1.Extraction of mitochondrial DNA from tooth dentin: application of two techniques
Ahmad Azlina a,b* ; Berahim Zurairah a ; Sidek Mohamad Ros b ; Mokhtar Khairani Idah a ; Samsudin Abdul Rani c
Archives of Orofacial Sciences 2011;6(1):9-14
Mitochondrial DNA (mtDNA) is a hereditary material
located in mitochondria and is normally maternally inherited.
Mutational analysis performed on mtDNA proved that the
mutations are closely related with a number of genetic
illnesses, besides being exploitable for forensic identification.
Those findings imply the importance of mtDNA in the scientific
field. MtDNA can be found in abundance in tooth dentin where
it is kept protected by the enamel, the hardest outer part of the
tooth. In this study, two techniques of mtDNA extraction were
compared to determine the efficacy between the two
techniques. Teeth used for the study was collected from Dental
Clinic, Hospital Universiti Sains Malaysia. After the removal of
tooth from the tooth socket of the patient, the tooth was kept at
-20C until use. Later, pulp tissue and enamel was excised
using dental bur and only the root dentin was utilized for the
isolation of mtDNA by crushing it mechanically into powdered
form. MtDNA was extracted using the two published methods,
Pfeifer and Budowle and then subjected to spectrophotometry
DNA quantification and purity, Polymerase chain reaction
(PCR) amplification of hypervariable-two region of mtDNA,
followed by DNA sequencing to analyze the reliability of the
extraction techniques. In conclusion, both techniques proved to
be efficient and capable for the extraction of mtDNA from tooth
dentin.
2.Dystrophin gene analysis in Duchenne/Becker dystrophy in a Malaysian population using multiplex polymerase chain reaction
Jin-Ai Mary Anne Tan ; James Hsian-Meng Chan B ; Kim-Lian Tan ; Azlina Ahmad Annuar ; Moon-Keen Lee ; Khean-Jin Goh ; Kum-Thong Wong
Neurology Asia 2010;15(1):19-25
Dystrophinopathy is the commonest form of muscular dystrophy and comprises clinically recognized
forms, Duchenne dystrophy and Becker dystrophy. Mutations in the dystrophin gene which consist of
large gene deletions (65%), duplications (5%) and point mutations (30%) are responsible for reducing
the amount of functional dystrophin protein in skeletal muscle fi bres leading to fi bre destruction and
disease. The aims of this study are to investigate the detection rate, types and distribution of large
gene deletions in Malaysian dystrophinopathy patients using the multiplex polymerase chain reaction
(MPCR). MPCR of 18 “hot-spot deletion” regions along the dystrophin gene was performed on DNA
from 48 muscle biopsy-confi rmed cases of dystrophinopathy. A positive detection rate of 58% (28/48)
was observed, where 84% (16/19) Indian, 35% (6/17) Chinese and 50% (6/12) Malay ethnic groups
showed deletions in their dystrophin genes. The Malaysian Indians appear to have a higher prevalence
for large gene deletions compared to the Chinese and Malays. Further analyses of 42 confi rmed
positive cases (present 28 plus previous 14 cases) by MPCR showed the majority of deletions were
in the mid-distal region of the dystrophin gene (81% in exons 45-60). The MPCR is a specifi c and
sensitive method for confi rmation of gene deletions responsible for dystrophinopathy.
3.Dental Anomalies and Muscle Segment Homeobox1 Gene Polymorphism in Nonsyndromic Cleft Lip with or without Palate Children
Amel Elduhrahman B Elgali ; Normastura Abd Rahman ; Azlina Ahmad ; Norliana Ghazali
Annals of Dentistry 2023;30(No.1):22-28
This study aims to determine the prevalence of dental anomalies and MSX1 gene 799G>T polymorphism and
its association with non-syndromic cleft lip with or without palate (NSCLP) attending Hospital Universiti Sains
Malaysia. Clinical and radiological assessments on 37 NSCL±P patients and 80 non-cleft children were done to
detect dental anomalies. The buccal cells were collected and polymerase chain reaction restriction fragment
length polymorphism (PCR-RFLP) was used to identify polymorphism. NSCL±P was higher among males (54%)
and mostly unilateral cleft lip and palate (51.3%). The prevalence of dental anomalies in morphology in NSCL±P
was 18.9% (95% CI: 5.7%, 32.2%) and non-cleft was 6.3% (95% CI: 0.8%, 11.7%). Hypodontia in NSCLP was
75% (95% CI: 61.2%, 90.2%) and non-cleft was 7.5% (95% CI: 1.6%, 13.4%). There was a significant association
between NSCLP and anomalies in morphology (P= 0.04; OR=3.5)) and number (P< 0.01; OR= 40). There was
an absence of rare 799G>T polymorphism in all NSCL±P and non-cleft children indicating that all samples
contain common 799G polymorphism. In conclusion, the prevalence of dental anomalies in morphology and
number was significantly higher in NSCL±P compared to non-cleft children. However, it was not significantly
associated with MSX1 799G>T polymorphism.
4.Personalised management of Chronic Obstructive Pulmonary Disease (COPD): Malaysian consensus algorithm for appropriate use of inhaled corticosteroid (ICS) in COPD patients
Nurhayati Mohd Marzuki ; Mat Zuki Mat Jaeb ; Andrea Ban ; Ahmad Izuanuddin Ismail ; Irfhan Ali Hyder Ali ; Mohd Razali Norhaya ; Azlina Samsudin ; Mona Zaria Nasaruddin ; Rozanah Abd Rahman ; Mohd Arif Mohd Zim ; Razul Md. Nazri B Md Kassim ; Yoke Fong Lam ; Aishah Ibrahim ; Noor Aliza Mohd Tarekh ; Sandip Vasantrao Kapse
The Medical Journal of Malaysia 2020;75(6):717-721
Background: Regarding the long-term safety issues with the
use of inhaled corticosteroids (ICS) and the clinical
predominance of dual bronchodilators in enhancing
treatment outcomes in chronic obstructive pulmonary
disease (COPD), ICS is no longer a “preferred therapy”
according to the Global Initiative for Chronic Obstructive
Lung Disease except on top of a dual bronchodilator. This
has necessitated a change in the current therapy for many
COPD patients.
Objective: To determine a standardised algorithm to
reassess and personalise the treatment COPD patients
based on the available evidence.
Methods: A consensus statement was agreed upon by a
panel of pulmonologists in from 11 institutes in Malaysia
whose members formed this consensus group.
Results: According to the consensus, which was
unanimously adopted, all COPD patients who are currently
receiving an ICS-based treatment should be reassessed
based on the presence of co-existence of asthma or high
eosinophil counts and frequency of moderate or severe
exacerbations in the previous 12 months. When that the
patients meet any of the aforementioned criteria, then the
patient can continue taking ICS-based therapy. However, if
the patients do not meet the criteria, then the treatment of
patients need to be personalised based on whether the
patient is currently receiving long-acting beta-agonists
(LABA)/ICS or triple therapy.
Conclusion: A flowchart of the consensus providing a
guidance to Malaysian clinicians was elucidated based on
evidences and international guidelines that identifies the
right patients who should receive inhaled corticosteroids
and enable to switch non ICS based therapies in patients
less likely to benefit from such treatments.