1.Identification of Acinetobacter Species Using Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.
Seri JEONG ; Jun Sung HONG ; Jung Ok KIM ; Keon Han KIM ; Woonhyoung LEE ; Il Kwon BAE ; Kyungwon LEE ; Seok Hoon JEONG
Annals of Laboratory Medicine 2016;36(4):325-334
BACKGROUND: Acinetobacter baumannii has a greater clinical impact and exhibits higher antimicrobial resistance rates than the non-baumannii Acinetobacter species. Therefore, the correct identification of Acinetobacter species is clinically important. Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry (MS) has recently become the method of choice for identifying bacterial species. The purpose of this study was to evaluate the ability of MALDI-TOF MS (Bruker Daltonics GmbH, Germany) in combination with an improved database to identify various Acinetobacter species. METHODS: A total of 729 Acinetobacter clinical isolates were investigated, including 447 A. baumannii, 146 A. nosocomialis, 78 A. pittii, 18 A. ursingii, 9 A. bereziniae, 9 A. soli, 4 A. johnsonii, 4 A. radioresistens, 3 A. gyllenbergii, 3 A. haemolyticus, 2 A. lwoffii, 2 A. junii, 2 A. venetianus, and 2 A. genomospecies 14TU. After 212 isolates were tested with the default Bruker database, the profiles of 63 additional Acinetobacter strains were added to the default database, and 517 isolates from 32 hospitals were assayed for validation. All strains in this study were confirmed by rpoB sequencing. RESULTS: The addition of the 63 Acinetobacter strains' profiles to the default Bruker database increased the overall concordance rate between MALDI-TOF MS and rpoB sequencing from 69.8% (148/212) to 100.0% (517/517). Moreover, after library modification, all previously mismatched 64 Acinetobacter strains were correctly identified. CONCLUSIONS: MALDI-TOF MS enables the prompt and accurate identification of clinically significant Acinetobacter species when used with the improved database.
Acinetobacter Infections/*microbiology/pathology
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Acinetobacter baumannii/*chemistry/classification/isolation & purification
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Bacterial Proteins/chemistry/genetics/metabolism
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Databases, Factual
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Humans
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Phylogeny
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RNA, Ribosomal, 16S/chemistry/genetics/metabolism
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*Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
2.Healthcare-associated Pneumonia: Clinical Features and Retrospective Analysis Over 10 Years.
Fei QI ; Guo-Xin ZHANG ; Dan-Yang SHE ; Zhi-Xin LIANG ; Ren-Tao WANG ; Zhen YANG ; Liang-An CHEN ; Jun-Chang CUI
Chinese Medical Journal 2015;128(20):2707-2713
BACKGROUNDHealthcare-associated pneumonia (HCAP) is associated with drug-resistant pathogens and high mortality, and there is no clear evidence that this is due to inappropriate antibiotic therapy. This study was to elucidate the clinical features, pathogens, therapy, and outcomes of HCAP, and to clarify the risk factors for drug-resistant pathogens and prognosis.
METHODSRetrospective observational study among hospitalized patients with HCAP over 10 years. The primary outcome was 30-day all-cause hospital mortality after admission. Demographics (age, gender, clinical features, and comorbidities), dates of admission, discharge and/or death, hospitalization costs, microbiological results, chest imaging studies, and CURB-65 were analyzed. Antibiotics, admission to Intensive Care Unit (ICU), mechanical ventilation, and pneumonia prognosis were recorded. Patients were dichotomized based on CURB-65 (low- vs. high-risk).
RESULTSAmong 612 patients (mean age of 70.7 years), 88.4% had at least one comorbidity. Commonly detected pathogens were Acinetobacter baumannii, Pseudomonas aeruginosa, and coagulase-negative staphylococci. Initial monotherapy with β-lactam antibiotics was the most common initial therapy (50%). Mean age, length of stay, hospitalization expenses, ICU admission, mechanical ventilation use, malignancies, and detection rate for P. aeruginosa, and Staphylococcus aureus were higher in the high-risk group compared with the low-risk group. CURB-65 ≥3, malignancies, and mechanical ventilation were associated with an increased mortality. Logistic regression analysis showed that cerebrovascular diseases and being bedridden were independent risk factors for HCAP.
CONCLUSIONInitial treatment of HCAP with broad-spectrum antibiotics could be an appropriate approach. CURB-65 ≥3, malignancies, and mechanical ventilation may result in an increased mortality.
Acinetobacter baumannii ; pathogenicity ; Aged ; Anti-Bacterial Agents ; therapeutic use ; Community-Acquired Infections ; drug therapy ; microbiology ; pathology ; Female ; Hospital Mortality ; Hospitalization ; Humans ; Male ; Middle Aged ; Pneumonia ; drug therapy ; microbiology ; pathology ; Pseudomonas aeruginosa ; pathogenicity ; Retrospective Studies ; Staphylococcus aureus ; pathogenicity
3.Use of Delta Neutrophil Index for Differentiating Low-Grade Community-Acquired Pneumonia From Upper Respiratory Infection.
Hyunjung KIM ; Yonggoo KIM ; Kwan Hyoung KIM ; Chang Dong YEO ; Jin Woo KIM ; Hae Kyung LEE
Annals of Laboratory Medicine 2015;35(6):647-650
No abstract available.
Acinetobacter baumannii/isolation & purification
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Adult
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Aged
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Aged, 80 and over
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Area Under Curve
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C-Reactive Protein/analysis
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Community-Acquired Infections/*diagnosis/microbiology/pathology
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Female
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Humans
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Klebsiella pneumoniae/isolation & purification
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Leukocyte Count
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Male
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Middle Aged
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Neutrophils/*cytology
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Pneumonia/*diagnosis/microbiology/pathology
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ROC Curve
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Respiratory Tract Infections/*diagnosis/microbiology/pathology
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Severity of Illness Index
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Staphylococcus aureus/isolation & purification
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Streptococcus pneumoniae/isolation & purification