1.Structural and biochemical characterization of DAXX-ATRX interaction.
Zhuang LI ; Dan ZHAO ; Bin XIANG ; Haitao LI
Protein & Cell 2017;8(10):762-766
2.Regulatory effect of Vav1 on T cells and its relation to clinical diseases.
Journal of Zhejiang University. Medical sciences 2018;47(1):75-81
Vav1, as a key downstream signaling molecule of T cell receptor, includes a catalytic core DH-PH-ZF domain with the function as guanine nucleotide exchange factor (GEF), and a SH3-SH2-SH3 domain with the function as adaptor protein. These two structures of Vav1 play different roles in the development, activation, proliferation and function of T cells, and thereby exert the different regulatory effect on the occurrence and development of autoimmune disease, graft rejection, cancer and other clinical conditions, implicating that Vav1 might be a potential therapeutic target for these diseases. This paper reviews the role of Vav1 in T cells and the occurrence of related diseases.
Adaptor Proteins, Signal Transducing
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Animals
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Autoimmune Diseases
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genetics
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physiopathology
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Humans
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Neoplasms
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genetics
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physiopathology
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Proto-Oncogene Proteins c-vav
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chemistry
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immunology
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metabolism
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T-Lymphocytes
3.Functional proteomics, human genetics and cancer biology of GIPC family members.
Experimental & Molecular Medicine 2013;45(6):e26-
GIPC1, GIPC2 and GIPC3 consist of GIPC homology 1 (GH1) domain, PDZ domain and GH2 domain. The regions around the GH1 and GH2 domains of GIPC1 are involved in dimerization and interaction with myosin VI (MYO6), respectively. The PDZ domain of GIPC1 is involved in interactions with transmembrane proteins [IGF1R, NTRK1, ADRB1, DRD2, TGFbetaR3 (transforming growth factorbeta receptor type III), SDC4, SEMA4C, LRP1, NRP1, GLUT1, integrin alpha5 and VANGL2], cytosolic signaling regulators (APPL1 and RGS19) and viral proteins (HBc and HPV-18 E6). GIPC1 is an adaptor protein with dimerizing ability that loads PDZ ligands as cargoes for MYO6-dependent endosomal trafficking. GIPC1 is required for cell-surface expression of IGF1R and TGFbetaR3. GIPC1 is also required for integrin recycling during cell migration, angiogenesis and cytokinesis. On early endosomes, GIPC1 assembles receptor tyrosine kinases (RTKs) and APPL1 for activation of PI3K-AKT signaling, and G protein-coupled receptors (GPCRs) and RGS19 for attenuation of inhibitory Galpha signaling. GIPC1 upregulation in breast, ovarian and pancreatic cancers promotes tumor proliferation and invasion, whereas GIPC1 downregulation in cervical cancer with human papillomavirus type 18 infection leads to resistance to cytostatic transforming growth factorbeta signaling. GIPC2 is downregulated in acute lymphocytic leukemia owing to epigenetic silencing, while Gipc2 is upregulated in estrogen-induced mammary tumors. Somatic mutations of GIPC2 occur in malignant melanoma, and colorectal and ovarian cancers. Germ-line mutations of the GIPC3 or MYO6 gene cause nonsyndromic hearing loss. As GIPC proteins are involved in trafficking, signaling and recycling of RTKs, GPCRs, integrins and other transmembrane proteins, dysregulation of GIPCs results in human pathologies, such as cancer and hereditary deafness.
Adaptor Proteins, Signal Transducing/chemistry/genetics/*metabolism
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Amino Acid Sequence
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Evolution, Molecular
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Humans
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Molecular Sequence Data
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*Multigene Family
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Neoplasms/*genetics
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Protein Binding
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*Proteomics
4.Crystal structure and functional implication of the RUN domain of human NESCA.
Qifan SUN ; Chuanhui HAN ; Lan LIU ; Yizhi WANG ; Hongyu DENG ; Lin BAI ; Tao JIANG
Protein & Cell 2012;3(8):609-617
NESCA, a newly discovered signaling adapter protein in the NGF-pathway, contains a RUN domain at its N-terminus. Here we report the crystal structure of the NESCA RUN domain determined at 2.0-Å resolution. The overall fold of the NESCA RUN domain comprises nine helices, resembling the RUN domain of RPIPx and the RUN1 domain of Rab6IP1. However, compared to the other RUN domains, the RUN domain of NESCA has significantly different surface electrostatic distributions at the putative GTPase-interacting interface. We demonstrate that the RUN domain of NESCA can bind H-Ras, a downstream signaling molecule of TrkA, with high affinity. Moreover, NESCA RUN can directly interact with TrkA. These results provide new insights into how NESCA participates in the NGF-TrkA signaling pathway.
Adaptor Proteins, Signal Transducing
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chemistry
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genetics
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metabolism
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Amino Acid Sequence
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Binding Sites
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Crystallography, X-Ray
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Gene Expression
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Humans
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Models, Molecular
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Molecular Sequence Data
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Nerve Growth Factor
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chemistry
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genetics
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metabolism
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Oncogene Protein p21(ras)
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chemistry
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genetics
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metabolism
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Protein Binding
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Protein Structure, Tertiary
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Receptor, trkA
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chemistry
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genetics
;
metabolism
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Recombinant Proteins
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chemistry
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genetics
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metabolism
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Sequence Homology, Amino Acid
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Signal Transduction
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rab GTP-Binding Proteins
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chemistry
5.Preparation and detection of phosphorylated PRAS40 (Ser183) polyclonal antibody.
Hao WEI ; Bei HUANG ; Changzhi XU ; Zhuxia ZHENG ; Yu BAI
Chinese Journal of Biotechnology 2009;25(7):1049-1054
PRAS40 (proline-rich Akt substrate 40 kD) associates with mammalian target of rapamycin complex 1(mTORC1), serine 183 site (Ser183) of PRAS40 can be phosphorylated by mTORC1. To prepare the phosphorylated PRAS40 (Ser183) antibody, We chosen 10-amino acid including Ser183 as antigen peptide through antigenicity and hydrophobicity analysis, hinged on keyhole limpet hemocyanin (KLH), and used the KLH-peptide to immunize rabbits. After antibody serum titer detection by enzyme linked immunosorbent assay (ELISA), the antibody was purified with rProtein A sepharose fast flow and dephosphorylated antigen membrane. The antibody titrate reached 1:10 000 after purification and its special property was enhanced with absorption treatment of dephosphorylated antigen membrane. In addition, we used rabbit anti-PRAS40 antibody and the phosphorylated PRAS40 (Ser183) antibody to detect PRAS40 expression in several cell lines, including the normal cells HL7702, HEK293, tumor cells HepG2, A549 and S180. There were no quite difference among these cells; otherwise, we observed the decreased phosphorylation level of Ser183 after amino acid withdrawal treatment. Therefore, the polyclonal phosphorylated PRAS40 (Ser183) antibody was specific to PRAS40 (Ser183) site and could be used for the function study of PRAS40.
Adaptor Proteins, Signal Transducing
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Animals
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Antibodies
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analysis
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Cell Line, Tumor
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Humans
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Male
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Mechanistic Target of Rapamycin Complex 1
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Multiprotein Complexes
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Phosphoproteins
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chemistry
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immunology
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Proteins
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genetics
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metabolism
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Proto-Oncogene Proteins c-akt
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metabolism
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Rabbits
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Serine
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metabolism
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TOR Serine-Threonine Kinases
6.Mutation analysis of large tumor suppressor genes LATS1 and LATS2 supports a tumor suppressor role in human cancer.
Tian YU ; John BACHMAN ; Zhi-Chun LAI
Protein & Cell 2015;6(1):6-11
In recent years, human cancer genome projects provide unprecedented opportunities for the discovery of cancer genes and signaling pathways that contribute to tumor development. While numerous gene mutations can be identified from each cancer genome, what these mutations mean for cancer is a challenging question to address, especially for those from less understood putative new cancer genes. As a powerful approach, in silico bioinformatics analysis could efficiently sort out mutations that are predicted to damage gene function. Such an analysis of human large tumor suppressor genes, LATS1 and LATS2, has been carried out and the results support a role of hLATS1//2 as negative growth regulators and tumor suppressors.
Adaptor Proteins, Signal Transducing
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chemistry
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metabolism
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Animals
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Carrier Proteins
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chemistry
;
metabolism
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Computational Biology
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Genes, Neoplasm
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Humans
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LIM Domain Proteins
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chemistry
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metabolism
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Mice
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Mutation
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Neoplasms
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genetics
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pathology
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Phosphoproteins
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chemistry
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metabolism
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Phosphorylation
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Protein Binding
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Protein Structure, Tertiary
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Protein-Serine-Threonine Kinases
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chemistry
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genetics
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metabolism
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Transferases (Other Substituted Phosphate Groups)
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chemistry
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metabolism
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Tumor Suppressor Proteins
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chemistry
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genetics
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metabolism
7.Interaction between Parasitophorous Vacuolar Membraneassociated GRA3 and Calcium Modulating Ligand of Host Cell Endoplasmic Reticulum in the Parasitism of Toxoplasma gondii.
Ji Yeon KIM ; Hye Jin AHN ; Kyung Ju RYU ; Ho Woo NAM
The Korean Journal of Parasitology 2008;46(4):209-216
A monoclonal antibody against Toxoplasma gondii of Tg556 clone (Tg556) blotted a 29 kDa protein, which was localized in the dense granules of tachyzoites and secreted into the parasitophorous vacuolar membrane (PVM) after infection to host cells. A cDNA fragment encoding the protein was obtained by screening a T. gondii cDNA expression library with Tg556, and the full-length was completed by 5'-RACE of 2,086 bp containing an open reading frame (ORF) of 669 bp. The ORF encoded a polypeptide of 222 amino acids homologous to the revised GRA3 but not to the first reported one. The polypeptide has 3 hydrophobic moieties of an N-terminal stop transfer sequence and 2 transmembrane domains (TMD) in posterior half of the sequence, a cytoplasmic localization motif after the second TMD and an endoplasmic reticulum (ER) retrival motif in the C-terminal end, which suggests GRA3 as a type III transmembrane protein. With the ORF of GRA3, yeast two-hybrid assay was performed in HeLa cDNA expression library, which resulted in the interaction of GRA3 with calcium modulating ligand (CAMLG), a type II transmembrane protein of ER. The specific binding of GRA3 and CAMLG was confirmed by glutathione S-transferase (GST) pull-down and immunoprecipitation assays. The localities of fluorescence transfectionally expressed from GRA3 and CAMLG plasmids were overlapped completely in HeLa cell cytoplasm. In immunofluorescence assay, GRA3 and CAMLG were shown to be co-localized in the PVM of host cells. Structural binding of PVM-inserted GRA3 to CAMLG of ER suggested the receptor-ligand of ER recruitment to PVM during the parasitism of T. gondii.
Adaptor Proteins, Signal Transducing/*metabolism
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Amino Acid Sequence
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Animals
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Endoplasmic Reticulum/*metabolism
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Hela Cells
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Host-Parasite Interactions
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Humans
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Molecular Sequence Data
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Protozoan Proteins/chemistry/genetics/*metabolism
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Toxoplasma/*physiology
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Toxoplasmosis/metabolism/parasitology
8.Structural and biochemical studies of RIG-I antiviral signaling.
Miao FENG ; Zhanyu DING ; Liang XU ; Liangliang KONG ; Wenjia WANG ; Shi JIAO ; Zhubing SHI ; Mark I GREENE ; Yao CONG ; Zhaocai ZHOU
Protein & Cell 2013;4(2):142-154
Retinoic acid-inducible gene I (RIG-I) is an important pattern recognition receptor that detects viral RNA and triggers the production of type-I interferons through the downstream adaptor MAVS (also called IPS-1, CARDIF, or VISA). A series of structural studies have elaborated some of the mechanisms of dsRNA recognition and activation of RIG-I. Recent studies have proposed that K63-linked ubiquitination of, or unanchored K63-linked polyubiquitin binding to RIG-I positively regulates MAVS-mediated antiviral signaling. Conversely phosphorylation of RIG-I appears to play an inhibitory role in controlling RIG-I antiviral signal transduction. Here we performed a combined structural and biochemical study to further define the regulatory features of RIG-I signaling. ATP and dsRNA binding triggered dimerization of RIG-I with conformational rearrangements of the tandem CARD domains. Full length RIG-I appeared to form a complex with dsRNA in a 2:2 molar ratio. Compared with the previously reported crystal structures of RIG-I in inactive state, our electron microscopic structure of full length RIG-I in complex with blunt-ended dsRNA, for the first time, revealed an exposed active conformation of the CARD domains. Moreover, we found that purified recombinant RIG-I proteins could bind to the CARD domain of MAVS independently of dsRNA, while S8E and T170E phosphorylation-mimicking mutants of RIG-I were defective in binding E3 ligase TRIM25, unanchored K63-linked polyubiquitin, and MAVS regardless of dsRNA. These findings suggested that phosphorylation of RIG inhibited downstream signaling by impairing RIG-I binding with polyubiquitin and its interaction with MAVS.
Adaptor Proteins, Signal Transducing
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metabolism
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Adenosine Triphosphate
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metabolism
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DEAD Box Protein 58
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DEAD-box RNA Helicases
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chemistry
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genetics
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metabolism
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Dimerization
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Humans
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Mutagenesis, Site-Directed
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Phosphorylation
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Polyubiquitin
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metabolism
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Protein Binding
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Protein Structure, Tertiary
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RNA, Double-Stranded
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metabolism
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Recombinant Proteins
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biosynthesis
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chemistry
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genetics
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Signal Transduction
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Transcription Factors
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metabolism
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Tripartite Motif Proteins
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Ubiquitin-Protein Ligases
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metabolism
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Ubiquitination
9.Heat shock cognate 71 (HSC71) regulates cellular antiviral response by impairing formation of VISA aggregates.
Zhigang LIU ; Shu-Wen WU ; Cao-Qi LEI ; Qian ZHOU ; Shu LI ; Hong-Bing SHU ; Yan-Yi WANG
Protein & Cell 2013;4(5):373-382
In response to viral infection, RIG-I-like RNA helicases detect viral RNA and signal through the mitochondrial adapter protein VISA. VISA activation leads to rapid activation of transcription factors IRF3 and NF-κB, which collaborate to induce transcription of type I interferon (IFN) genes and cellular antiviral response. It has been demonstrated that VISA is activated by forming prion-like aggregates. However, how this process is regulated remains unknown. Here we show that overexpression of HSC71 resulted in potent inhibition of virus-triggered transcription of IFNB1 gene and cellular antiviral response. Consistently, knockdown of HSC71 had opposite effects. HSC71 interacted with VISA, and negatively regulated virus-triggered VISA aggregation. These findings suggest that HSC71 functions as a check against VISA-mediated antiviral response.
Adaptor Proteins, Signal Transducing
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biosynthesis
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chemistry
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genetics
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metabolism
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Cell Aggregation
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genetics
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GPI-Linked Proteins
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metabolism
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Gene Knockdown Techniques
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HEK293 Cells
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HSC70 Heat-Shock Proteins
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genetics
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metabolism
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Heat-Shock Response
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genetics
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Humans
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Interferon Regulatory Factor-3
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genetics
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metabolism
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Interferon-beta
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genetics
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NF-kappa B
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genetics
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Prions
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metabolism
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Receptors, Retinoic Acid
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metabolism
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Viruses
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drug effects
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metabolism
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pathogenicity
10.Effect of different tags on pulldown assays implemented by LMO2 fusion protein.
Wei YUAN ; Wei SUN ; Shuang YANG ; Jidong YAN ; Chunli ZHAI ; Jun DU ; Zhaoqi WANG ; Di AN ; Tianhui ZHU
Chinese Journal of Biotechnology 2008;24(5):887-891
Pulldown assay is an in vitro method for studies of protein-protein interactions, in which tagged proteins are usually expressed as the bait to enrich other proteins that could bind to them. In this technology, the GST tag is broadest used for its modest size and hydrophilic property. In most cases, the GST tag could increase the hydrophility of the fusion protein and help to avoid the formation of inclusion bodies. However, in the other few cases, the target protein may be strongly hydrophobic or have complicated structures that were hard to fold and assemble in correct conformations without champerons, and even the existence of GST tag could not make them soluble. These proteins were always expressed as inclusion bodies and had no functions. LMO2 was a small molecular weight and insoluble protein, in this study, GST system and MBP system were used to express GST-LMO2 and MBP-LMO2 fusion proteins, respectively. We found that GST-LMO2 fusion protein was expressed as inclusion bodies whereas MBP-LMO2 fusion protein was expressed in soluble form. Moreover, the production rate of MBP-LMO2 was also much higher than GST-LMO2. Then MBP-LMO2 fusion proteins and renatured GST-LMO2 fusion proteins were used as bait in pulldown assay to study the interaction between LMO2 and endogenous GATA1 in K562 cells. Western blot analyses showed that both of these proteins could bind to endogenous GATA1 in K562 cells, but recovered GATA1 protein by MBP-LMO2 fusion protein was much more than GST-LMO2 fusion protein. These results suggest that using of MBP system is a helpful attempt in the case of studying small molecular weight, strong hydrophobic proteins.
Adaptor Proteins, Signal Transducing
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Carrier Proteins
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chemistry
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Chemical Precipitation
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DNA-Binding Proteins
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chemistry
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GATA1 Transcription Factor
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chemistry
;
Genetic Vectors
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Glutathione Transferase
;
chemistry
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Humans
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K562 Cells
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LIM Domain Proteins
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Maltose-Binding Proteins
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Metalloproteins
;
chemistry
;
Protein Binding
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Protein Interaction Domains and Motifs
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Protein Renaturation
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Proto-Oncogene Proteins
;
chemistry
;
Recombinant Fusion Proteins
;
genetics
;
metabolism