-85%, purity 83%-92%, thousand-grain weight 11-13 g, seed moisture < or = 11%; for third grade seeds, germination percentage 65%-75%, purity 74%-83%, thousand-grain weight 9-11 g, seed moisture < or = 11%.
Germination ; Glycyrrhiza uralensis ; chemistry ; classification ; physiology ; Quality Control ; Seeds ; chemistry ; classification ; physiology
7.Prospective study of transsphenoidal pituitary surgery: is tumor volume a predictor for the residual tumor?
Resha SHRESTHA ; Lei QI ; Gang BAO ; Mao-de WANG
Chinese Medical Journal 2012;125(14):2444-2448
BACKGROUNDThe presence of residual tumor after surgery for pituitary adenoma may necessitate further treatment. The suprasellar and parasellar extension of the tumor have been widely considered as the predictors for residual tumor. However there is scarcity of studies regarding the preoperative tumor volume and residual tumor. This study was conducted to evaluate if tumor volume could predict the outcome of transsphenoidal pituitary surgery.
METHODSA prospective study was designed and 48 patients who underwent transsphenoidal pituitary surgery within 1 year in the First Affiliated Hospital of Xi'an Jiaotong University were included in this study. The preoperative tumor volume and immediate postoperative tumor volume (within 4 - 7 days) were calculated in the contrast magnetic resonance imaging by using the formula of ellipsoid. All these volumes were divided into three subgroups, i.e. group 1, group 2 and group 3 with preoperative volume of less than 4 cm(3), 4 - 8 cm(3), and more than 8 cm(3) respectively. The parasellar and suprasellar extension of the tumor were also classified by Knosp and modified Hardy's classifications.
RESULTSBaseline characteristics were comparable. The preoperative tumor volume of more than 8 cm(3) (group 3, (12.1 ± 1.1) cm(3)) had increased risk on postoperative tumor residue (P < 0.01) than the other two groups ((2.1 ± 0.3) cm(3) and (6.1 ± 0.3) cm(3) in groups 1 and 2). The mean postoperative volume in group 3 patients ((2.2 ± 0.1) cm(3)) was significantly higher than the other two groups (P < 0.01).
CONCLUSIONPreoperative volume of more than 8 cm(3) can be considered as a predictor for postoperative residual volume.
Adolescent ; Adult ; Aged ; Female ; Humans ; Male ; Middle Aged ; Pituitary Gland ; pathology ; surgery ; Pituitary Neoplasms ; pathology ; surgery ; Prospective Studies ; Treatment Outcome ; Tumor Burden ; physiology ; Young Adult
8.A novel regulable sutureless aortic arch prosthesis:an experimental study
Qing-Qi HAN ; Zhi-Yun XU ; Bao-Ren ZHANG ; Sheng-Dong HUANG ; Lin HAN ; Fang-Lin LU ; Zhi-Gang SUN ; Dong ZHOU ; Hong-Cheng LIU ;
Academic Journal of Second Military Medical University 1999;0(12):-
Objective:To develop a novel regulable sutureless aortic arch prosthesis and to apply it in an animal experimental study.Methods:The arch skeleton of the prosthesis was made of tandem Z-shape NiTiNOL wire;the branch skeleton was made of laser-cut NiTiNOL tube;and the whole skeleton was coated with thin ePTFE film.The blood vessel was anastomosed by di- rect ligature,needing no manual suturing.The prosthesis was applied in swine aortic arch operations under the bypass condi- tion.The practicality for surgery and the feasibility of anastomosis of the prosthesis were assessed.Results:Aortic arch opera- tions were successfully performed in 6 of the 8 experimental animals.The prostheses were easy to use,and the mean bypass time was only 10 min.The blood loss of the anastomoses was less than 100 ml within 8 h postoperatively in 5 animals;one had more blood loss due to prosthesis mismatch.Conclusion:The novel regulable sutureless aortic arch prosthesis has satisfactory practicality for surgery and reliable anastomosis,making it promising in future clinical application.
9.Early Changes in Apparent Diffusion Coefficient for Salivary Glands during Radiotherapy for Nasopharyngeal Carcinoma Associated with Xerostomia.
Qing ZHANG ; Yu Mei WEI ; Yuan Gang QI ; Bao Sheng LI
Korean Journal of Radiology 2018;19(2):328-333
OBJECTIVE: To evaluate the early changes in the apparent diffusion coefficient (ADC) of the salivary glands during radiotherapy (RT) and their association with the degree of xerostomia at 6 months after RT in patients with nasopharyngeal carcinoma (NPC). MATERIALS AND METHODS: We enrolled 26 patients with NPC who underwent RT. Each patient underwent diffusion-weighted MRI of the salivary glands at rest and with gustatory stimulation within 1 week before RT and 2 weeks after the beginning of RT. The ADC at rest (ADCR) and increase and increase rate with stimulation (ADCI, ADCIR) of the submandibular and parotid glands were calculated. The differences in the variables' values between 2 weeks after the beginning of RT and baseline (ΔADCR, ΔADCI, and ΔADCIR) were compared to the degree of xerostomia at 6 months after RT. RESULTS: The ADCR of the submandibular and parotid glands were both significantly higher at 2 weeks after the beginning of RT than found at baseline (both p < 0.01). The ADCI and ADCIR for the parotid glands were both significantly lower at 2 weeks after the beginning of RT than found at baseline (both p < 0.01). ΔADCI and ΔADCIR of the parotid glands were associated with the degree of xerostomia at 6 months after RT (r = −0.61 and −0.72, both p < 0.01). CONCLUSION: The ADCs of the salivary glands change early during RT. The differences in the ADC increase and increase rate of the parotid glands between 2 weeks after the beginning of RT and baseline were associated with the degree of xerostomia at 6 months after RT.
Diffusion*
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Humans
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Magnetic Resonance Imaging
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Parotid Gland
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Quality of Life
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Radiotherapy*
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Salivary Glands*
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Xerostomia*
10.Primers for detecting gene rearrangement in different regions of immunoglobulin heavy chain genes and their application in diagnosis of paraffin-embedded lymphoma tissues.
Zong-Li QI ; Bao ZHANG ; Xi-Qun HAN ; Mei-Gang ZHU ; Tong ZHAO
Journal of Southern Medical University 2008;28(11):1964-1967
OBJECTIVETo analyze and optimize the gene rearrangement primers of different frame regions (FR) of immunoglobulin heavy chain (IgH) genes by bioinformatic methods and explore the application of these primers in the detection of paraffin-embedded lymphoma tissues.
METHODSThree pairs of primers from IgH FR1, FR2 and FR3 regions (P1c, P2A and P31, respectively) were selected as the B cell gene rearrangement primers after comparison of the gene fragments in 44 IgH variable and 6 joining regions. Using one pair of T cell receptor (TCR) gamma primer as the T cell gene rearrangement primer, 101 histopathologically confirmed lymphoproliferative samples including 80 B cell lymphomas, 14 T cell lymphomas, and 7 reactive proliferative lymph nodes were examined by PCR for gene arrangement. The DNAs from DG75 and Jurkat cell lines were used as the positive controls for B and T cell lymphoma, respectively, with those from reactive proliferative lymph nodes as the negative control.
RESULTSThe positivity rates of IgH primers (P1c, P2A and P31) in the 80 B cell lymphomas were 37.5% (30/80), 52.5% (42/80) and 70.0% (56/80), respectively, and only one of the 14 T cell lymphoma cases was positive for the primers, suggesting significant differences in the detection rates of B cell lymphomas by the 3 primers. The detection rate was increased to 83.9% by combining the results by P31 and P2A primers. No positivity was found in the proliferative reaction tissues.
CONCLUSIONPrimers from IgH FR3 region genes are more sensitive than that from the FR1 and FR2 regions in the detection of gene rearrangement in paraffin-embedded lymphoma tissues. The detection rates can be increased by combining the results with the primers for IgH FR3 with that of FR2.
DNA Primers ; Gene Rearrangement, B-Lymphocyte, Heavy Chain ; genetics ; Humans ; Immunoglobulin Heavy Chains ; genetics ; Lymphoma, B-Cell ; diagnosis ; genetics ; pathology ; Lymphoma, Non-Hodgkin ; diagnosis ; genetics ; pathology ; Lymphoma, T-Cell ; diagnosis ; genetics ; pathology ; Male ; Paraffin Embedding