1.Visualization method of type Ⅳ pili and its application in the study of pili function.
Chinese Journal of Biotechnology 2023;39(11):4534-4549
As an important protein structure on the surface of bacteria, type Ⅳ pili (TFP) is the sensing and moving organ of bacteria. It plays a variety of roles in bacterial physiology, cell adhesion, host cell invasion, DNA uptake, protein secretion, biofilm formation, cell movement and electron transmission. With the rapid development of research methods, technical equipment and pili visualization tools, increasing number of studies have revealed various functions of pili in cellular activities, which greatly facilitated the microbial single cell research. This review focuses on the pili visualization method and its application in the functional research of TFP, providing ideas for the research and application of TFP in biology, medicine and ecology.
Fimbriae, Bacterial/metabolism*
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Bacterial Proteins/genetics*
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Bacterial Physiological Phenomena
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Bacterial Adhesion/physiology*
2.Surface display of GFP using CotX as a molecular vector on Bacillus subtilis spores.
Qian LI ; Degang NING ; Chundu WU
Chinese Journal of Biotechnology 2010;26(2):264-269
Spore coat proteins, such as CotB, CotC, CotG et al, are able to efficiently display exogenous protein on spore surface for preparing oral vaccines or enzymes. CotX is another structural protein of spore coats of Bacillus subtilis. To investigate whether CotX could carry target protein onto the spore surface, we constructed a recombinant integrative plasmid, designated as pJS749, which carries a recombinant cotX-gfp gene under the control of the cotX promoter. We transformed pJS749 into Bacillus subtilis 168(trp-), an alpha-amylase inactivated mutant DRJS749 was selected and confirmed to be a double crossover integrant, where cotX-gfp fragment was integrated into the chromosome. After induction of spore formation, significant green fluorescence was observed on spore surface of strain DRJS749 under fluorescent microcopy. This suggests that CotX is associated with the outer part of the coat. CotX can therefore be used as a molecular vehicle for spore surface display of exogenous proteins.
Bacillus subtilis
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genetics
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metabolism
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physiology
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Bacterial Proteins
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biosynthesis
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genetics
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Gene Expression Regulation, Bacterial
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Green Fluorescent Proteins
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biosynthesis
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genetics
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Recombinant Fusion Proteins
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biosynthesis
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genetics
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Spores, Bacterial
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genetics
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metabolism
3.Advances in the application research of bacterial ice nucleation active (ina) genes.
Chao-Rong TANG ; Fu-Zai SUN ; Ting-Chang ZHAO
Chinese Journal of Biotechnology 2002;18(4):407-410
For recent years, the research has been focused on the ina gene application in the field of biological ice nucleation. This paper reviewed the application of ina genes in bacterial cell surface display, construction of reporter gene systems, killing insect pests through induced freezing, sensitive detection of pathogenic bacteria contaminating foods, breeding of cold resistant varieties. A brief introduction of the ina gene application in killing insect pests in China was also made in this review.
Bacterial Outer Membrane Proteins
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genetics
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physiology
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Bacterial Proteins
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genetics
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physiology
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Freezing
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Insect Control
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methods
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Pseudomonas
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genetics
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Recombinant Fusion Proteins
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genetics
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Research Design
4.Spatio-temporal expression of the pathway-specific regulatory gene redD in S. coelicolor.
Li-hua ZHOU ; Yu-qin LI ; Yong-quan LI ; Dan WU
Journal of Zhejiang University. Science. B 2005;6(6):464-469
Confocal laser scanning microscopy was used to observe the spatio-temporal expression of the pathway-specific gene redD during S. coelicolor cell cultivation. The corresponding mutant S. coelicolor lyqRY1522 carrying redD::eyfp in the chromosome was constructed. The temporal expression results of the fusion protein during submerged cultivation demonstrated that expression of redD began in the transition phase, continuing through the exponential growth phase to the stationary phase, and reached maximum in the stationary phase. On the other hand, redD was expressed only in substrate mycelia during solid-state culture, while aerial mycelia remained essentially non-fluorescent throughout culture. Results demonstrated that the expression pattern of redD coincides with that of the biosynthesis of the antibiotics during culture, revealing a direct correlation between the spatio-temporal distribution of regulatory gene expression and second metabolism.
Anti-Bacterial Agents
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biosynthesis
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Bacterial Proteins
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genetics
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metabolism
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Gene Expression Profiling
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Gene Expression Regulation, Bacterial
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physiology
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Mutation
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Signal Transduction
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physiology
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Streptomyces coelicolor
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genetics
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metabolism
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Trans-Activators
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genetics
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metabolism
5.Examine the Correlation between Heat Shock Protein IbpA and Heat Tolerance in Cronobacter sakazakii.
Zhi Jing ZHAO ; Bin WANG ; Jing YUAN ; Hao Yu LIANG ; Si Guo DONG ; Ming ZENG
Biomedical and Environmental Sciences 2017;30(8):606-610
We used a proteomic approach to identify IbpA in Cronobacter sakazakii (C. sakazaki), which is related to heat tolerance in this strain. The abundance of IbpA in C. sakazakii strains strongly increased after heat shock. C. sakazakii CMCC 45402 ibpA deletion mutants were successfully constructed. The C. sakazakii CMCC 45402 ΔibpA and wild-type strains could not be distinguished based on colony morphology on LB agar plates or biochemical assays. The growth of the C. sakazakii CMCC 45402 ΔibpA mutant in heat shock conditions was indistinguishable from that of the isogenic wild-type, but showed greater heat resistance than E. coli O157:H7 strain CMCC 44828. This study suggests that the absence of a single ibpA gene has no obvious effect on the phenotype or heat resistance of the strain C. sakazakii CMCC 45402.
Bacterial Proteins
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genetics
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metabolism
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Cronobacter sakazakii
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genetics
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physiology
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Gene Expression Regulation, Bacterial
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physiology
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Genotype
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Heat-Shock Proteins
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genetics
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metabolism
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Hot Temperature
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Stress, Physiological
6.ToxR Is Required for Biofilm Formation and Motility of Vibrio Parahaemolyticus.
Long CHEN ; Yue QIU ; Hao TANG ; Ling Fei HU ; Wen Hui YANG ; Xiao Jue ZHU ; Xin Xiang HUANG ; Tang WANG ; Yi Quan ZHANG
Biomedical and Environmental Sciences 2018;31(11):848-850
Bacterial Proteins
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genetics
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metabolism
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Biofilms
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DNA-Binding Proteins
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genetics
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metabolism
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Flagella
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genetics
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metabolism
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Gene Expression Regulation, Bacterial
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Transcription Factors
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genetics
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metabolism
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Vibrio parahaemolyticus
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cytology
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genetics
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growth & development
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physiology
7.Use of rich BHI medium instead of synthetic TMH medium for gene regulation study in Yersinia pestis.
Yi Quan ZHANG ; Li Zhi MA ; Li WANG ; He GAO ; Ya Fang TAN ; Zhao Biao GUO ; Jing Fu QIU ; Rui Fu YANG ; Dong Sheng ZHOU
Biomedical and Environmental Sciences 2012;25(6):639-644
OBJECTIVEThis study is to verify the use of rich BHI medium to substitute synthetic media for gene regulation studies in Yersinia pestis.
METHODSThe transcriptional regulation of rovA by PhoP or via temperature upshift, and that of pla by CRP were investigated when Y. pestis was cultured in BHI. After cultivation under 26 °C, and with temperature shifting from 26 to 37 °C, the wild-type (WT) strain or its phoP or crp null mutant (ΔphoP or Δcrp, respectively) was subject to RNA isolation, and then the promoter activity of rovA or pla in the above strains was detected by the primer extension assay. The rovA promoter-proximal region was cloned into the pRW50 containing a promoterless lacZ gene. The recombinant LacZ reporter plasmid was transformed into WT and ΔphoP to measure the promoter activity of rovA in these two strains with the β-Galactosidase enzyme assay system.
RESULTSWhen Y. pestis was cultured in BHI, the transcription of rovA was inhibited by PhoP and upon temperature upshift while that of pla was stimulated by CRP.
CONCLUSIONThe rich BHI medium without the need for modification to be introduced into the relevant stimulating conditions (which are essential to triggering relevant gene regulatory cascades), can be used in lieu of synthetic TMH media to cultivate Y. pestis for gene regulation studies.
Bacterial Proteins ; genetics ; metabolism ; Bacteriological Techniques ; Culture Media ; pharmacology ; Gene Expression Regulation, Bacterial ; drug effects ; physiology ; Yersinia pestis ; metabolism ; physiology
8.Enhanced ergosterol production by recombinant Saccharomyces cerevisiae 1190 harboring Vitreoscilla hemoglobin gene (vgb).
Nan FAN ; Yan LI ; Quan ZHOU ; Guo-Qiang CHEN
Chinese Journal of Biotechnology 2004;20(3):441-444
Ergosterol is a principal sterol of fungi. It is a raw material for production of vitamin D2, hydrocortisone, progesterone and brassinolide. Synthesis of ergosterol requires molecular oxygen, and low oxygen tensions was reported to dramatically reduce ergosterol concentration. Vitreoscilla Hemoglobin Gene (vgb), a homodimeric hemoglobin gene from Gram-negative obligate aerobic bacterium Vitreoscilla, enables a higher specific cellular oxygen uptake rate, it also improves the oxygen transportation. In this study, recombinant plasmid pVgb-kanMX4 containing Vitreoscilla Hemoglobin Gene (vgb) and geneticin (G418) was constructed and transformed into Saccharomyces cerevisiae 1190 for enhanced ergosterol production. With sufficient oxygen supply, the ergosterol contents of recombinant and wild type strains grown in shake flasks were 1.07% and 0.573%, respectively. Under oxygen limitation condition, ergosterol contents in recombinant and wild type strains were reduced to 0.39% and 0.25%, respectively. In a 30 hours fermentation study conducted in a 5 liter fermentor, 15.1 g/L Cell Dry Weight (CDW) containing 1.38% ergosterol was obtained from growth of the recombinant strains; Only 14.8 g/L CDW containing 0.9% ergosterol was produced by the wild type strain. These results demonstrated that vgb played a role in enhancing ergosterol production.
Bacterial Proteins
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biosynthesis
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genetics
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physiology
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Cloning, Molecular
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Ergosterol
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biosynthesis
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genetics
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Fermentation
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Recombinant Proteins
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biosynthesis
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genetics
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Saccharomyces cerevisiae
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genetics
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metabolism
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Truncated Hemoglobins
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biosynthesis
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genetics
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physiology
9.Structural insights into glutathione-mediated activation of the master regulator PrfA in Listeria monocytogenes.
Yong WANG ; Han FENG ; Yalan ZHU ; Pu GAO
Protein & Cell 2017;8(4):308-312
Bacterial Proteins
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chemistry
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genetics
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metabolism
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DNA, Bacterial
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chemistry
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genetics
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metabolism
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Gene Expression Regulation, Bacterial
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physiology
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Glutathione
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metabolism
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Listeria monocytogenes
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chemistry
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genetics
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metabolism
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Peptide Termination Factors
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chemistry
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genetics
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metabolism
10.Effect of ptxA and ptxB genes of phosphotransferase system on growth of Streptococcus mutans.
Xinyu WU ; Xiaodan CHEN ; Wanghong ZHAO ; Jin HOU ; Xuan CHEN
West China Journal of Stomatology 2016;34(3):302-306
OBJECTIVEThis study aims to evaluate the effect of ptxA and ptxB genes, which are important genes in the L-ascorbate phosphotransferase system (PTS) of Streptococcus mutans (S. mutans).
METHODSThe ptxA-, ptxB-, and ptxAB-double deficient mutant as well as ptxAB-complemented strain were constructed. Quantitative real-time polymerase chain reaction analysis was performed to evaluate the expression of the target genes of wild-type S. mutans when L-ascorbate was used as the sole carbohydrate source. The OD₆₀₀ values of the wild type, deficient, and complemented strains were continuously monitored, and their growth curves were constructed to compare growth capacity.
RESULTSPolymerase chain reaction and sequencing analyses suggested that deficient and complemented strains were successfully constructed. The expression levelsof ptxA and ptxB significantly increased (P < 0.01) when L-ascorbate was used as the sole carbohydrate source. The growth capacity of the deficient mutants decreased compared with that of the wild-type strain. However, the wild-type phenotype could be restored in the complemented strain.
CONCLUSIONptxA and ptxB genes are associated with L-ascorbate metabolism of S. mutans. The construction of deficient strains and complemented strain lay a foundation for further mechanism study on L-ascorbate metabolism in S. mutans.
Bacterial Proteins ; genetics ; Genes, Bacterial ; Phosphotransferases ; metabolism ; Real-Time Polymerase Chain Reaction ; Streptococcus mutans ; physiology ; Transcription Factors ; genetics