1.An automated malaria cells detection from thin blood smear images using deep learning
Sukumarran, D. ; Hasikin, K. ; Mohd Khairuddin, A.S. ; Ngui, R. ; Wan Sulaiman, W.Y. ; Vythilingam, I. ; Divis, P.C.S.
Tropical Biomedicine 2023;40(No.2):208-219
Timely and rapid diagnosis is crucial for faster and proper malaria treatment planning. Microscopic
examination is the gold standard for malaria diagnosis, where hundreds of millions of blood films
are examined annually. However, this method’s effectiveness depends on the trained microscopist’s
skills. With the increasing interest in applying deep learning in malaria diagnosis, this study aims to
determine the most suitable deep-learning object detection architecture and their applicability to detect
and distinguish red blood cells as either malaria-infected or non-infected cells. The object detectors
Yolov4, Faster R-CNN, and SSD 300 are trained with images infected by all five malaria parasites and
from four stages of infection with 80/20 train and test data partition. The performance of object
detectors is evaluated, and hyperparameters are optimized to select the best-performing model. The
best-performing model was also assessed with an independent dataset to verify the models’ ability
to generalize in different domains. The results show that upon training, the Yolov4 model achieves a
precision of 83%, recall of 95%, F1-score of 89%, and mean average precision of 93.87% at a threshold
of 0.5. Conclusively, Yolov4 can act as an alternative in detecting the infected cells from whole thin
blood smear images. Object detectors can complement a deep learning classification model in detecting
infected cells since they eliminate the need to train on single-cell images and have been demonstrated
to be more feasible for a different target domain.
2.Parasitic coinfections among selected smallholder goat flocks in Malaysia
Paul, B.T. ; Jesse, F.F.A. ; Kamaludeen, J. ; Chung, E.L.T. ; Mat Isa, K. ; Azhar, N.A. ; Jimale, Y.A. ; Mohd Lila, M.A.
Tropical Biomedicine 2023;40(No.4):444-452
This paper describes the occurrence of multiple parasitic infection with special reference to emerging
haemotropic Mycoplasma ovis. A cross-sectional survey of four selected goat flocks was conducted to
collect samples and management information. Blood samples were processed using microhaematocrit
centrifugation to determine the packed cell volume (PCV). Detection and morphological identification
of blood protozoa and haemotropic Mycoplasma ovis from Giemsa-stained smears were done
microscopically. M. ovis infection was classified mild (1-29% infected cells), moderate (30-59% infected
cells), or severe (above 60% infected cells). Faecal floatation and McMaster faecal egg count were used
to detect and classify strongyle infections as negative (no eggs/oocysts), light (< 500 epg), Moderate
(500 – 1000 epg), or severe (>1000 epg) and coccidia infection as light (<1800 opg), moderate (1800 –
6000 opg), or severe (>6000 opg). There were 149 goats with blood protozoa (57.98%; 95% CI: 51.87 –
63.85) and 204 goats with GI parasites (79.38%; 95% CI: 74.02 - 83.87) involved in single (15.8%; 95% CI:
11.7 – 21.0) or multiple (84.2%; 95% CI: 79.0 – 88.3) infections. The risk of Strongyles increases by 2.49
(95% CI: 1.24 – 4.99) in females versus males and 6.79 (95% CI: 3.25 – 14.18, p =0.000) in adults versus
young. The risk of Eimeria species increases by 7.32 (95% CI: 3.45 – 15.50, p =0.000) in adults versus
young, while M. ovis coinfection risk increases by 4.51 (95% CI: 1.40 – 14.50, p =0.000) in female versus
males. Thin animals had a significantly higher (p<0.05) mean burden of Strongyle (1370.37 ± 345.49)
and Eimeria (1594.12 ± 695.26) than the moderate and fat goats. The PCV was negatively associated
with mean faecal egg count (FEC) (p<0.05) such that a lower PCV was recorded in animals with a higher
Strongyle epg output. A severe burden of M. ovis was accompanied by an increased nematode FEC and
decreased haematocrit (p<0.05). Coinfections of Strongyles, or Eimeria species involving M. ovis were
associated with a higher parasitaemia compared with single infections (p<0.05). This study highlights
the importance of M. ovis and Strongyle or Eimeria species coinfections among goat flocks and provides
valuable data for developing and implementing an integrated herd health management program for
parasite control among low-input smallholder flocks.
3.The Osseous Pathology of Purpura Fulminans in a TwoYear-Old Child: A Case Report
Mohd-Razali S ; Ahmad-Affandi K ; Ibrahim S ; Abdul-Rashid AH ; Abdul-Shukor N
Malaysian Orthopaedic Journal 2023;17(No.1):180-183
Purpura fulminans (PF) is a severe clinical manifestation of
Neisseria meningitides infection that is associated with high
mortality rates in children. Survivors are frequently left with
debilitating musculoskeletal sequelae. There is a paucity of
reports on the musculoskeletal pathology of purpura
fulminans. We report on a 2-year-old boy with purpura
fulminans due to meningococcemia. The child developed
distal gangrene in both the upper and lower limbs.
Amputations were done for both lower limbs. Histological
examination of the amputated specimens showed an
inflammatory process and features of osteonecrosis. The
latest follow-up at the age of 6 years showed a right knee
valgus due to asymmetrical growth arrest of the proximal
tibia. PF and its complications are challenging to treat and
may require a multidisciplinary approach to improve
patient’s functional ability.
4.Transtubular Transoral Approach for Irreducible Ventral Craniovertebral Junction Compressive Pathologies: Surgical Technique and Outcome
Ariffin MH ; Mohd-Mahdi SN ; Baharudin A ; M.Tamil A ; Abdul-Rhani S ; Ibrahim K ; Ng BW ; Tan JA
Malaysian Orthopaedic Journal 2023;17(No.2):35-42
Introduction: To investigate the use of a tubular retractor to
provide access to the craniovertebral junction (CVJ) sparing
the soft palate with the aim of reducing complications
associated with traditional transoral approach but yet
allowing adequate decompression of the CVJ.
Materials and methods: Twelve consecutive patients with
severe myelopathy (JOA-score less than 11) from ventral
CVJ compression were operated between 2014-2020 using a
tubular retractor assisted transoral decompression.
Results: All patients improved neurologically statistically
(p=0.02). There were no posterior pharynx wound infections
or rhinolalia. There was one case with incomplete removal of
the lateral wall of odontoid and one incidental durotomy.
Conclusions: A Tubular retractor provides adequate access
for decompression of the ventral compression of CVJ. As the
tubular retractor pushed away the uvula, soft palate and
pillars of the tonsils as it docked on the posterior pharyngeal
wall, the traditional complications associated with traditional
transoral procedures is completely avoided.
5.Poverty related diseases amongst Malaysia’s low-income community: a review
Abu Bakar, N. ; Sahimin, N. ; Lim, Y.A.L. ; Ibrahim, K. ; Mohd Zain, S.N.
Tropical Biomedicine 2023;40(No.1):65-75
Poverty, as proven by several studies, is a driving force behind poor health and hygiene practices.
This review attempts to outline common communicable and non-communicable diseases that
disproportionately affect Malaysia’s 2.91 million low-income households. The current study also looks
into the government’s housing and healthcare programmes for this demographic to improve their
health and well-being. The initial examination yielded incredibly little research on this marginalised
community, with event reporting typically generalised to the Malaysian community as a whole rather
than analysing disease incidences based on household income, which would better reflect povertydriven diseases. As a result, there is an acute need for more accurate information on the epidemiology
of diseases among the poor in order to address this public health issue and provide conclusions that
can drive policy designs.
6.The association of ABO and Rhesus blood type with the risks of developing SARS-CoV-2 infection: A meta-analysis
Soo, K-M. ; Chung, K.M. ; Mohd Azlan, M.A.A. ; Lam, J.Y. ; Ren, J.W.X. ; Arvind, J.J. ; Wong Y.P. ; Chee, H.Y. ; Amin-Nordin, S.
Tropical Biomedicine 2022;39(No.1):126-134
Coronavirus Disease 2019 (COVID-19) has been spreading like a wildfire everywhere in the
globe. It has been challenging the global health care system ever since the end of 2019, with
its virulence and pathogenicity. Recent studies have shown the association between ABO
blood group, Rhesus blood type and susceptibility to COVID-19 infection. Various studies
and few meta-analyses have been done and some might be inconsistent; therefore, this
meta-analysis was done to assess the relationship between different ABO and Rhesus
blood types on the susceptibility to COVID-19 infections. This meta-analysis assessed the
odds ratio of COVID-19 infection of different ABO and Rhesus blood types. Subgroup analyses
according to (1) age and gender matched; (2) different blood group antigens; (3) Rhesus
positive and negative of each blood group were carried out. Publication bias and Quality
Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2) were also done to assess the risk
of bias in these publications. It was found that blood group A showed significant difference
in odds ratio of COVID-19 infection (OR, 1.16; 95% CI, 1.08-1.24). Blood group AB showed
significant difference in odds ratio when studies with lower QUADAS-2 score were removed.
This means that populations with blood group A and AB are more likely to be infected with
COVID-19. As there is a higher tendency that blood group A and AB to be infected with COVID19, precautious care should be taken by these populations.
7.Characterization of internal transcribed spacer-1 and apical membrane antigen-1 sequences provides insights into the genetic diversity of Eimeria tenella strains
Loo, S.-S. ; Mohd-Taib, F.S. ; Khoo, C.-K. ; Wan, K.-L.
Tropical Biomedicine 2022;39(No.3):476-482
Coccidiosis is a major recurring problem in the poultry industry and is caused by infection of one or more
of the seven Eimeria species known to infect chickens, with Eimeria tenella among the best studied
and economically important. Studies on the genetic diversity of E. tenella strains is essential for the
development of universally acceptable diagnostic markers and vaccines against the disease. Eimeria
tenella internal transcribed spacer-1 (ITS-1) and apical membrane antigen-1 (AMA-1) sequences from
different parts of the world are available in the public domain and therefore provide suitable comparative
markers for genetic diversity study. In this study, the ITS-1 and AMA-1 sequence diversity of two local
E. tenella strains, namely EtNSN6 and EtSGR6 were characterized. Both ITS-1 and AMA-1 sequences
for EtNSN6 and EtSGR6 were retrieved by mapping to their respective genome sequences generated
using next generation sequencing. Multiple sequence alignment of the ITS-1 and AMA-1 sequences
with selected homologous sequences revealed the presence of a total of five and 13 single nucleotide
polymorphisms (SNPs) respectively. All SNPs appeared to occur at random and did not show any unique
pattern based on geographical regions while no insertions and deletions (indels) was found to occur in
the aligned sequences. However, unique bases that defined certain strains were detected. Phylogenetics
analyses performed with Maximum Parsimony (MP) and Maximum Likelihood (ML) methods revealed
similar topology for the internal groups with all the E. tenella ITS-1 and AMA-1 sequences grouped in
the same clade supported by high bootstrap confidence. This confirmed that both EtNSN6 and EtSGR6
samples are E. tenella strains. Sequence comparison and phylogenetics analyses further suggest the
possibility of low genetic diversity among E. tenella strains.
8.Intra-operative cerebral blood flow assessment by indocyanine green video-angiography after temporary arterial occlusion in aneurysm surgery and its clinical implications: a prospective study
Gautam DUTTA ; Anita JAGETIA ; Arvind K SRIVASTAVA ; Daljit SINGH ; Hukum SINGH ; Rajiv CHAWLA ; Atul AGARWAL ; Mohd IQBAL ; Monica TANDON
Journal of Cerebrovascular and Endovascular Neurosurgery 2021;23(3):210-220
Objective:
Indocyanine green video angiography (ICG-VA) is a routine while performing vascular surgery to assess patency of perforators, completeness of clipping and/or to assess patency of anastomosis. Its usefulness in assessing cerebral blood flow and perfusion is not well studied. This study is aimed to assess the cerebral blood flow and perfusion after temporary clipping and to correlate with the risk of ischemia.
Methods:
Prospective analysis of intra-operative ICG-VA performed during temporary arterial occlusion in 38 patients from January 2014 to December 2018 was conducted. Co-relation with post-operative MR diffusion weighted imaging (MR DWI) in terms of vascular territory of interest within 48 hours of surgery was performed. Clinical outcome was assessed using modified Rankin Scale (mRS) score 1-month post-surgery.
Results:
43 aneurysms in 38 patients clipped using ICG-VA were included in this study. No side effect of ICG dye was seen in any patients. The number of times temporary clips applied had a direct relationship to the delay in appearance of ICG in the surgical field which became statistically significant after application of 3rd temporary clip. Nine (23.7%) patients developed ischemia following the procedure confirmed by post-operative MR DWI and all the ischemic cases had visible decrease in ICG fluorescence post-temporary clipping.
Conclusions
No previous study had tried to assess the intraoperative cerebral blood flow and perfusion during temporary clipping of parent vessels during aneurysm surgery. The use of ICG-VA can be extended to assess perfusion in desired territory by merely assessing the degree of opacification.
9.Natural DENV-2 NS2B/NS3 protease inhibitors from Myristica cinnamomea King
Sivasothy, Y. ; Liew, S.Y. ; Othman, M.A. ; Abdul Wahab, S.M. ; Hariono, M. ; Mohd Nawi, M.S. ; Abdul Wahab, H. ; Awang, K.
Tropical Biomedicine 2021;38(No.2):79-84
The NS2B/NS3 protease is crucial for the pathogenesis of the DENV. Therefore, the inhibition of this protease is considered to be the key strategy for the development of new antiviral drugs. In the present study, malabaricones C (3) and E (4), acylphenols from the fruits of Myristica cinnamomea King, have been respectively identified as moderate (27.33 ± 5.45 μM) and potent (7.55 ± 1.64 μM) DENV-2 NS2B/NS3 protease inhibitors, thus making this the first report on the DENV-2 NS2B/NS3 protease inhibitory activity of acylphenols. Based on the molecular docking studies, compounds 3 and 4 both have π-π interactions with Tyr161. While compound 3 has hydrogen bonding interactions with Gly151, Gly153 and Tyr161, compound 4 however, forms hydrogen bonds with Ser135, Asp129, Phe130 and Ile86 instead. The results from the present study suggests that malabaricones C (3) and E (4) could be employed as lead compounds for the development of new dengue antivirals from natural origin.
10.Intra-operative cerebral blood flow assessment by indocyanine green video-angiography after temporary arterial occlusion in aneurysm surgery and its clinical implications: a prospective study
Gautam DUTTA ; Anita JAGETIA ; Arvind K SRIVASTAVA ; Daljit SINGH ; Hukum SINGH ; Rajiv CHAWLA ; Atul AGARWAL ; Mohd IQBAL ; Monica TANDON
Journal of Cerebrovascular and Endovascular Neurosurgery 2021;23(3):210-220
Objective:
Indocyanine green video angiography (ICG-VA) is a routine while performing vascular surgery to assess patency of perforators, completeness of clipping and/or to assess patency of anastomosis. Its usefulness in assessing cerebral blood flow and perfusion is not well studied. This study is aimed to assess the cerebral blood flow and perfusion after temporary clipping and to correlate with the risk of ischemia.
Methods:
Prospective analysis of intra-operative ICG-VA performed during temporary arterial occlusion in 38 patients from January 2014 to December 2018 was conducted. Co-relation with post-operative MR diffusion weighted imaging (MR DWI) in terms of vascular territory of interest within 48 hours of surgery was performed. Clinical outcome was assessed using modified Rankin Scale (mRS) score 1-month post-surgery.
Results:
43 aneurysms in 38 patients clipped using ICG-VA were included in this study. No side effect of ICG dye was seen in any patients. The number of times temporary clips applied had a direct relationship to the delay in appearance of ICG in the surgical field which became statistically significant after application of 3rd temporary clip. Nine (23.7%) patients developed ischemia following the procedure confirmed by post-operative MR DWI and all the ischemic cases had visible decrease in ICG fluorescence post-temporary clipping.
Conclusions
No previous study had tried to assess the intraoperative cerebral blood flow and perfusion during temporary clipping of parent vessels during aneurysm surgery. The use of ICG-VA can be extended to assess perfusion in desired territory by merely assessing the degree of opacification.


Result Analysis
Print
Save
E-mail