1.Comparison on resistance of bacteriophages to sodium dichloroisocyanurate in laboratory.
Zhao-bin CHEN ; Chao-wu ZHANG ; Xin XU ; Min ZHU ; Guo-qing WANG
Chinese Journal of Preventive Medicine 2006;40(1):25-28
OBJECTIVETo scan the most resistable bacteriophage as an indicator in disinfection tests, and to study the resistance of bacteriophage T4, Phichi 174D, and f2 to the sodium dichloroisocyanurate (NaDCC) in laboratory.
METHODSThe virucidal activity of NaDCC against bacteriophage T4, Phichi 174D, and f2 were assessed by suspension test. The neutralizer was selected and be appraised by test of neutralizer. Bacteriophage T4, Phichi 174D, and f2 were detected and enumerated by the double-agar-layer plaque technique.
RESULTS(1) With 150 mg/L of available chlorine of NaDCC solution, within a contact time of 40 minutes, or 300 mg/L, 5 minutes, the reductions of bacteriophage T4 achieved the "disinfection" level [log(10) inactivation value or log(10) reduction value of bacteriophage T4 (log(10)No-log(10)Nt) > or = 4.00 log(10)]. (2) With 300 mg/L of available chlorine of NaDCC solution, within a contact time of 5 minutes, or 400 mg/L, 3 minutes, the reductions of bacteriophage Phichi 174D achieved the "disinfection" level. (3) With 2000 mg/L of available chlorine of NaDCC solution, within a contact time of 20 minutes, or 4000 mg/L, 5 minutes, the reductions of bacteriophage f2 might achieve the "disinfection" level.
CONCLUSIONThe order of resistance of the above three bacteriophages to NaDCC from greatest to smallest is as follows: bacteriophage f2 > bacteriophage T4 > bacteriophage Phichi 174D.
Bacteriophage T4 ; drug effects ; Bacteriophage phi X 174 ; drug effects ; Bacteriophages ; drug effects ; Disinfectants ; pharmacology ; Drug Resistance, Viral ; Sodium Hypochlorite ; pharmacology
2.Rapid genetic characterization of a novel Enterobacteria phage and determination of its host recognizing genes.
Huanhuan JIANG ; Sheng WANG ; Cun LI ; Dabin LIU ; Changming YU ; Xiaoping AN ; Zhiqiang MI ; Jiankui CHEN ; Yigang TONG
Chinese Journal of Biotechnology 2011;27(6):884-890
We isolated a novel Enterobacteria phage IME08 from hospital sewage, then confirmed it was a double-stranded DNA phage by digesting its genetic material with DNase I, RNase A and several restriction endonucleases respectively. BLAST results of random fragments generated by a random PCR cloning method revealed that it belonged to T4-like virus. We subsequently determined the host recognizing genes (g37 and g38) sequence with a PCR-based "genome jumping" protocol based on highly conserved region at 5' terminus of g37 from four other T4-like Bacteriophages (T4, JS98, T2 and K3). These molecular biological methods enabled us to readily characterize the bacteriophage and efficiently determine the sequence of the genes of interest based on very limited conserved sequence information.
Bacteriophage T4
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genetics
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isolation & purification
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Cloning, Molecular
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DNA, Viral
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genetics
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Escherichia coli
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genetics
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virology
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Genome, Viral
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genetics
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Host Specificity
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genetics
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Polymerase Chain Reaction
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methods
3.Production and Storage of Virus Simulants.
In Sun SHIN ; Doyeong KIM ; Sung Jun YANG ; Byoung Chul LIM ; Younggil CHA ; Seongjoo KIM ; Tae Ju CHO
Journal of Bacteriology and Virology 2018;48(2):37-48
We have examined isolation and identification protocols for three virus simulant candidates to biological warfare agents. MS2 phage, a simulant for yellow fever virus and Hantaan virus, was propagated using as a host an E. coli strain with F pilus. MS2 phage genome was examined by reverse transcription and polymerase chain reaction (RT-PCR). Coat protein of the phage preparation was examined by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and mass spectrometric analysis. Cydia pomonella granulosis virus (CpGV) is a virus simulant candidate to smallpox virus. CpGV was isolated from a commercialized CpGV pellet. In this study, we developed new isolation and identification protocols for CpGV. One disadvantage of using CpGV is that it is not easy to determine viability of the virus. Here, we have included T4 phage as an alternative. We established a high titer production protocol and developed an easy genome identification protocol that does not require purified phage DNA. Stability of these virus preparations was also examined under various storage conditions. When the virus preparations were not subjected to freeze drying, MS2 phage was most stable when it was stored in liquid nitrogen but unstable at 4℃. In contrast, T4 phage was most stable when it was stored at 4℃. CpGV was stable at −20℃ but not at 4℃. Stability during or after freeze drying was also investigated. The result showed that 70~80% MS2 survived the freeze drying process. In contrast, only about 15% of T4 phage survived during the freeze drying. CpGV was found to be degraded during freeze drying.
Bacteriophage T4
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Bacteriophages
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Biological Warfare Agents
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DNA
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Electrophoresis
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Freeze Drying
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Genome
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Granulovirus
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Hantaan virus
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Levivirus
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Nitrogen
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Polymerase Chain Reaction
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Reverse Transcription
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Variola virus
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Yellow fever virus
4.Comparative study on the resistance of Bacteriophage phi chi 174D, T4 and f2 to an iodophor in laboratory.
Zhao-bin CHEN ; Xin XU ; Chao-wu ZHANG ; Min ZHU ; Guo-qing WANG ; Wei SUN
Chinese Journal of Experimental and Clinical Virology 2006;20(2):78-80
BACKGROUNDTo screen for the most resistant bacteriophage as indicator in disinfection tests, the resistance of bacteriophage phi chi 174D, T4 and f2 to iodophor were observed in laboratory.
METHODSThe virucidal activity of iodophor against bacteriophage phi chi 174D, T4, and f2 were assessed by suspension test. The neutralizer is selected and appraised by testing with neutralizer. Bacteriophage phi chi 174D, T4, and f2 were detected and enumerated by the double-agar-layer plaque technique.
RESULTS(1) With 500 mg/L of available iodine of iodophor solution, within a contact time of 40 min, or 750 mg/L, 10 min, or 1000 mg/L, 5 min, the reduction of bacteriophage phi chi 174D could achieve the "disinfection" level [log10 inactivation value (LIV) or log10 reduction value (LRV) of bacteriophage phi chi 174D (log10 No-log10 Nt) was > or = 4.00 log10]. (2) With 600 mg/L of available iodine of iodophor solution, within a contact time of 40 min, or 700 mg/L, 5 min, the reductions of bacteriophage T4 could achieve the "disinfection" level. (3) With 50 mg/L of available iodine of iodophor solution, within a contact time of 10 min, or 75 mg/L, 10 min, the reductions of bacteriophage f2 could achieve the "disinfection" level.
CONCLUSIONThe order of resistance of the above three bacteriophages to iodophor from greatest to smallest is as follows: bacteriophage phi chi 174D greater than bacteriophage T4 > bacteriophage f2.
Bacteriophage T4 ; drug effects ; Bacteriophage phi X 174 ; drug effects ; Bacteriophages ; drug effects ; Disinfectants ; pharmacology ; Disinfection ; methods ; Dose-Response Relationship, Drug ; Drug Resistance, Viral ; Iodophors ; pharmacology ; Surface-Active Agents ; pharmacology ; Virus Inactivation ; drug effects
5.Development of Molecular Diagnosis Using Multiplex Real-Time PCR and T4 Phage Internal Control to Simultaneously Detect Cryptosporidium parvum, Giardia lamblia, and Cyclospora cayetanensis from Human Stool Samples
Ji Hun SHIN ; Sang Eun LEE ; Tong Soo KIM ; Da Won MA ; Shin Hyeong CHO ; Jong Yil CHAI ; Eun Hee SHIN
The Korean Journal of Parasitology 2018;56(5):419-427
This study aimed to develop a new multiplex real-time PCR detection method for 3 species of waterborne protozoan parasites (Cryptosporidium parvum, Giardia lamblia, and Cyclospora cayetanensis) identified as major causes of traveler's diarrhea. Three target genes were specifically and simultaneously detected by the TaqMan probe method for multiple parasitic infection cases, including Cryptosporidium oocyst wall protein for C. parvum, glutamate dehydrogenase for G. lamblia, and internal transcribed spacer 1 for C. cayetanensis. Gene product 21 for bacteriophage T4 was used as an internal control DNA target for monitoring human stool DNA amplification. TaqMan probes were prepared using 4 fluorescent dyes, FAM™, HEX™, Cy5™, and CAL Fluor Red® 610 on C. parvum, G. lamblia, C. cayetanensis, and bacteriophage T4, respectively. We developed a novel primer-probe set for each parasite, a primer-probe cocktail (a mixture of primers and probes for the parasites and the internal control) for multiplex real-time PCR analysis, and a protocol for this detection method. Multiplex real-time PCR with the primer-probe cocktail successfully and specifically detected the target genes of C. parvum, G. lamblia, and C. cayetanensis in the mixed spiked human stool sample. The limit of detection for our assay was 2×10 copies for C. parvum and for C. cayetanensis, while it was 2×10³ copies for G. lamblia. We propose that the multiplex real-time PCR detection method developed here is a useful method for simultaneously diagnosing the most common causative protozoa in traveler's diarrhea.
Bacteriophage T4
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Cryptosporidium parvum
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Cryptosporidium
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Cyclospora
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Diagnosis
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Diarrhea
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DNA
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Fluorescent Dyes
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Giardia lamblia
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Giardia
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Glutamate Dehydrogenase
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Humans
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Limit of Detection
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Methods
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Multiplex Polymerase Chain Reaction
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Oocysts
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Parasites
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Real-Time Polymerase Chain Reaction