2.Molecular ecological network reveals the response of metallurgical microorganisms to energy substrates.
Junming XIONG ; Liyuan MA ; Shanshan HUANG ; Xiangliang LI ; Hongmei WANG
Chinese Journal of Biotechnology 2020;36(12):2674-2684
By analyzing the shift of microbial communities under different iron/sulfur ratios, the response of metallurgical microorganisms to energy substrates was investigated based on molecular ecological networks. High-throughput sequencing of microbial samples from different domesticated batches was conducted to analyze the changes in community composition, alpha and beta diversity. Based on the molecular ecological network, the interactions between microorganisms under different iron/sulfur ratios were explored. Keystones were identified to analyze the community response to energy substrates. In the process of domestication based on different energy substrates, the dominant species in the in iron-rich and sulfur-less community were Acidithiobacillus ferrooxidans and A. ferriphilus. A. thiooxidans accounted for up to 90% in the sulfur-rich and iron-less community after 3 domesticating batches. The results of alpha and beta diversity analysis show that the domestication process of sulfur-rich and iron-less substrates reduced the diversity of microbial communities. Molecular ecological network analysis shows that the keystones were all rare species with low abundance. During the domestication by sulfur-rich and iron-less energy substrates, the bacterial species had a closer symbiotic relationship and the community was more stable. Through this domestication experiment, the impact of different energy substrates on microbial aggregation was clarified. Domesticating metallurgical microorganisms by using sulfur-rich and iron-less energy substrates made the microbial colonies to be more stable, which was conducive to the oxidation of iron and sulfur, promoting the dissolution of sulfide minerals. Our findings provide a reference for the directional domestication of metallurgical microorganisms.
Acidithiobacillus/genetics*
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Iron
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Minerals
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Oxidation-Reduction
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Sulfur
3.Bioconversion of methane by metabolically engineered methanotrophs.
Chinese Journal of Biotechnology 2021;37(3):816-830
Due to abundant availability of shale gas and biogas, methane has been considered as one of the most potential carbon sources for industrial biotechnology. Methanotrophs carrying the native methane monooxygenase are capable of using methane as a sole energy and carbon source, which provides a novel strategy for reducing greenhouse gas emission and substituting edible substrates used in bioconversion processes. With the rapid development of genetic engineering tools and biosynthesis techniques, various strategies for improving the efficiency of methane bioconversion have been achieved to produce a variety of commodity bio-based products. Herein, we summarize several important aspects related with methane utilization and metabolic engineering of methanotrophs, including the modification of methane oxidation pathways, the construction of efficient cell factories, and biosynthesis of chemicals and fuels. Finally, the prospects and challenges of the future development of methane bioconversion are also discussed.
Biofuels
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Biotechnology
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Metabolic Engineering
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Methane
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Oxidation-Reduction
4.Chemical synthesis of a synthetically useful L-galactosaminuronic acid building block.
Chun-Jun QIN ; Hong-Li HOU ; Mei-Ru DING ; Yi-Kuan QI ; Guang-Zong TIAN ; Xiao-Peng ZOU ; Jun-Jie FU ; Jing HU ; Jian YIN
Chinese Journal of Natural Medicines (English Ed.) 2022;20(5):387-392
Most bacterial cell surface glycans are structurally unique, and have been considered as ideal target molecules for the developments of detection and diagnosis techniques, as well as vaccines. Chemical synthesis has been a promising approach to prepare well-defined oligosaccharides, facilitating the structure-activity relationship exploration and biomedical applications of bacterial glycans. L-Galactosaminuronic acid is a rare sugar that has been only found in cell surface glycans of gram-negative bacteria. Here, an orthogonally protected L-galactosaminuronic acid building block was designed and chemically synthesized. A synthetic strategy based on glycal addition and TEMPO/BAIB-mediated C6 oxidation served well for the transformation of commercial L-galactose to the corresponding L-galactosaminuronic acid. Notably, the C6 oxidation of the allyl glycoside was more efficient than that of the selenoglycoside. In addition, a balance between the formation of allyl glycoside and the recovery of selenoglycoside was essential to improve efficiency of the NIS/TfOH-catalyzed allylation. This synthetically useful L-galactosaminuronic acid building block will provide a basis for the syntheses of complex bacterial glycans.
Carbohydrates
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Glycosides
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Oligosaccharides
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Oxidation-Reduction
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Polysaccharides/chemistry*
5.Analysis of the uncertainty of the easily oxidized substance of the injector by titration.
Liu LIJUN ; Yan MIN ; Yi BIXIN
Chinese Journal of Medical Instrumentation 2010;34(1):50-52
Determined the easily oxidized substance of the injector based on GB15810-2001, and analyzed the source of uncertainty of the process of titration symmetrically, and valued the uncertainty of the result of data analysis.
Oxidation-Reduction
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Oxygen Compounds
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analysis
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Syringes
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Titrimetry
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Uncertainty
6.Chitosan and its applications in synthesis of metal nanomaterials.
Dongwei WEI ; Cuiying JIA ; Xueping JIA ; Yongzhong YE ; Weiping QIAN
Chinese Journal of Biotechnology 2009;25(10):1449-1458
Chitosan has natural abundance, unique bioactivity and attractive physicochemical properties. Recent years, the synthesis of chitosan-based metal nanomaterials has attracted increasing attention. The synthesis of metal nanoparticles utilizing biomolecular or organism offers a mild medium, and thus a greater degree of control over the nanoparticles produced, along with higher reproducibility. In particular, preparation of metal nanoparticles based on biomolecular or organism has its unique facility in integrating "minimum feature sizes" into labile biological components to an excellent synergy and bifunctional effect and consequently a more broad application. Herein, we review the new development of chitosan, chitosan-based synthesis of metal nanomaterials, and their application.
Catalysis
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Chitosan
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chemistry
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Metal Nanoparticles
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chemistry
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Oxidation-Reduction
7.The effect of the structure of polychlorinated biphenyls on their hydroxylation, oxidation, and glutathionyl conjugation reactions.
Er Qun SONG ; Xiao Yan MA ; Xing Guo TIAN ; Jing LIU ; Li Chao LIU ; Hui DONG ; Yang SONG
Biomedical and Environmental Sciences 2013;26(2):138-147
OBJECTIVETo compare the nature of the metabolites formed from the phase I metabolism (hydroxylation and oxidation) and phase II metabolism (glutathionyl conjugation) of PCBs that have different chlorine substitution patterns. To discuss the structure-activity relationships and metabolic mechanisms of PCBs.
METHODS4-Cl-biphenyl (PCB3), 4,4'-Cl-biphenyl (PCB15), 3,4,3',4'-Cl-biphenyl (PCB77) were used for in vitro metabolic study. LC/MS and UV-Vis studies were performed for metabolites identification.
RESULTSThe cytochrome P-450 catalyzed hydroxylation rate decreased as the number of chlorine substitutions increased. In this reaction, PCB3 was fully metabolized, approximately half of the PCB15 was metabolized and PCB77 was not metabolized at all. The oxidation rate of PCB15-HQ was higher than that of PCB3-HQ under various oxidation conditions. The LC/MS and UV-Vis data suggest that in the conjugation reaction of PCB15-Q and GSH, the Michael addition reaction occurs preferentially over the displacement reaction.
CONCLUSIONThe metabolic profiles of polychlorinated biphenyls (PCBs) are dramatically affected by chlorine substitution patterns. It is suggested that the metabolic profiles of PCBs are related to their chlorine substitution patterns, which may have implications for the toxicity of PCB exposure.
Hydroxylation ; Molecular Structure ; Oxidation-Reduction ; Polychlorinated Biphenyls ; chemistry
8.Progress in researches on the effect of acupuncture in antagonizing oxygen stress.
Zhong-ren LI ; Mei-hong SHEN ; Yong-jun PENG
Chinese journal of integrative medicine 2005;11(2):156-160
Oxidation and free radicals participate in the pathological process of multiple diseases in organisms, and acupuncture shows good effect in antagonizing oxygen stress (OS). This article reviews the effect of acupuncture in antagonizing oxygen stress and the mechanism of its anti-free radical effect in various diseases. The authors hold that acupuncture not only has a chain-blocking effect, but also has preventive and repairing effects of anti-oxidation. And anti-OS action is one of the important mechanisms of acupuncture.
Acupuncture
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Chronic Disease
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therapy
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Humans
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Moxibustion
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Oxidation-Reduction
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Oxidative Stress
9.Formation of pyrrole adducts in 2,5-hexanedione-containing human serum cultured in vitro.
Ming-xing ZHU ; Hong-yin YIN ; Ke-qin XIE
Chinese Journal of Industrial Hygiene and Occupational Diseases 2013;31(8):611-614
OBJECTIVETo investigate the relationship between formation of pyrrole adducts and concentration of 2, 5-hexanedione (2, 5-HD) and to provide an experimental basis for the study on toxicity of n-hexane.
METHODSSerum samples were collected from normal persons and were then filtered and sterilized. They were mixed with 2,5-HD to obtain sera with final 2, 5-HD concentrations of 10, 25, 50, 100, and 200 mg/L, and blank serum was also prepared. The sera were cultured at 37°C and taken at different time points. Colorimetry was used to quantify the pyrrole adducts formed in sera, and gas chromatography was used to measure the remaining 2, 5-HD levels in sera.
RESULTSThe content of pyrrole adducts increased as the culture proceeded and was dependent on the dose of 2, 5-HD; at the end of the experiment, the content of pyrrole adducts differed significantly across all concentration groups (P < 0.5). The concentrations of 2,5-HD decreased as the culture proceeded; at the end of the experiment, the concentrations of 2, 5-HD, from the highest to the lowest, decreased by 29%, 55%, 22%, 44%, and 40%, respectively. The decrease in 2, 5-HD had a positive correlation with the increase in pyrrole adducts, and the correlation coefficients for 200∼10 mg/L 2, 5-HD were 0.865, 0.697, 0.835, 0.823, and 0.814, respectively.
CONCLUSIONThe content of formed pyrrole adducts increases as the concentration of 2,5-HD rises; there is a positive correlation between the decrease in 2, 5-HD and the increase in pyrrole adducts in human serum.
Hexanones ; chemistry ; Humans ; Oxidation-Reduction ; Pyrroles ; chemistry ; Serum ; chemistry
10.Study of corrosion behavior of titanium with anodized oxidation film.
Wei-qiang YU ; Jing QIU ; Fu-qiang ZHANG
West China Journal of Stomatology 2011;29(2):203-205
OBJECTIVETo investigate the variation of the corrosion resistance of anodized oxidation film on titanium by electrochemical methods.
METHODSTiO2 nanotube layer was formed on Ti surface by anodization. The morphology was observed with scanning electron microscope (SEM) and the crystal phase was analyzed using X-ray diffraction(XRD) before and after annealing. Polarization curves were examined by electrochemical methods.
RESULTSTitanium oxide nanotubes with 80 nm diameter and 400 nm length was seen on Ti after anodization. The annealing nanotubes was anatase crystalline phase by X-ray diffraction analysis. The self-corrosion potential and break-down potential of smooth Ti were significantly lower than TiO2 nanotubes by anodization (P < 0.05). The self-corrosion current and passived current were significantly higher than TiO2 nanotubes by anodization (P < 0.05). Annealing improved the corrosion resistance of anodized oxidation film on titanium.
CONCLUSIONThe results of electrochemical examinations indicate that the TiO2 nanotubes by anodization increases the corrosion resistance of titanium.
Corrosion ; Microscopy, Electron, Scanning ; Nanotubes ; Oxidation-Reduction ; Titanium