1.Development and evaluation of a multiplex PCR assay for simultaneous detection of Flavobacterium psychrophilum, Yersinia ruckeri and Aeromonas salmonicida subsp. salmonicida in culture fisheries.
Ertan Emek ONUK ; Alper CIFTCI ; Arzu FINDIK ; Yuksel DURMAZ
Journal of Veterinary Science 2010;11(3):235-241
Bacterial cold water disease, enteric red mouth disease and frunculosis are the common bacterial diseases of fish worldwide. The etiologic agents of these diseases are Flavobacterium (F.) psychrophilum, Yersinia (Y.) ruckeri and Aeromonas (A.) salmonicida subsp. salmonicida, respectively. In this study, a multiplex polymerase chain reaction (m-PCR) method with YER8/10-Fer3/4-FP1/3 primer pairs which can identify these fish pathogens simultaneously was developed and optimized. In optimized conditions, neither false specific nor nonspecific amplification occurred. The detection limits of the m-PCR method using DNA extracts from dilutions of pure cultures of bacteria were 35 pg for Y. ruckeri and F. psychrophilum and 70 pg for A. salmonicida subsp. salmonicida. It was determined that 15 CFU Y. ruckeri and F. psychrophilum and 30 CFU A. salmonicida subsp. salmonicida could be detected by m-PCR developed using genomic DNA extracted from dilutions of the suspensions. The detection limits in the presence of tissue debris were 125 CFU for Y. ruckeri and F. psychrophilum and 250 CFU for A. salmonicida subsp. salmonicida. In conclusion, we submit that the m-PCR method developed and optimized in this study can be used for accurate and rapid identification of these bacteria.
Aeromonas salmonicida/*genetics
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Animals
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DNA Primers/genetics
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Fish Diseases/*diagnosis/*microbiology
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Fishes
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Flavobacterium/*genetics
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Gram-Negative Bacterial Infections/diagnosis/*veterinary
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Polymerase Chain Reaction/methods/*veterinary
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Yersinia rucker/*genetics
2.Molecular characterization of tetracycline- and quinolone-resistant Aeromonas salmonicida isolated in Korea.
Ji Hyung KIM ; Sun Young HWANG ; Jee Soo SON ; Jee Eun HAN ; Jin Woo JUN ; Sang Phil SHIN ; Casiano CHORESCA ; Yun Jaie CHOI ; Yong Ho PARK ; Se Chang PARK
Journal of Veterinary Science 2011;12(1):41-48
The antibiotic resistance of 16 Aeromonas (A.) salmonicida strains isolated from diseased fish and environmental samples in Korea from 2006 to 2009 were investigated in this study. Tetracycline or quinolone resistance was observed in eight and 16 of the isolates, respectively, based on the measured minimal inhibitory concentrations. Among the tetracycline-resistant strains, seven of the isolates harbored tetA gene and one isolate harbored tetE gene. Additionally, quinolone-resistance determining regions (QRDRs) consisting of the gyrA and parC genes were amplified and sequenced. Among the quinolone-resistant A. salmonicida strains, 15 harbored point mutations in the gyrA codon 83 which were responsible for the corresponding amino acid substitutions of Ser83-->Arg83 or Ser83-->Asn83. We detected no point mutations in other QRDRs, such as gyrA codons 87 and 92, and parC codons 80 and 84. Genetic similarity was assessed via pulsed-field gel electrophoresis, and the results indicated high clonality among the Korean antibiotic-resistant strains of A. salmonicida.
Aeromonas salmonicida/classification/*drug effects/*genetics/i
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Animals
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Anti-Bacterial Agents/*pharmacology
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Bacterial Proteins/genetics
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*Drug Resistance, Bacterial
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Environment
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Fish Diseases/*microbiology
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Fishes
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Gram-Negative Bacterial Infections/microbiology/*veterinary
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Microbial Sensitivity Tests
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Point Mutation
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Polymerase Chain Reaction
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Quinolones/*pharmacology
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Republic of Korea
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Sequence Analysis
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Tetracycline/*pharmacology
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Tetracycline Resistance