1.Compound Heterozygosis Mutation of Low Density Lipoprotein Receptor Gene in Familial Hypercholestero-lemia Family
xiao-dong, PAN ; lu-ya, WANG ; jie, LIN ; peng-yu, SU ; ya, YANG ; shu, LIU ; lan-ping, DU ; xu, WANG
Journal of Applied Clinical Pediatrics 2006;0(13):-
Objective To identify mutations site and clinical characteristics of a familial hypercholesterolemia(FH) proband diagnosed clinically through DNA sequencing and family analysis in the proband and his family members of 3 generations.Methods Blood samples and clinical data of the kindred of total 29 from 3 generations members were collected.Proband had a physical examination electrocar-diogrom and vascular ultrasound.The proband and his family members took routine clinical exams,and genomic DNA was isolated.The promoter region and the 18 exons of low density liporotein receptor(LDLR) gene were screened by Touch down polymerase chain reaction -single strand conformation polymorphism(PCR-SSCP) and DNA sequencing.The result of sequencing were matched gene sequence published in the BLAST database.Results 1.Increased intima-media thickness and plaque were detected in the common carotid artery,right subclavian artery of the proband.Aortic valve regurgitation was found by echocardiography.2.No mutation R3500Q of ApoB100 was observed.3.Two heterozygous mutations in exon 10 and 13 of LDLR gene (W462X and A606T) were identified.The proband and 5 members of paternal relatives showed W462X heterozygosis mutation in exon 10 of LDLR gene which introduced the change from tryptophone to a new stop codon.The proband's mother and grandmother harboured A606T heterozygous mutation in exon 13 of LDLR gene due to a single base pair substitution of G for A in the codon for residue 1 879.Conclusions Disease causing mutations of proband are W462X and A606T compound heterozygosis mutation in exon 10 and 13 of LDLR gene inherited from mother and father.Proband shows homozyous phenotype though the genotype analysis indicates heterozygous mutations.
2.The periodontal initial therapy on chronic periodontics with periodontal-endodontic lesion: a case report.
Hong-yan WANG ; Li-si TAN ; Jing-bo LIU ; Ya-ping PAN
Chinese Journal of Stomatology 2013;48(12):755-758
Chronic Periodontitis
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complications
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diagnosis
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diagnostic imaging
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therapy
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Dental Pulp Diseases
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complications
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diagnosis
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diagnostic imaging
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therapy
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Dental Scaling
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Female
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Humans
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Periodontal Debridement
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Periodontal Diseases
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complications
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diagnosis
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diagnostic imaging
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therapy
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Radiography
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Root Canal Therapy
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Root Planing
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Young Adult
3.DEVELOPMENT OF ETHANOL PRODUCTION FROM PENTOSE AND HEXTOSE BY BACTERIUM
Xue-Feng LI ; Shen TIAN ; Ya-Ping PAN ; Xiu-Shan YANG ;
Microbiology 1992;0(06):-
There are abundant of lignocelluloses in agricultural wastes. And it can provide a variety of sugars involve pentose and hexose through pretreatments or hydrolyzation of these lignocelluloses. This review summarized the current status of bioethanol production by bacteria, and compared the productivity of some kinds of ethanologenic bacteria such as recombinant Zymomonas mobilis and Escherichia coli.
4.Construction of Recombinant Yeast Converting Xylose Angd Glucose to Ethanol
Zhen-Hong YUAN ; Ya-Ping PAN ; Ji-Kai LIU ; Yong-Jie YAN ; Xiu-Shan YANG ;
Microbiology 1992;0(03):-
Candida shehatae xyl1 gene and Pichia stipitis xyl2 gene were amplified by PCR and the xyl1 and xyl2 were both placed under the promoter GAL of vector pYES2 to produce the recombinant expression vector pYES2-P12. Subsequently the pYES2-P12 vector was transformed into S. cerevisiae YS58 by LiAc to produce the recombinant yeast YSS8-12. It was indicate that the recombinant yeast YSS8-12 could converse xylose to ethanol with the xylose consumption rate of 81. 3%.
5.Retrospective study on preventive usage of metal clip after EST
Biao GONG ; Shi WANG ; Li-Ke BIE ; Ya-Min PAN ; Xing-Ping LI ; Rui LU
Chinese Journal of Digestive Endoscopy 2001;0(03):-
Objective To study on the metal clip installation to avoid post-operative bleeding in pa- tients accepted papilla sphinctecotomy.Methods One hundred and eighty five patients who accepted ERCP +EST were divided into two groups:Group 1 was given routine regimen alone(N=95),group 2,given routine regimen and metal clip to prevent post-operative bleeding.Results The postoperative bleeding hap- pened in 3(3.2%)cases of Group 1 and none in Group 2,there is significant difference between these two groups(P<0.05).The breeding cases in group 1 were controlled by metal clip under endoscopy successful- ly.Conclusion Preventive usage of metal clip was significantly decreased the incidence of post-operative bleeding in EST patients.
6.Distribution of rag genotypes of Porphyromonas gingivalis in patients with chronic periodontitis.
Guan-hua WANG ; Dong-mei ZHANG ; Ya-ping PAN
West China Journal of Stomatology 2009;27(2):168-171
OBJECTIVETo investigate the distribution of rag genotypes of Porphyromonas gingivalis (P. gingivalis) in chronic periodontitis patients.
METHODSSubgingival plaque samples were collected from 50 chronic periodontitis patients. The occurrence of P. gingivalis was determined by polymerase chain reaction (PCR) using 16S rDNA-specific primers. Distribution of rag genotypes was assessed in P. gingivalis positive samples by PCR.
RESULTSThe occurrence of P. gingivalis was 70.7%, and the distribution of four rag genotypes among P. gingivalis positive samples was as follows: rag-1 60.4%; rag-2 23.6%; rag-3 44.3%; rag-4 15.1%, respectively.
CONCLUSIONP.gingivalis with various rag genotypes was present in subgingival plaque samples from chronic periodontitis patients, and P. gingivalis with rag-1 and rag-3 were more predominant in chronic periodontitis patients, which may be associated with the development of periodontitis.
Adult ; Chronic Periodontitis ; DNA-Binding Proteins ; Dental Plaque ; Female ; Genotype ; Humans ; Male ; Periodontitis ; Polymerase Chain Reaction ; Porphyromonas gingivalis
7.Evaluation of non-surgical treatment response on periodontitis with Florida probe.
Xi-da ZHA ; Ya-ping PAN ; Xue ZHAO ; Li LIN
West China Journal of Stomatology 2007;25(3):253-256
OBJECTIVETo evaluate the effect of non-surgical treatment with Florida probe.
METHODS100 patients with periodontitis were chosen in the study, who accepted periodontal non-surgical treatment. Pocket depth (PD) and attachment loss (AL) of all patients were recorded with Florida probe before and at the first month after periodontal non-surgical treatment. The detecting sites were mesialbuccal, buccal, distalbuccal and lingual. All teeth were divided into four groups: Anterior teeth group, premolar group, molar group and all teeth group. The therapeutic efficacy of PD and AL of groups, sites and different pocket depths was compared.
RESULTSIn all four groups, PD, AL before and after one month periodontal non-surgical treatment demonstrated significant differences (P < 0.05). It was found that the short-term effect of periodontal non-surgical treatment resulted in significant resolution of gingival inflammation and pronounced reduction in pocket depth and gain of attachment loss in all patients. Anterior teeth had better therapeutic efficacy than premolar and molar. The PD pronounced reduction and gained a significant difference between PD < 5 mm and PD > or = 5 mm (P < 0.05), but not with AL (P > 0.05). Sites had no significant difference (P > 0.05).
CONCLUSIONFlorida probe evaluates periodontal conditions accurately and objectively. Periodontal non-surgical treatment allowed for favourable treatment response on periodontitis, anterior teeth had a good therapeutic efficacy, different sites had the equal therapeutic efficacy.
Adult ; Female ; Humans ; Male ; Middle Aged ; Periodontal Index ; Periodontitis
8.Clinical association of gingipain K-caspase like subdomain expression of Porphyromonas gingivalis with puberty gingivitis.
Xu CHEN ; Zhi-hong ZONG ; Ya-ping PAN
Chinese Journal of Stomatology 2007;42(2):96-99
OBJECTIVETo detect and compare the activity and intensity of gingipain K (Kgp)-caspase like subdomain in culture medium and cell extract of Porphyromonas gingivalis (Pg) isolates in puberty gingivitis and to reveal the possible association of Kgp with puberty gingivitis.
METHODSThirty-six children of 14 to 17 years old were enrolled in this study. Clinical parameters including gingival index (GI), sulcus bleeding index (SBI) and probing depth (PD) were evaluated. Subgingival plaque samples were collected and Pg isolates were obtained. 16S rRNA PCR was used to confirm Pg clinical isolates. Bacteria were grown in batches of BHI base and harvested at the end of log-phase growth. Culture fractions (culture medium and cell extract) of 10 Pg isolates were performed with SDS-PAGE and Western blot technique using primary antibody against specific Kgp-caspase like subdomain. Activity of Kgp in both samples was detected as well. The data were statistically analyzed using SPSS 11.5 software. The relationship between the Kgp intensity/activity of Kgp and the clinical parameters was statistically analyzed using Spearman correlation coefficient.
RESULTSThere was positive correlation between the intensity/activity of Kgp and the clinical parameters (P < 0.05).
CONCLUSIONSThe Kgp in clinical isolates of Pg from puberty gingivitis is in complicated forms. Caspase-like molecules with low molecular weight may exist as intracellular functional protein molecules which can affect the interaction between Pg and host. Kgp was contributes in certain degree to the pathogenesis of puberty gingivitis.
Adhesins, Bacterial ; genetics ; metabolism ; Adolescent ; Cysteine Endopeptidases ; genetics ; metabolism ; Dental Plaque ; microbiology ; Female ; Gingivitis ; enzymology ; microbiology ; Humans ; Male ; Porphyromonas gingivalis ; genetics ; isolation & purification ; metabolism
9.Comparison between genes of highly toxic strain and minimally toxic strain of Porphyromonas gingivalis.
Li LIN ; Ya-ping PAN ; Chen LI
Chinese Journal of Stomatology 2006;41(12):734-738
OBJECTIVETo identify the differential genes in Porphyromonas gingivalis (P.gingivalis) highly toxic strain W83 and minimally toxic strain ATCC 33277.
METHODSUsing suppression subtractive hybridization (SSH) to compare P.gingivalis highly toxic strain W83 (tester) and minimally toxic strain ATCC 33277 (driver). The chromosomal DNAs were purified from P.gingivalis W83 and P.gingivalis ATCC 33277, and digested by restriction enzyme RsaI. The tester DNA samples were separated and ligated with adaptor 1 and adaptor 2R. Two subtractive hybridization and PCR profile were performed. Tester-specific DNAs also were selectively amplified. The mixture of subtracted DNA fragments were ligated with pMD-18T vector and transformed to competent cells E.coli JM109. The differential subtraction library was established. The positive clones were identified by PCR and then sequenced, and searched homologically.
RESULTSSubtractive library which had high subtractive efficiency was successfully set up and 36 positive clones were screened by SSH. The fragments from 88 bp to 372 bp were enriched in P.gingivalis highly toxic strain W83 sequences which were absent from P.gingivalis ATCC 33277. Through dot blot analysis confirmed that all these fragments were present in P.gingivalis W83 but absent from ATCC 33277. The GenBank homology search indicated that among them, several genes were associated with two paralogous regions of the chromosome; Some genes are associated with evasion of P.gingivalis W83; Another gene was related to antibiotic resistance and the products of some genes were virulence and acquisition of peptides.
CONCLUSIONSComparative whole-genome analysis of highly toxic and minimally toxic strains of P.gingivalis has identified the clustering of genes that are present in W83 but divergent in or absent from ATCC 33277. These genes may provide an important clue for studying the mechanism of occurrence and development of periodontal disease.
Genes, Bacterial ; Genome, Bacterial ; Nucleic Acid Hybridization ; Porphyromonas gingivalis ; genetics ; pathogenicity ; Sequence Analysis, DNA ; Virulence ; genetics
10.rgpB genetic polymorphism of Porphyromonas gingivalis in subgingival plaque.
Chen LI ; Ya-ping PAN ; Li LIN
Chinese Journal of Stomatology 2006;41(11):674-677
OBJECTIVETo analyse the genetic polymorphism of Arg-gingipainB (rgpB), a virulent factors of Porphyromonas gingivalis (P.gingivalis) and discuss the role of the different genotypes in the genesis and progress of chronic periodontitis.
METHODSA total of 104 subgingival plaque samples were included in this study. The extracted DNA was amplified with the primers designed to obtain the gene encoding the catalytic domain of rgpB (rgpB-cd), P.gingivalis was typed into four genotypes by restriction fragment length polymorphism (RFLP).
RESULTSIn lesion site, the detection rate of type IV was the highest (52.78%), which was higher than those of type I and III (P < 0.05 or P < 0.01). While in non-lesion site, The detection rate of type II was the highest (75.86%), which was higher than those of other types (P < 0.01).
CONCLUSIONSThe polymorphism of rgpB-cd gene may influence the virulence of P.gingivalis. P.gingivalis type IV may be well related to periodontitis, while type II may be a indigenous flora.
Adhesins, Bacterial ; genetics ; Adult ; Aged ; Chronic Periodontitis ; microbiology ; Cysteine Endopeptidases ; genetics ; Dental Plaque ; microbiology ; Female ; Humans ; Male ; Middle Aged ; Polymorphism, Genetic ; Porphyromonas gingivalis ; genetics ; pathogenicity