1.Establishment and application of multiplex touchdown PCR for detection of extended-spectrum β-lactamases-producing Enterobacteriaceae and me-thicillin-resistant Staphylococcus aureus in bloodstream infection
Yanni BI ; Zhengeng SUI ; Yu SONG ; Yemin QU ; Shuqing MA ; Mei SUN ; Haizhu LIU
Chinese Journal of Infection Control 2015;(10):663-667
Objective To develop a multiplex touchdown PCR for simultaneous detection of extended-spectrum β-lactamases (ESBLs )-producing Enterobacteriaceae and methicillin-resistant Staphylococcus aureus (MRSA ). Methods Blood culture positive specimens from 102 hospitalized patients were collected between March 2013 and September 2014,four pairs of specific primers were designed based on SHV,TEM,and OXA genes of ESBLs-pro-ducing Enterobacteriaceae and MecA gene of MRSA,drug-resistant genes were amplified with single touchdown PCR and multiplex touchdown PCR, the results were compared with Kirby-Bauer disk diffusion method. Results Each single PCR amplified a specific band,four drug-resistant genes were also detected by multiplex touchdown PCR;the lower detection limits of multiplex touchdown PCR for DNA of MecA,SHV,TEM,and OXA were 4.37 ng,2.19 ng,4.53 ng,and 3.59 ng,respectively.Compared with Kirby-Bauer disk diffusion method, the overall sensitivity and specificity of multiplex touchdown PCR were 100.00% and 88.24% respectively,for ES-BLs were 100.00% and 87.23% respectively,for MRSA were both 100.00%.Conclusion A higher sensitivity and specificity multiple touchdown PCR assay has been developed,and it can be used in the rapid diagnosis and epidemi-ology investigation of bloodstream infection caused by ESBLs-producing Enterobacteriaceae and MRSA,and is help-ful for guiding antimicrobial use in clinic.
2.The changes of the coagulation indicators in the process of lymphoma patients with autologous blood stem cell transplantation
Jinhong JIANG ; Bingmu FANG ; Zhigang QU ; Yehui XU ; Yemin ZHOU ; Shuping LIU
Chinese Journal of Primary Medicine and Pharmacy 2013;20(7):969-970
Objective To explore the inflnence of autologous peripheral blood hematopoietic stem cell transplantation (auto-HSCT) for lymphoma process on the quality of patients blood coagulation.Methods Plasma samples were collected before the conditioning and on day 0,7,14,28,35 follow auto-HSCT from 20 patients.The following parameters were measured:prothrombin time (PT),activated partial thromboplastin time (APTT),fibrinogen (FIB) and D-dimer(D-Di).Results Compared with the values before conditioning,a significant rise in the FIB values was detected on day 7 and day 14 after auto-HSCT,no essentially change in the FIB values was detected on day 21 and day 28 and day 35 after auto-HSCT.Other coagulation parameters investigated(PT.APTT.D-Di) remained essentially unchanged.All of the patients not concurrent thrombotic disease.Conclusion Lymphoma patients with autologous peripheral blood hematopoietic stem cell transplantation appear abnormality in coagulant function.Clinical doctors should concern.
3.Characterization of the tunicamycin gene cluster unveiling unique steps involved in its biosynthesis.
Wenqing CHEN ; Dongjing QU ; Lipeng ZHAI ; Meifeng TAO ; Yemin WANG ; Shuangjun LIN ; Neil P J PRICE ; Zixin DENG
Protein & Cell 2010;1(12):1093-1105
Tunicamycin, a potent reversible translocase I inhibitor, is produced by several Actinomycetes species. The tunicamycin structure is highly unusual, and contains an 11-carbon dialdose sugar and an α, β-1″,11'-glycosidic linkage. Here we report the identification of a gene cluster essential for tunicamycin biosynthesis by high-throughput heterologous expression (HHE) strategy combined with a bioassay. Introduction of the genes into heterologous non-producing Streptomyces hosts results in production of tunicamycin by these strains, demonstrating the role of the genes for the biosynthesis of tunicamycins. Gene disruption experiments coupled with bioinformatic analysis revealed that the tunicamycin gene cluster is minimally composed of 12 genes (tunA-tunL). Amongst these is a putative radical SAM enzyme (Tun B) with a potentially unique role in biosynthetic carbon-carbon bond formation. Hence, a seven-step novel pathway is proposed for tunicamycin biosynthesis. Moreover, two gene clusters for the potential biosynthesis of tunicamycin-like antibiotics were also identified in Streptomyces clavuligerus ATCC 27064 and Actinosynnema mirums DSM 43827. These data provide clarification of the novel mechanisms for tunicamycin biosynthesis, and for the generation of new-designer tunicamycin analogs with selective/enhanced bioactivity via combinatorial biosynthesis strategies.
Actinobacteria
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enzymology
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genetics
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Base Sequence
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Biological Assay
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Carbohydrate Sequence
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Carbohydrates
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biosynthesis
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genetics
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Cloning, Molecular
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Gene Deletion
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Gene Library
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High-Throughput Screening Assays
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Molecular Sequence Data
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Multigene Family
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Recombinant Proteins
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biosynthesis
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genetics
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Sequence Analysis, DNA
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Streptomyces
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enzymology
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genetics
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Tunicamycin
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biosynthesis
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chemistry
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genetics
4.Accumulation of Dry Matter and Nutrients in Curcuma phaeocaulis at Different Growth Stages
Yayi QU ; Haohan WANG ; Yingxin CHEN ; Yemin ZHONG ; Wenxin LIAO ; Jie CHEN ; Xiaoyang CAI ; Min LI ; Yuming GAO ; Ying LIU
Chinese Journal of Experimental Traditional Medical Formulae 2022;28(24):197-207
ObjectiveTo study the accumulation and absorption of dry matter and nutrients in Curcuma phaeocaulis from Sichuan, the origin of Curcumae Radix (tuber) and Curcumae Rhizoma (rhizome), to explore the growth and development laws and nutrient demand characteristics of the medicinal species, and thus to lay a theoretical basis for rational fertilization. MethodThe plant growth indexes, dry matter accumulation, and nutrient content of C. phaeocaulis at different growth stages in Sichuan were measured and analyzed. ResultThis medicinal species featured the dominant growth of aboveground leaves and stems before October and growth of underground part (particularly the rhizomes and tubers) from October. During the whole growth period, the accumulation of nitrogen, phosphorus, potassium, calcium, magnesium, iron, manganese, zinc, and copper per plant was 2 450.31, 907.09, 3 171.18, 625.94, 493.38, 14.53, 2.24 , 2.93, 0.46 mg, respectively, with the order of potassium > nitrogen > phosphorus > calcium > magnesium > iron > zinc > manganese > copper. ConclusionThe species needs sufficient potassium and nitrogen, appropriate amount of phosphorus, calcium, and magnesium, a small amount of iron, and very little zinc, manganese, and copper for growth, and potassium is particularly important. Nitrogen, phosphorus, and potassium fertilizers supply macroelements and nitrogen fertilizer should be supplemented at seedling stage, leafy stage, early rhizome expansion stage, tuber expansion stage, and the second expansion stage of rhizome. Phosphorus and potassium fertilizers should be applied at seedling stage, tuber expansion stage, secondary expansion stage of rhizome, and dry matter accumulation stage of tuber and rhizome. At seedling stage, leafy stage, early rhizome expansion stage, tuber expansion stage, and the second expansion stage of rhizome, a variety of medium and trace elements-containing foliar fertilizers should be used.