1.MicroRNA Target Prediction Based on Support Vector Machine Ensemble Classification Algorithm of Under-sampling Technique.
Journal of Biomedical Engineering 2016;33(1):72-77
Considering the low accuracy of prediction in the positive samples and poor overall classification effects caused by unbalanced sample data of MicroRNA (miRNA) target, we proposes a support vector machine (SVM)-integration of under-sampling and weight (IUSM) algorithm in this paper, an under-sampling based on the ensemble learning algorithm. The algorithm adopts SVM as learning algorithm and AdaBoost as integration framework, and embeds clustering-based under-sampling into the iterative process, aiming at reducing the degree of unbalanced distribution of positive and negative samples. Meanwhile, in the process of adaptive weight adjustment of the samples, the SVM-IUSM algorithm eliminates the abnormal ones in negative samples with robust sample weights smoothing mechanism so as to avoid over-learning. Finally, the prediction of miRNA target integrated classifier is achieved with the combination of multiple weak classifiers through the voting mechanism. The experiment revealed that the SVM-IUSW, compared with other algorithms on unbalanced dataset collection, could not only improve the accuracy of positive targets and the overall effect of classification, but also enhance the generalization ability of miRNA target classifier.
Algorithms
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MicroRNAs
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chemistry
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Support Vector Machine
2.Feature extraction for breast cancer data based on geometric algebra theory and feature selection using differential evolution.
Journal of Biomedical Engineering 2014;31(6):1218-1228
The feature extraction and feature selection are the important issues in pattern recognition. Based on the geometric algebra representation of vector, a new feature extraction method using blade coefficient of geometric algebra was proposed in this study. At the same time, an improved differential evolution (DE) feature selection method was proposed to solve the elevated high dimension issue. The simple linear discriminant analysis was used as the classifier. The result of the 10-fold cross-validation (10 CV) classification of public breast cancer biomedical dataset was more than 96% and proved superior to that of the original features and traditional feature extraction method.
Algorithms
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Artificial Intelligence
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Breast Neoplasms
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classification
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diagnosis
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Discriminant Analysis
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Female
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Humans
3.Mechanisms of electroacupuncture analgesia and pain-reliever
Chinese Medical Equipment Journal 2003;0(10):-
Purpose:To summarize the base of electroacupuncture analgesia theory and the development of pain-reliever at present.Methods:By consulting a great deal of literatures,the mechanism of electroacupuncture analgesia is summarized from nerve,body fluid to molecule.The merits,kinds,using methods and notices of electroacupuncture are briefly introduced.Present research of Electroacuncture analgesia and its prospects based on traditional Chinese medical theory and modern science and technology are also summed up.Conclusion:This paper provides the basic theory for studying and developing the new style pain-relievers.
4.Research on the methods for inter-class distinctive feature selection for leucocyte recognition based on attribute hierarchical relationship.
Lianwang HAO ; Wenxue HONG ; Ting LI
Journal of Biomedical Engineering 2014;31(6):1202-1206
To increase efficiency of automated leucocyte pattern recognition using lower feature dimensions, a novel inter-class distinctive feature selection method for chromatic leucocyte images was proposed based on attribute hierarchical relationship. According to the attribute constraints in formal concept analysis, we established a knowledge representation and discovery method based on the hierarchical optimal diagram by defining attribute value and visual representation of optimized hierarchical relationship. It was applied to human peripheral blood leucocytes classification and 12 distinctive attributes were simplified from 60 inter-class attributes, which contributes significantly to reduced feature dimensions and efficient inter-class feature classification. Compared with the classical experimental data, the inter-class distinctive feature selection method based on hierarchical optimal diagram was proved to be usable and effective for six leucocyte pattern recognition.
Humans
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Leukocytes
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classification
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Pattern Recognition, Automated
5.Application of semi-supervised sparse representation classifier based on help training in EEG classification.
Min JIA ; Jinjia WANG ; Jing LI ; Wenxue HONG
Journal of Biomedical Engineering 2014;31(1):1-6
Electroencephalogram (EEG) classification for brain-computer interface (BCI) is a new way of realizing human-computer interreaction. In this paper the application of semi-supervised sparse representation classifier algorithms based on help training to EEG classification for BCI is reported. Firstly, the correlation information of the unlabeled data is obtained by sparse representation classifier and some data with high correlation selected. Secondly, the boundary information of the selected data is produced by discriminative classifier, which is the Fisher linear classifier. The final unlabeled data with high confidence are selected by a criterion containing the information of distance and direction. We applied this novel method to the three benchmark datasets, which were BCI I, BCI II_IV and USPS. The classification rate were 97%, 82% and 84.7%, respectively. Moreover the fastest arithmetic rate was just about 0. 2 s. The classification rate and efficiency results of the novel method are both better than those of S3VM and SVM, proving that the proposed method is effective.
Algorithms
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Brain-Computer Interfaces
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Electroencephalography
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classification
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Humans
6.Automatic Classification of Epileptic Electroencephalogram Signal Based on Improved Multivariate Multiscale Entropy.
Yonghong XU ; Jie CUI ; Wenxue HONG ; Huijuan LIANG
Journal of Biomedical Engineering 2015;32(2):256-262
Traditional sample entropy fails to quantify inherent long-range dependencies among real data. Multiscale sample entropy (MSE) can detect intrinsic correlations in data, but it is usually used in univariate data. To generalize this method for multichannel data, we introduced multivariate multiscale entropy into multiscale signals as a reflection of the nonlinear dynamic correlation. But traditional multivariate multiscale entropy has a large quantity of computation and costs a large period of time and space for more channel system, so that it can not reflect the correlation between variables timely and accurately. In this paper, therefore, an improved multivariate multiscale entropy embeds on all variables at the same time, instead of embedding on a single variable as in the traditional methods, to solve the memory overflow while the number of channels rise, and it is more suitable for the actual multivariate signal analysis. The method was tested in simulation data and Bonn epilepsy dataset. The simulation results showed that the proposed method had a good performance to distinguish correlation data. Bonn epilepsy dataset experiment also showed that the method had a better classification accuracy among the five data set, especially with an accuracy of 100% for data collection of Z and S.
Algorithms
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Electroencephalography
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Entropy
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Epilepsy
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diagnosis
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Humans
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Multivariate Analysis
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Nonlinear Dynamics
7.Feature Extraction of Chinese Materia Medica Fingerprint Based on Star Plot Representation of Multivariate Data
Jianxin CUI ; Wenxue HONG ; Rongjuan ZHOU ; Haibo GAO
Chinese Herbal Medicines 2011;03(2):140-143
Objective To study a novel feature extraction method of Chinese materia medica (CMM) fingerprint. Methods On the basis of the radar graphical presentation theory of multivariate, the radar map was used to figure the non-map parameters of the CMM fingerprint, then to extract the map features and to propose the feature fusion. Results Better performance was achieved when using this method to test data. Conclusion This shows that the feature extraction based on radar chart presentation can mine the valuable features that facilitate the identification of Chinese medicine.
8.Research and prospect on modern moxibustion instrument
Wenxue HONG ; Jianhong CAI ; Jun JING ; Chengwei LI
Chinese Medical Equipment Journal 1989;0(03):-
Based on the histories of moxibustion and moxibustion apparatus, this paper studies two basic patterns and the problem of categorizing about moxibustion instrument, and summarizes and experimentalizes its mechanism. Its developing way is brought up.
9.Knowledge Discovery In Terms of Sunshine Diagram of Multi-layer Complex Concept Network Express on Urination Formula-syndrome inTreatise on Exogenous Febrile Disease
Chaonan LIU ; Ye DENG ; Saimei LI ; Yuzhou LIU ; Min LIU ; Wenxue HONG
World Science and Technology-Modernization of Traditional Chinese Medicine 2015;(9):1775-1779
This study was aimed to discover the knowledge of urination formula-syndrome in theTreatise on Exogenous Febrile Diseasebased on the Sunshine diagram of multi-layer complex concept network express. A total of 39 items about urination formula-syndrome in theTreatise on Exogenous Febrile Diseasewere collected, and then regulated into standard expression. The database was established and the multi-layer complex concept network express was constructed. The Sunshine diagram was drawn and the connotation rules on urination formula-syndrome in theTreatise on Exogenous Febrile Diseasewere summarized through mode development of the diagram. The results showed that the Sunshine diagram collected 44 objects (i.e., formulas) and 191 properties (i.e. syndromes), which expressed the urination formula-syndrome visually. It was concluded that the application of Sunshine diagram in the formula-syndrome knowledge based on multi-layer complex concept network express provided certain references on the inheritance and development of classics in traditional Chinese medicine (TCM).
10.Research on Discovery and Application of Regular Syndrome-Treatment Pattern of Classical Chinese Medicinal Formulae for Emotional Diseases Based on Formal Concept Analysis
Sunjing XU ; Saimei LI ; Wenxue HONG ; Zhangzhi ZHU ; Ridong LI ; Yuzhou LIU
World Science and Technology-Modernization of Traditional Chinese Medicine 2014;(9):2025-2030
This study was aimed to analyze the regulation of syndrome-treatment pattern of classical Chinese medici-nal formulae for emotional diseases based on formal concept analysis. First, we dealt with the decision formal context of 51 prescriptions about emotional symptom in the Treatise on Febrile and Miscellaneous Diseases and the Es-sentials from the Golden Cabinet based on the principle of optimization. Then, we generated a new partial-order at-tribute diagram in order to present the specific character. Finally, we explained properties of partial-order structure graph from traditional Chinese medicine (TCM) experts' point of view based on knowledge discovery. The results indi-cated the relationship between prescription and syndrome of emotional diseases. It was concluded that method pro-posed in this paper worked well in treatment of description of syndrome differentiation and discovery of new knowl-edge from the known data in the clinical diagnosis.