1.Identification of putative pathogens in acute endodontic infections by PCR based on 16S rDNA.
Jee Hoon KIM ; So Young YOO ; Sun A LIM ; Joong Ki KOOK ; Sang Soo LIM ; Seul Hee PARK ; Ho Keel HWANG
Journal of Korean Academy of Conservative Dentistry 2003;28(2):178-183
The purpose of this study was to investigate the frequency of 7 putative pathogens in endodontic infections. The specimens were collected from infected pulpal tissue of patients who were referred for root canal treatment to the department of conservative dentistry, Chosun University. Samples were collected aseptically using a barbed broach and a paper point. The cut barbed broaches and paper points were transferred to an eppendorf tube containing 500 ml of 1 X PBS. DNAs were extracted from the samples by direct DNA extraction method using lysis buffer (0.5% EDTA, 1% Triton X-100). Identification of 7 putative pathogens was performed by PCR based on 16S rDNA. The target species were as follows: Porphyromonas endodontalis, Porphyromonas gingivalis, Prevotella intermedia, Prevotella nigrescens, Bacteroides forsythus, Actinobacillus actinomycetemcomitans, and Treponema denticola. Our data revealed that the prevalence of P. endodontalis was found in 88.6% (39/54), P. gingivalis 52.3% (23/44), P. nigrescens 18.2% (8/44), P. intermedia 15.9% (7/44), B. forsythus 18.2% (8/44), A. actinomycetemcomitans 2.3% (1/44), T. denticola 25% (11/44) of the samples. The high prevalence of P. endodontalis and P. gingivalis suggests that they may play an important role in the etiology of endodontic infections.
Aggregatibacter actinomycetemcomitans
;
Bacteroides
;
Dental Pulp Cavity
;
Dentistry
;
DNA
;
DNA, Ribosomal*
;
Edetic Acid
;
Humans
;
Neptune
;
Polymerase Chain Reaction*
;
Porphyromonas endodontalis
;
Porphyromonas gingivalis
;
Prevalence
;
Prevotella intermedia
;
Prevotella nigrescens
;
Treponema denticola
2.Detection of black-pigmented bacteria in infected root canals.
Eun Kyoung KWON ; Eun Sook KIM ; Ju Seog KWAK ; Hwang LEE ; Su Jong LEE ; Mi Kyung IM
Journal of Korean Academy of Conservative Dentistry 2002;27(1):54-65
Black-pigmented bacteria have been implicated in the endodontic infections. This group of microorganisms includes Porphyromonas endodontalis, Porphyromonas gingivalis, Prevotella intermedia, and Prevotella nigrescens. The organisms display a wide variety of virulence factors that may be pertinent to acute endodontic infections. The aim of this study was to identify P. endodontalis, P. gingivalis, P. intermedia, and P. nigrescens by using special potency disk test, filter paper spot test, 16S rRNA gene-directed PCR, and API 32A. Microbial samples were collected from root canals of 33 intact teeth with necrotic pulp and/or apical periodontitis. Conventional laboratory methods were used for identification of the strains of black pigmented bacteria. Eighteen of 33 samples were positive for the growth of black-pigmented bacrteria. Five colonies were cultured from each pure cultured colonies from Brucella agar plate. Seventy seven colonies were positive for the growth of black-pigmented bacteria. Thirty three of 77(42.6%) were identifed as P. nigrescens, 10 of 77(12.9%) were P. gingivalis, 6 of 77(7.8%) were P. endodontalis, 10 of 77(12.9%) were P. intermedia. On the contrary the reference strains of P. nigrescens, experimental strains of P. nigrescens was sensitive to kanamycin in special potency disk test. 16S rRNA gene PCR and API test after rapid presumptative identification methods, such as special potency disk test and filter paper spot test, would be accurate detection methods for black-pigemented bacteria.
Agar
;
Bacteria
;
Brucella
;
Dental Pulp Cavity
;
Genes, rRNA
;
Kanamycin
;
Periapical Periodontitis
;
Polymerase Chain Reaction
;
Porphyromonas endodontalis
;
Porphyromonas gingivalis
;
Prevotella intermedia
;
Prevotella nigrescens
;
Tooth
;
Virulence Factors
3.Distribution of oral pathogens in infections of endodontic origin.
Seung Yoon KIM ; Ho Young CHOI ; Sang Hyuk PARK ; Gi Woon CHOI
Journal of Korean Academy of Conservative Dentistry 2003;28(4):303-313
It has been documented that periodontopathic bacteria are also implicated in endodontic infections. 16S rDNA gene-directed PCR was to examine the prevalence of periodontopathic bacteria including Actinobacillus actinomycetemcomitans (Aa), Prevotella intermedia (Pi), Prevotella nigrescens (Pn), Porphyromonas gingivalis (Pg), Porphyromonas endodontalis (Pe), and Treponema denticola (Td) in the root canals of 36 endodontically infected teeth having apical lesions with or without clinical symptoms like pain, swelling, and fistula. 1. In 36 infected root canals, most frequently detected bacterial species was Pg (61.1%), followed by Td (52.8%) and Pe (38.9%). 2. Of 36 infected root canals, Aa was detected in 6 canals (16.7%) of the teeth, all of which showed clinical symptoms. 3. Of 36 infected root canals, Pi and Pn were found in 4 (13.9%) and 5 (33.3%), respectively. Notably, prevalence of Pn in the symptomatic teeth was 50.0%. 4. One of black-pigmented anaerobic bacteria (BPB) including Pi, Pn, Pe, and Pg was detected in all of the teeth that showed pain or especially swelling but not fistula. It was, however, found that prevalence of BPB in the asymptomatic teeth or the teeth with fistula was only 40%. 5. Pe and Pg were detected in the teeth regardless of the presence or absence of symptoms. 6. Td was detected in the teeth regardless of the presence or absence of symptoms. High prevalence of BPB in the symptomatic teeth but low in the asymptomatic teeth suggests that BPB may play an important role in the pathogenesis of periapical lesions.
Aggregatibacter actinomycetemcomitans
;
Bacteria
;
Bacteria, Anaerobic
;
Dental Pulp Cavity
;
DNA, Ribosomal
;
Fistula
;
Polymerase Chain Reaction
;
Porphyromonas endodontalis
;
Porphyromonas gingivalis
;
Prevalence
;
Prevotella intermedia
;
Prevotella nigrescens
;
Tooth
;
Treponema denticola
4.Isolation and Partial Characterization of Hemin-binding Cell Envelope Proteins from Porphyromonas gingivalis, Prevotella intermedia, and Prevotella nigrescens.
The Journal of the Korean Academy of Periodontology 2006;36(1):155-165
The results of this study confirm that the availability of hemin influences the expression of selected membrane proteins of Porphyromonas gingivalis, Prevotella intermedia, and Prevotella nigrescens. A 30 kDa (heated 24 kDa) hemin-binding protein whose expression is hemin regulated was identified and purified in P. gingivalis. A strong hemin-binding function was found by LDS-PAGE and TMBZ staining when P. gingivalis cells were grown under hemin-limited conditions. A 50 kDa cell envelope associated protein, whose expression is hemin regulated, is considered to be a putative hemin binding protein from P. intermedia and P. nigrescens, respectively. N-terminal amino acid sequence analysis of CNBr-digested 24 kDa hemin binding protein from P. gingivalis revealed that this protein belongs to a new, so far undescribed hemin-binding class of proteins. N-terminal amino acid sequence of a 50 kDa putative hemin binding protein from P. intermedia was identical with Enolase from Streptococcus intermedia. Work is in progress to further characterize the molecular structure of these proteins.
Amino Acid Sequence
;
Carrier Proteins
;
Hemin
;
Membrane Proteins
;
Molecular Structure
;
Phosphopyruvate Hydratase
;
Porphyromonas gingivalis*
;
Porphyromonas*
;
Prevotella intermedia*
;
Prevotella nigrescens*
;
Prevotella*
;
Sequence Analysis, Protein
;
Streptococcus
5.Oral Microbiota Comparison between Healthy volunteers, Periodontitis patients and Oral cancer patients.
Hee Sam NA ; Seyeon KIM ; Yoon Hee CHOI ; Ju Yeon LEE ; Jin CHUNG
International Journal of Oral Biology 2013;38(4):181-188
The presence of distinct bacterial species is found to be dependent on age, diet, and disease. We compared the detection rate of several oral bacterial strains in a cohort of 36 subjects including healthy volunteers, periodontal patients, and oral cancer patients. Gargling samples were obtained from these subjects from which DNA was then extracted. Specific primers for 29 bacterial species were used for PCR detection. In the oral cancer patients, Capnocytophaga ochracea, Gemella morbillorum, and Streptococcus salivarius were detected more frequently compared with the healthy volunteers and periodontitis patients. Fusobacterium nucleatum/polymorphym and Prevotella nigrescens were significantly less prevalent in oral cancer patients than the other groups. In periodontitis patients, Porphyromonas gingivalis and Treponema denticola were more frequently found compared with the healthy volunteers. In the healthy volunteer group, Peptostreptococcus anaerobius was more frequently found than the other groups. The detection rate of several oral bacterial species was thus found to differ between healthy volunteers, periodontitis patients and oral cancer patients.
Capnocytophaga
;
Cohort Studies
;
Diet
;
DNA
;
Fusobacterium
;
Gemella
;
Healthy Volunteers*
;
Humans
;
Microbiota*
;
Mouth Neoplasms*
;
Peptostreptococcus
;
Periodontitis*
;
Polymerase Chain Reaction
;
Porphyromonas gingivalis
;
Prevotella nigrescens
;
Streptococcus
;
Treponema denticola
6.Identification of putative periodontal pathogens in Korean chronic periodontitis patients.
Jeong Ho YUN ; Jung Eun PARK ; Doo Il KIM ; Syng Ill LEE ; Seong Ho CHOI ; Kyoo Sung CHO ; Dae Sil LEE
The Journal of the Korean Academy of Periodontology 2008;38(2):143-152
PURPOSE: Specific bacteria are believed to play an important role in chronic periodontitis. Although extensive microbial analyses have been performed from subgingival plaque samples of periodontitis patients, systemic analysis of subingival microbiota has not been carried out in a Korean population so far. The purpose of this study was to investigate the prevalence of 29 putative periodontal pathogens in Korean chronic periodontitis patients and evaluate which pathogens are more associated with Korean chronic periodontitis. MATERIAL AND METHODS: A total of 86 subgingival plaque samples were taken from 15 chronic periodontits(CP) patients and 13 periodontally healthy subjects in Korea. CP samples were obtained from the deepest periodontal pocket (>3 mm probing depth[PD]) and the most shallow periodontal probing site (< or =3 mm PD) in anterior tooth and posterior tooth, respectively, of each patient. Samples in healthy subjects were obtained from 1 anterior tooth and 1 posterior tooth. Polymerase chain reaction (PCR) of 16S ribosomal DNA (rDNA) of subgingival plaque bacteria was performed. Detection frequencies(% prevalence) of 29 putative periodontal pathogens were investigated as bacterium-positive sites/total sites RESULTS: With the exception of Olsenella profuse and Prevotella nigrescens, the sites of diseased patients generally showed higher prevalence than the healthy sites of healthy subjects for all bacteria analyzed. Tanerella forsythensis (B.forsythus), Campylobacter rectus, Filifactor alocis, Fusobacterium nucleatum, Porphyromonas endodontalis and Porphyromonas gingivalis were detected in more than 80% of sites with deep probing depths in CP patients. In comparison between the sites (deep or shallow PD) of CP patients and the healthy sites of healthy subjects, there was statistically significant difference(P <0.05) of prevalence in T.forsythensis (B.forsythus), C.rectus, Dialister invisus, F.alocis, P.gingivalis and Treponema denticola. CONCLUSION: Our results demonstrate that the four putative periodontal pathogens, T.forsythensis (B.forsythus), C.rectus, P.gingivalis and F.alocis are closely related with CP patients in the Korean population.
Bacteria
;
Campylobacter rectus
;
Chronic Periodontitis
;
DNA, Ribosomal
;
Fusobacterium nucleatum
;
Humans
;
Korea
;
Metagenome
;
Periodontal Pocket
;
Periodontitis
;
Polymerase Chain Reaction
;
Porphyromonas endodontalis
;
Porphyromonas gingivalis
;
Prevalence
;
Prevotella nigrescens
;
Tooth
;
Treponema
7.In Vitro Antibacterial Effect of a Mouthrinse Containing CPC (Cetylpyridinium Chloride), NaF and UDCA(ursodeoxycholic acid) against Major Periodontopathogens.
Chong Kwan KIM ; Bong Kyu CHOI ; Yun Jung YOO ; Sang Nyun KIM ; Jae Kyun SEOK ; Moon Moo KIM
The Journal of the Korean Academy of Periodontology 1999;29(2):325-332
The antibacterial efficacy of a mouthrinse(Denta Gargle) containing CPC(cetylpyridinium chloride), NaF and UDCA(ursodeoxycholic acid), on major periodontopathogens, was in vitro examined and compared with that of Listerine by a broth dilution method. The bacteria tested were Actinobacillus actinomycetemcomitans, Bacteroides forsythus, Fusobacterium nucleatum subsp. vincentii, Prevotella intermedia, Porphyromonas gingivalis and Treponema denticola. The growth of all the bacteria were completely inhibited by a 1-min exposure to the both mouthrinses. When diluted at 1:5 or more, all bacteria analyzed but P. intermedia were not inhibited by Listerine. In contrast, Denta Gargle showed highly increased maximum inhibitory dilutions(MID) against all periodontopathogens included in this study, with MIDs ranging from 5-fold(F. nucleatum) to 160-fold dilutions(P. intermedia). The MIDs against A. actinomycetemcomitans, B. forsythus, P. gingivalis and T. denticola. were 1:40, 1:80, 1:80 and 1:80, respectively.
Aggregatibacter actinomycetemcomitans
;
Bacteria
;
Bacteroides
;
Cetylpyridinium
;
Fusobacterium nucleatum
;
Porphyromonas gingivalis
;
Prevotella intermedia
;
Treponema denticola
8.Antimicrobial effect of cefixime on 6 species of periodotopathogens.
Hyun Seon JANG ; Mun Gyu PARK ; Joong Ki KOOK ; Hwa Sook KIM ; Byung Ock KIM
The Journal of the Korean Academy of Periodontology 2005;35(2):401-411
The aim of this study was to determine the minimal inhibitory concentration(MIC) of cefi- xime, which is a 3rd generation of cefalosporin, against 6 species of putative periodon- topathogens; Fusobacterium nucleatum, Actinobacillus actinomycetemcomitans, Prevotella inter- media, Prevotella nigrescens, Tannerella forsythia and Porphyromonas gingivalis. The efficacy of cefixime was examined by comparing it with that of several antibiotics(amoxicillin, Aug- mentin(R) ciprofloxacin, metronidazole, and tetracycline), which were used as the control. The MIC was measured using a microdilution method. The MIC of cefixime against the putative periodotopathogens, as a single use regimen, was relatively lower than that of the other antibiotics. The MIC of cefixime/metronidazole against P. intermedia ChDC KB14, P. nigres- cens ChDC KB50, F. nucleatum ChDC PV-F37, F. nucleatum ChDC F130, and F. nucleatum ChDC F175, as a simultaneous regimen, was lower than that of the other antibiotics. The concentration of cefixime in the crevicular fluid of volunteers who received 250mg every 12 hours for 3 days was 9microgram/ml after 9 hours. In conclusion, cefixime showed good anti- microbial activity in a single treatment or as a combined therapy with amoxicillin, Aug- mentin(R) or metronidazole against 6 periodontopathogens.
Aggregatibacter actinomycetemcomitans
;
Amoxicillin
;
Anti-Bacterial Agents
;
Cefixime*
;
Ciprofloxacin
;
Forsythia
;
Fusobacterium nucleatum
;
Metronidazole
;
Porphyromonas gingivalis
;
Prevotella
;
Prevotella nigrescens
;
Volunteers
9.Relationships of five periodontal pathogens causing subgingival plaque in patients with chronic periodontitis under different periodontal conditions.
Ting ZHOU ; Hong XIE ; Zhaohui YUE
West China Journal of Stomatology 2013;31(5):518-521
OBJECTIVEThis study aimed to assess the relationship between the distributions of Haemophilus aggregatibacter (H. aggregatibacter ), Porphyromonas gingivalis (P. gingivalis ), Prevotella intermedia (P. intermedia), Tannerella forsythensis (T. forsythensis), and Treponema denticola (T. denticola) in subgingival plaque and different periodontal conditions of chronic periodontitis.
METHODSTwenty patients (80 sites) with chronic periodontitis and ten healthy subjects (20 sites) were included. The study sites were distributed into different groups according to the differences in their pocket probing depths (PD). The groups were described as follows: group A, PD< or = 4 mm; group B, 4 mm < PD < or = 6 mm; group C, PD>6 mm. Semi-quantification of the subgingival microorganism samples was analyzed by polymerase chain reaction (PCR) and reverse hybridization assay.
RESULTSThe prevalence rates and quantities of P. gingivalis, P. intermedia, T. forsythensis, and T. denticola were significantly higher in groups B and C than in the healthy group. Higher prevalence rates and quantities of P. gingivalis were detected in group A than in the healthy group. The quantities of T. forsythensis and T. denticola were also significantly higher in group C than in group B. However, the prevalence rates and quantities ofH. aggregatibacter showed no significant difference among the groups.
CONCLUSIONThe prevalence rates and levels ofP. gingivalis, P. intermedia, T. forsythensis, and T. denticola possibly increased as the depths of the periodontal pockets increased. The quantity ofP. gingivalis was correlated with the early stage of chronic periodontitis. The quantities of T. forsythensis and T. denticola were associated with local development of moderate or severe chronic periodontitis.
Bacteroides ; Chronic Periodontitis ; Dental Plaque ; Humans ; Periodontal Pocket ; Polymerase Chain Reaction ; Porphyromonas gingivalis ; Prevotella intermedia ; Treponema denticola
10.Identification of bacteria from the peri-implant sulcus of orthodontic mini-implants using 16S rDNA clone library.
Sung Hoon LIM ; Kwang Won KIM ; So Young YOO ; Joong Ki KOOK ; Young Il CHANG
Korean Journal of Orthodontics 2006;36(4):251-262
OBJECTIVE: The purpose of this study was to compare the bacterial flora at the peri-implant sulcus of the orthodontic mini-implant placed in the alveolar mucosa with the bacterial flora at the adjacent healthy gingival sulcus. METHODS: Two plaque samples from 7 patients were collected by inserting paper points into the sulcus between the mini-implant and ligature wire connected to the mini-implant head and inflamed alveolar mucosa, and from the gingival sulcus of a healthy tooth adjacent to the mini-implant. RESULTS: Using 16S rDNA clone library, the 24 kinds of bacteria including Haemophilus aphrophilus, Sphingomonas species, Capnocytophaga species, Prevotella melaninogenica, Lachnospiraceae species, Porphyromonas species, Neisseria flava were identified only from the sulcus around the mini-implant. These bacteria constituted only 9.2% of total clones, and the bacteria identified from both the sulcus around mini-implants and the gingival sulcus constituted 80.4% of total clones. Of these bacteria, clones of Prevotella species, Atopobium rimae, Veillonella species, Streptococcus intermedius/constellatus, Streptococcus salivarius were more frequently isolated from the peri-implant sulcus. CONCLUSION: This study suggests that a broad epidemiological study is needed to find causative bacteria which induce inflammation from the peri-implant sulcus.
Aggregatibacter aphrophilus
;
Bacteria*
;
Capnocytophaga
;
Clone Cells*
;
DNA, Ribosomal*
;
Head
;
Humans
;
Inflammation
;
Ligation
;
Mucous Membrane
;
Neisseria
;
Porphyromonas
;
Prevotella
;
Prevotella melaninogenica
;
Sphingomonas
;
Streptococcus
;
Tooth
;
Veillonella