1.Vancomycin-resistant Enterococcus faecium of multi locus sequence type 18 in Malaysia
Poh Leng Weng ; Rukman Awang Hamat ; Yoke Kqueen Cheah ; Norita Zainol ; Muhammad Nazri Aziz
The Medical Journal of Malaysia 2012;67(6):639-640
Vancomycin-resistant Enterococcus faecium (VREF) in
human infections mostly belong to the high-risk, epidemic,
clonal complex-17 (CC17) group. Treatment limitation and
high conjugation frequency makes it dominant in hospitals
worldwide. We investigated positive cultures by Pulse-field
gel electrophoresis (PFGE), multi locus sequence typing
(MLST). DNA of two strains (A2 and C) appeared to be
clonally related by PFGE. Three strains were of ST 18 type
(A1, B and C) and strain A2 is of a new ST 596. This ST 18
type strain found in our study is crucial and is believed to be the first in Malaysia.
2.In vitro Antiplasmodial Activity and Cytotoxicity of Ten Plants Used as Traditional Medicine in Malaysia
Wan Omar Abdullah ; Ngah Zasmy Unyah ; Rukman Awang Hamat ; Baharudin Omar ; Mohamed Kamel Abd Ghani ; Mohammad Rayani ; Gholam Reza HAtam
Malaysian Journal of Health Sciences 2011;9(2):5-8
Dichloromethane and methanolic extracts of each plant were tested for their antiplasmodial activity on chloroquineresistant strain of Plasmodium falciparum (FCB strain), based on lactate dehydrogenase activity. Cytotoxicity was assessed with the MTT test on MRC-5 human diploid embryonic lung cells. Most extracts of ten selected plants used in Malay traditional medicine in Malaysia had activity in vitro. This supports continued investigations of traditional medicine in the search for new antimalarial agent. The compounds responsible for the observed antiplasmodial effects are under investigation.
3.Characterization and antimicrobial activities of two Streptomyces isolates from soil in the periphery of Universiti Putra Malaysia
Nurul Zarith Mohamad Zin ; Nor Asmara Tasrip ; Mohd Nasir Mohd Desa,* ; Cheah Yoke Kqueen ; Zainul Amiruddin Zakaria ; Rukman Awang Hamat ; Mariana Nor Shamsudin,
Tropical Biomedicine 2011;28(3):651-660
This study was to assess the identification and antimicrobial activities of two
actinomycete isolates. The two isolates designated as B8 and C2, were isolated from a patch
of soil in the peripheral area of Universiti Putra Malaysia by streaking on starch casein agar
after standard serial dilution procedures. Their antimicrobial activities were first evaluated
against eight clinical laboratory strains namely Bacillus sp., Enterococcus sp., Escherichia
coli, Klebsiella sp., Pseudomonas sp., Salmonella sp., Staphylococcus aureus, and
Staphylococcus epidermidis by perpendicular streak method on Mueller Hinton and Tryptic
Soy agar. In both media, a broad-spectrum antibacterial activity was observed for both
isolates, with B8 against all the test bacteria and C2 against five of them (Bacillus sp., E. coli,
Pseudomonas sp., S. aureus and S. epidermidis). Re-assessment against E. coli ATCC 25922
and S. aureus ATCC 25923 strains by similar method showed antibacterial activities by
isolate B8 against both ATTC strains while C2 only against S. aureus ATCC 25923. Streptomyces
griseus ATCC 10137 was included in the later experiment and showed antibacterial activity
against both ATCC strains. Subsequently, the two isolates were identified by PCR/sequencing
techniques and phylogenetic analysis to be Streptomyces species (>93% homology based on
16S rRNA and rpoB genes). Characterization on cultural characteristic and viable count at
different temperatures (37ºC and 28ºC), on different microbiological media (AIA, ISP-2, MHA,
NA, PDA and TSA), were performed. More morphological features were observed on ISP-2 for
both isolates. A higher growth yield was also observed at 28ºC in all media but in comparing
that between the two isolates, isolate B8 outnumbered C2 at all experimental conditions. The
observed variation in cultural traits and growth yield indicate unique properties between the
two antibiotic-producing isolates
5.Plasmodium ovale Malaria and Dengue Co-infection in a Glucose-6-Phosphate Dehydrogenase (G6PD) Deficiency Patient : A Case Study
Siti Sarah Shahimi ; Marniza Aziz ; Nur Ezrin Ilham ; Rukman Awang Hamat
Malaysian Journal of Medicine and Health Sciences 2020;16(SP 1, September):44-46
Malaria and dengue are among the most important public health threats in Malaysia. These two-arthropod borne diseases have overlapping mosquito biotopes and clinical manifestations, and co-infections have been
associated with increased severity notably on the haematological abnormalities. Dengue caused by four dengue virus (DENV) serotypes has been highly endemic in Malaysia. However, malaria due to Plasmodium ovale (P. ovale) has
been rarely reported among Malaysian population. Nonetheless, climate change and increased influx of
international travellers and migrants have shifted the parasite boundaries to non-endemic countries. Thus,
diagnosis and management of imported malarial infections should rely on the geographical knowledge on
the origin of potential Plasmodium species, prompt laboratory testing and public health intervention.
Moreover, it would be difficult to clinically differentiate dengue fever (DF) with a potential relapse or partially treated case of P. ovale, and there is absolutely no transmission of this Plasmodium species in our country. Hence, we believed that this case deserved to be reported.
6.A Case of Neurocysticercosis in Immigrant Worker Presented with Seizures
Amir Safuan Khamshah ; Nur Izati Mustapa ; Rukman Awang Hamat
Malaysian Journal of Medicine and Health Sciences 2021;17(No.3):333-335
Neurocysticercosis is an infection of the central nervous system (CNS) by larval stage of Taenia solium (pork tapeworms) called cysticerci. Humans may acquire the infection through ingestion of T. solium embryonated eggs after
consuming contaminated undercooked food or water. Being a multiracial country where pig farming is limited and
consumption of raw or undercooked food is an uncommon practice, the prevalence of neurocysticercosis in Malaysia is presumably low. However, through immigration and international travel, cases of neurocysticercosis may go
underreported. Due to unfamiliarity with the disease, cases of neurocysticercosis also may be missed in Malaysia.
Therefore, thorough history taking and physical examinations with high index of suspicion are required by the clinicians to warrant proper investigations in order to meet the diagnosis of neurocysticercosis. Patients diagnosed with
neurocysticercosis should be treated cautiously with anthelmintic, to avoid unwanted overwhelming immunological
response that can lead to unfavourable outcomes. This is a case report of a foreign worker who presented with first
onset of focal seizure associated with intermittent headache.
7.Malaria and Its Prevention: Socio-acceptability in the Application of Insecticides-treated Bed Nets Among Household Heads in the Rural Village Community of Mazabuka, Zambia
Jane Banda ; Nur Raihana Ithnin ; Malina Osman ; Rukman Awang Hamat
Malaysian Journal of Medicine and Health Sciences 2023;19(No.2):159-169
Introduction: Malaria poses immerse public health challenges in the world as it is still causing significant morbidity
and mortality especially in endemic regions such as Zambia. One of the effective tools in preventing malaria is the
application of insecticide-treated bed nets (ITNs). This study aims to explored the socio-acceptability of malaria and
ITNs among rural village community of Mazabuka, Zambia. Methods: A semi-structured questionnaire was administered to 177 respondents via two different approached methods; focus group discussions and one-to-one interviews
to assess the level of KAP of the respondents about malaria and ITNs. Results: Most of the respondents (98.7%) possessed ITNs that were provided free of charge by the Ministry of Health Zambia. Overall, the knowledge and attitude
of respondents on malaria and ITNs were at moderate levels of 68.1% and 71.8%, respectively. In contrast, the level
of practice was poor with only 36.2% of positive response. Although 92.1% of the respondents answered correctly
on the association between malaria and mosquito bites, myths and misconceptions were still common as some of
them still attributed malaria to drinking dirty waters (32.8%), bad weather (15.8%), witchcraft (3.4%), and bathing
dirty water (19.8%). The practice was significantly associated with knowledge (p=0.003), but not attitude (p=0.230).
Logistic regression analysis revealed that respondents with high knowledge level and tertiary education were more
likely to use ITNs correctly (OR=2.957; OR=21.739, respectively). Conclusion: The present study showed that the
knowledge gaps were remained among the villagers as misconceptions and their believe of myths were still exist.
8.Distribution of virulence genes and the molecular epidemiology of Streptococcus pyogenes clinical isolates by emm and multilocus sequence typing methods
Siti Nur Adila Hamzah ; Mohd Nasir Mohd Desa ; Azmiza Syawani Jasn ; Niazlin Mohd Taib ; Siti Norbaya Masri ; Rukman Awang Hamat
The Medical Journal of Malaysia 2021;76(2):164-170
Background: Streptococcus pyogenes has a variety of
virulence factors and the predominant invasive strains differ
according to specific emm types and geographical
orientation. Although emm typing is commonly used as the
gold standard method for the molecular characterisation,
multilocus sequence typing (MLST) has become an
important tool for comparing the genetic profiles globally.
This study aimed to screen selected virulence genes from
invasive and non-invasive clinical samples and to
characterise the molecular epidemiology by emm typing and
MLST methods.
Materials and Methods: A total of 42 S. pyogenes isolates
from invasive and non-invasive samples collected from two
different tertiary hospitals were investigated for the
distribution of virulence factors and their molecular
epidemiology by emm and multilocus sequence typing
methods. Detection of five virulence genes (speA, speB,
speJ, ssa and sdaB) was performed using multiplex
polymerase chain reaction (PCR) using the standard primers
and established protocol. Phylogenetic tree branches were
constructed from sequence analysis utilised by neighbour
joining method generated from seven housekeeping genes
using MEGA X software.
Results: Multiplex PCR analysis revealed that sdaB/speF
(78.6%) and speB (61.9%) were the predominant virulence
genes. Regardless of the type of invasiveness, diverse
distribution of emm types/subtypes was noted which
comprised of 27 different emm types/subtypes. The
predominant emm types/subtypes were emm63 and emm18
with each gene accounted for 11.8% whereas 12% for each
gene was noted for emm28, emm97.4 and emm91. The MLST
revealed that the main sequence type (ST) in invasive
samples was ST402 (17.7%) while ST473 and ST318 (12% for
each ST) were the major types in non-invasive samples. Out
of 18 virulotypes, Virulotype A (five genes, 55.6%) and
Virulotype B (two genes, 27.8%) were the major virulotypes
found in this study. Phylogenetic analysis indicated the
presence of seven different clusters of S. pyogenes.
Interestingly, Cluster VI showed that selected emm/ST types
such as emm71/ST318 (n=2), emm70.1/ST318 (n=1),
emm44/ST31 (n=1) and emm18/ST442 (n=1) have clustered
within a common group (Virulotype A) for both hospitals
studied.
Conclusion: The present study showed that group A
streptococcci (GAS) are genetically diverse and possess
virulence genes regardless of their invasiveness. Majority of
the GAS exhibited no restricted pattern of virulotypes except
for a few distinct clusters. Therefore, it can be concluded
that virulotyping is partially useful for characterising a
heterogeneous population of GAS in hospitals.
9.Fibronectin-binding Protein F1 (prtF1) Gene Is Highly Distributed in Tetracycline-resistant, Erythromycin-sensitive Streptococcus pyogenes Isolates
Simon Onyema Azi ; Suresh Kumar ; Leslie Than Thian Lung ; Malina Osman ; Rukman Awang Hamat
Malaysian Journal of Medicine and Health Sciences 2021;17(No.2):239-245
Introduction: The internalization process of group A streptococci (GAS) into human cells is one of the crucial steps
in the pathogenesis of GAS infections, which could also affect their susceptibility responses toward several antibiotics. Currently, data on the distribution of internalization-associated genes and susceptibility patterns are still lacking
in Malaysia. This study investigated the distribution of fibronectin-binding protein F1 (prtF1) and streptococcal pyrogenic exotoxin B (speB) genes in GAS isolates with their susceptibility profiles and source of samples. Methods: We
used 43 GAS isolates from our previous stock culture and performed antibiotic susceptibility testing by Kirby-Bauer
disk diffusion method and interpreted the results according to the established guidelines. We detected virulence
(prtF1 and speB) and resistance (ermA, ermB, mefA, tetM and lnuA) genes by PCR method using established primers
and protocols. Results: High resistance rates were observed against doxycycline (58.1%) and clindamycin (16.3%).
In comparison, 100.0% and 46.5% of GAS isolates carried speB and prtF1 genes, respectively. tetM and lnuA genes
were detected in all respective resistant isolates (100% for each). No macrolide resistance genes were detected.
Interestingly, prtF1 gene was highly distributed in doxycycline-resistant than doxycycline-sensitive isolates (60.0%
versus 27.8%). Conclusions: High resistance rate of GAS toward doxycycline in our study may potentially reflect
the uncontrol dissemination of tetM gene among our isolates. The presence of prtF1 gene among this strain would
enhance its ability to evade the intracellular action of antibiotics, which may affect the management of GAS diseases.
Thus, close monitoring of GAS by molecular methods is required in the future.
10.Susceptibility Profiles of Bacterial Pathogens Causing Community-Acquired Urinary Tract Infections
Salman Sahab Atshan ; Zohier B Salah ; Khalid Jameel Kadhim Al-Zihirye ; Alreshidi Mateg Alif ; Rukman Awang Hamat
Malaysian Journal of Medicine and Health Sciences 2021;17(No.4):3-7
Introduction: Uncontrolled empirical treatment of urinary tract infections (UTIs) has negative aspect on predicting
the emergence of antimicrobial resistance and knowledge of those patterns has become extremely important
from time to time. Therefore, the aim of the present study was to check the prevalence and resistance patterns of
uropathogens in the community acquired UTIs. Methods: A total of 7132 urine samples were combined from male
3131 (43.9%) and female 4001 (56.1%) outpatients suspected of having UTIs, respectively over a three-year period
and cultured on routine culture media. The bacteria have been identified using basic biochemical tests, and sensitivity
to various antibiotics was determined by the method of disk diffusion. Results: Of 7132 urine samples 797
(11.2%) yielded significant uropathogens. Among the bacterial species, Escherichia coli was the major causative
agent of UTIs for both gender (63.7%), followed by Klebsiella spp (20.8%), Enterococcus faecalis (5.3%), Pseudomonas
spp (4.1%), Proteus spp (3.1%), Enterobacter spp (1.5%), Candida albicans (0.6%), Staphylococcus saprophyticus
(0.5%), Providencia spp (0.1%) and Staphylococcus aureus (0.1%). The antibacterial sensitivity testing
for E. coli, to commonly used antibiotics were showed variable resistant as follows: Ampicilln (78%), Amoxicillin
(71%), trimethoprim sulfamethoxazole (42%), Amox/clav. (14%) gentamicin (20%), nitrofurantoin (11%), nalidixic
acid (22%), ciprofloxacin (20%), Imipenem (16%),Ceftazidim (26%),Cefotaxim (25%),Ceftriaxon (21%),Cefuroxim
(33%). Conclusions: The findings showed that antimicrobial resistance patterns of uropathogens in variable, and
continuous monitoring of resistance patterns by using of antibiotic susceptibility testing in the laboratory is the most
appropriate to treat UTIs rather than the choice of UTIs empirical treatment.