Aims: Erwinia psidii was first reported in 2017 to be the causal pathogen of papaya dieback disease (PDD) in Sabah, Malaysia. The present study aimed to isolate potential biocontrol agents against this pathogen. Methodology and results: Out of the 20 samples collected from Crocker Range of Sabah, 154 bacteria and 55 fungi isolates were isolated and screened for their antagonistic activity against E. psidii. The fungi and bacteria which gave the highest inhibition to E. psidii were identified using molecular technique as Alcaligenes faecalis and Lecanicillium sp., respectively. Both isolates were selected for extraction of their secondary metabolites to determine their bioactivity against E. psidii. Micro-well dilution method was used to determine minimum inhibitory concentration (MIC) for each microbes’ extract. GC-MS analysis was carried out to determine their secondary metabolites. Conclusion, significance and impact of study Lecanicillium sp. (Diethyl ether, chloroform and ethyl acetate) extracts and A. faecalis (Diethyl ether extract) showed positive inhibition against E. psidii. GC-MS analysis revealed that both A. faecalis and Lecanicillium sp. had secreted some secondary metabolites such as N-formylmaleamic acid, Oleamide and D-1-Piperideine-2-carboxylic acid that may relate to the growth inhibition. Alcaligenes faecalis and Lecanicillium sp. are potential to be further investigated as biocontrol against E. psidii.