1.Diagnosis value of prenatal placental adhesive disorders with MRI and transabdominal sonography
Min TANG ; Zhiqian MIN ; Xin ZHANG ; Kaie SHE ; Liang MU ; Yanhua GAO ; Xiaoling ZHANG
Chongqing Medicine 2017;46(4):456-458
Objective To investigate the diagnostic value of using magnetic resonance imaging (MRI) and transabdominal sonography in antenatal placental adhesive disorders,to provide a theoretical basis for choosing different delivery ways.Methods 75 patients were assessed the placenta structure with MRI and transabdominal sonography.The patients were divided into two groups according placenta in the anterior and posterior uterus(41 cases in anterior group,34 cases in posterior group).Observed relationship between placenta and myometrium,compared imaging finding with pathological or clinical results.Results The sensitivity in diagnosis of placenta in the anterior uterine group was 75.0% with MRI and 95.0% for transabdominal Sonography (P< 0.05).The specificity was 90.1 % with MRI and 80.9 % for transabdominal sonography (P>0.05).The sensitivity in diagnosis of placenta in the posterior uterine group was 95.8% with MRI and 66.7 % for transabdominal Sonography(P<0.05).The specificity was 90.0% with MRI and 70.0% for sonography (P<0.05).There were significantly difference the imaging feature of uterine bulging,increased subplacental vascularity and dark intraplacental bands on T2-weighted images in placenta accrete group and nonplacenta accretegroup (P>0.05).Conclusion Both sonography and MRI have fairly good sensitivity and imaging features for prenatal diagnosis of placenta accrete.Especially,MRI is an excellent tool for diagnosis of placenta accrete in the posterior uterine.
2.Construction of miRNA-29b1 knockout mice based on CRISPR/Cas9 technology
Yong ZHAO ; Changhong SHI ; Ya ZHAO ; Zhiqian XIN ; Peijuan LIU ; Caiqin ZHANG ; Bing BAI ; Jieying BAI ; Hua WANG ; Hai ZHANG
Chinese Journal of Comparative Medicine 2016;26(12):1-4
Objective To construct miRNA-29b1 gene knockout mice based on CRISPR/Cas9 technology. Methods To design and synthesize sgRNA according to the miRNA-29b1 sequence in Genbank .sgRNA and Cas9 were transcribed to RNA in vitro, these RNA were then microinjected into zygotes of C 57BL/6 mice.After mouse birth, the genome DNA was extracted and sequenced to identify its genotype; meanwhile , real-time PCR was used to assay the expression of miRNA-29b1 in the heart, liver, spleen, lung and kidney of mutated mice .Result A 20 bp sgRNA targeted on miRNA-29b1 was synthesized and transcribed to RNA with Cas 9.After microinjection, miRNA-29b1 gene-mutated mice were obtained.The sequencing results showed that there were two types of genotype for the mutated mice , one was 10 bp deletion, and another was 23 bp deletion accompanied with a 3 bp insertion.Compared with the wild-type mice, the expression of miRNA-29b1 in the heart, liver, spleen, lung and kidney was reduced significantly .Conclusions miRNA-29b1 gene knockout mice are constructed successfully by using CRISPR /Cas9 technology.
3.Diagnostic value of endoscopic ultrasonography in staging of rectal cancer
Jue WEI ; Jie SHEN ; Zhiqian HU ; Canping RUAN ; Xin ZENG ; Weifen XIE
Chinese Journal of Digestion 2018;38(3):177-181
Objective To evaluate the diagnostic value of endoscopic ultrasonography (EUS) in staging of rectal cancer (RC).Methods From January 2015 to January 2017,the clinical data of 204 patients with RC and received EUS and surgery were retrospectively analyzed.Patients were divided into surgery alone group (155 cases) and preoperative neoadjuvant chemoradiation therapy (CRT) plus surgery group (49 cases).The preoperative staging by EUS and postoperative pathological staging of two groups were compared.Kappa test was performed for statistical analysis.Results Compared with postoperative pathologic diagnosis,the accuracy rate of EUS in the evaluation of invasion depth of RC in surgery alone group was 81.9% (127/155),and the accuracy rates in the diagnosis of Tis,T1,T2,T3 and T4 were 3/4,11/13,82.1%(32/39),91.1%(41/45) and 74.1%(40/54),respectively,with a good consistency (kappa=0.751,P<0.01).However,the accuracy rate of EUS in the invasion depth of RC in CRT plus surgery group was 34.7% (17/49),and the accuracy rates in the diagnosis of T2,T3 and T4 were 1/13,2/7 and 14/16,respectively,with a poor consistency (kappa =0.107,P=0.850).Compared with postoperative pathologic diagnosis,the diagnostic accuracy rate of EUS in evaluating regional lymph node metastasis in surgery alone group was 70.3% (109/155),and the accuracies in the diagnosis of cases with or without regional lymph node metastasis were 40.7% (24/59) and 88.5% (85/96),respectively,with a poor consistency (kappa=0.317,P<0.01).The diagnostic accuracy rate of EUS in evaluating regional lymph node metastasis of preoperative CRT plus surgery group was 51.0% (25/49),and the accuracies in the diagnosis of cases with or without regional lymph node metastasis were 5/11 and 52.6% (20/38),respectively,with a poor consistency (kappa =0.014,P =0.911).Conclusions EUS can accurately evaluate the depth of tumor invasion and lymph node metastasis in preoperative staging of RC,which may be helpful for determining clinical treatment strategy.However,for patients received CRT treatment,EUS has a limited value in diagnosing and staging the tumor.
4.The application of MRI in diagnosis of secondary dysmenorrhea
Zhiqian MIN ; Tao WANG ; Xin ZHANG ; Xiaoling ZHANG ; Xiaoyan LEI ; Ming ZHANG
Journal of Practical Radiology 2017;33(11):1724-1727
Objective To evaluate the value of MRI in the diagnosis of secondary dysmenorrhea.Methods 96 cases of secondary dysmenorrhea confirmed by clinic were analyzed retrospectively.Organic diseases contributed to secondary dysmenorrhea were classified and the characteristics of MRI were analyzed.Results There were 53 cases of endometriosis(EM),22 cases of adenomyosis (AM),14 cases of genital malformations,5 cases of chronic pelvic inflammation and 2 cases of uterine leiomyoma.Conclusion MRI can search the etiology of secondary dysmenorrhea,which can be used as effective means of inspection for secondary dysmenorrhe.
5.The application of dynamic contrast enhanced MR with MIP in differentiating benign and malignant breast diseases
Xin ZHANG ; Zhiqian MIN ; Xiaoyan LEI ; Min TANG ; Dongsheng ZHANG
Journal of Practical Radiology 2018;34(1):35-38
Objective To study the effects of the different phases of breast dynamic contrast enhanced MR with 3D MIP in reconstruction of breast vascular.To explore the reconstruction parameters of breast vascular in benign and malignant breast lesions.Methods All of 132 female patients with pathologically confirmed breast disease were enrolled,including 50 cases of benign lesions and 82 malignant cases.All of them underwent high temporal resolution dynamic enhanced MR scanning,with each phase of 20 s.All of the images were reconstructed by 3D MIP and analyzed.Results In both of benign and malignant lesions,the display rate of the internal thoracic artery was higher than that of the lateral thoracic artery and intercostal artery.The display rate of grade Ⅱ vessels of internal thoracic artery and intercostal artery were higher in malignant lesion(P=0.035,0.000).The grade Ⅰ and Ⅱ vessels of the internal thoracic artery and the lateral thoracic artery increased gradually with time delay.The vascular branches were showed in malignant lesions earlier than those in benign lesions,in the 20th seconds in which grade Ⅰ vessels could be displayed,and in the 60th seconds,internal thoracic artery in malignant lesions(96.3%)can be clearly displayed.For benign lesions,grade Ⅰ branch of the internal thoracic artery in patients(80%)could be displayed in the 120th seconds.Conclusion Breast dynamic contrast enhanced MR with 3D MIP can be used to display the blood vessels of the breast,which is of great value in the diagnosis of breast diseases.To achieve the best display effect,different enhanced phases should be selected to reconstruct the blood vessels based on the different enhancement patterns in benign and malignant lesions.
6.Multi-omics Analysis of Primary Cell Culture Models Reveals Genetic and Epigenetic Basis of Intratumoral Phenotypic Diversity
Liu SIXUE ; Yang ZUYU ; Li GUANGHAO ; Li CHUNYAN ; Luo YANTING ; Gong QIANG ; Wu XIN ; Li TAO ; Zhang ZHIQIAN ; Xing BAOCAI ; Xu XIAOLAN ; Lu XUEMEI
Genomics, Proteomics & Bioinformatics 2019;17(6):576-589
Uncovering the functionally essential variations related to tumorigenesis and tumor pro-gression from cancer genomics data is still challenging due to the genetic diversity among patients, and extensive inter-and intra-tumoral heterogeneity at different levels of gene expression regulation, including but not limited to the genomic, epigenomic, and transcriptional levels. To minimize the impact of germline genetic heterogeneities, in this study, we establish multiple primary cultures from the primary and recurrent tumors of a single patient with hepatocellular carcinoma (HCC). Multi-omics sequencing was performed for these cultures that encompass the diversity of tumor cells from the same patient. Variations in the genome sequence, epigenetic modification, and gene expression are used to infer the phylogenetic relationships of these cell cultures. We find the discrepancy among the relationships revealed by single nucleotide variations (SNVs) and transcriptional/epigenomic pro-files from the cell cultures. We fail to find overlap between sample-specific mutated genes and differ-entially expressed genes (DEGs), suggesting that most of the heterogeneous SNVs among tumor stages or lineages of the patient are functionally insignificant. Moreover, copy number alterations (CNAs) and DNA methylation variation within gene bodies, rather than promoters, are significantly correlated with gene expression variability among these cell cultures. Pathway analysis of CNA/DNA methylation-related genes indicates that a single cell clone from the recurrent tumor exhibits distinct cellular characteristics and tumorigenicity, and such an observation is further confirmed by cellular experiments both in vitro and in vivo. Our systematic analysis reveals that CNAs and epigenomic changes, rather than SNVs, are more likely to contribute to the phenotypic diversity among subpop-ulations in the tumor. These findings suggest that new therapeutic strategies targeting gene dosage and epigenetic modification should be considered in personalized cancer medicine. This culture model may be applied to the further identification of plausible determinants of cancer metastasis and relapse.