1. Prevalence and antimicrobial resistance pattern of bacterial strains isolated from patients with urinary tract infection in Messalata Central Hospital, Libya
Mahmoud A. MOHAMMED ; Tarig M.S. ALNOUR ; Osama M. SHAKURFO ; Mariam M. ABURASS ; Mahmoud A. MOHAMMED ; Tarig M.S. ALNOUR
Asian Pacific Journal of Tropical Medicine 2016;9(8):771-776
Objectives To investigate the prevalence of urinary tract infection among patients at Messalata Central Hospital, Libya, to identify the causative bacteria, and to explore their resistance pattern to antimicrobials. Methods A total number of 1 153 urine samples were collected from patients, who attended daily to Messalata Central Hospital, Libya, in a study extended for one year. Antimicrobial susceptibility testing and isolates typing were done using Phoenix BD (BD diagnostic). Resistance was confirmed manually using agar disk diffusion method. Results Of the 1 153 urine samples tested, 160 (13.9%) samples were positive, from which 17 different, solely Gram negative, uropathogens were identified. Escherichia coli were the most prevalent (55.6%) bacteria, followed by Klebsiella pneumoniae subspecies pneumoniae (16.3%), Proteus mirabilis (6.3%), Pseudomonas aeruginosa (5.6%), Enterobacter cloacae and Klebsiella oxytoca (2.5%, each), Citrobacter koseri and Providencia rettgeri (1.9%, each), Acinetobacter baumannii, Enterobacter aerogenes and Proteus vulgaris (1.3%, each), and Aeromonas caviae, Citrobacter freundii, Cronobacter sakazakii, Enterobacter amnigenus biogroup 2, Pseudomonas putida and Serratia marcescens (0.6%, each). The isolated uropathogens showed increased levels of resistance ranged from 10.5% to 64.5%, with an overall resistance of 28.9%. Amikacin was the most effective antimicrobial followed by Imipenem and Meropenem (0%, 0.6% and 2.5% resistance, respectively); while, Cephalothin and Ampicillin were the least (80.6% and 90.0% resistance, respectively) effective. Conclusions The obtained results emphasized the emergence of highly resistant bacteria to most of tested antimicrobials and raise the alarm for physicians to change their treatment pattern depending on antimicrobial susceptibility results.
2.Molecular detection and phylogenetic analysis of Leishmania major in stray dogs in Riyadh Province, Saudi Arabia
Alanazi, A.D. ; Rahi, A.A. ; Ali, M.A. ; Alyousif, M.S. ; Alanazi, I.O. ; Mahmoud, M.S. ; Abdel-Shafy, S. ; Alraey, Y.A. ; Alouffi, A.S.
Tropical Biomedicine 2019;36(2):315-323
Dogs can act as a reservoir of canine leishmaniasis disease, which is caused by
Leishmania species. The study aimed to identify and document the genotype of cutaneous
leishmaniasis (CL) in the stray dogs in Riyadh Province using kinetoplast DNA (kDNA) as a
target gene by using nested polymerase chain reaction (nPCR). This cross-sectional
investigation was conducted over the course of two years, from March 2016 to July 2018,
in different districts of Riyadh Province, Saudi Arabia. A total of 237 dogs were examined,
only 18 of the dogs were suspected clinically of cutaneous leishmaniasis due to the presence
of cutaneous nodules and cutaneous lesion. Biopsy tissue collections were performed and
DNA was extracted. CSB2XF and CSB1XR primers were used to amplify the Leishmania
kDNA regions. The Leishmania species were detected by specific 13Z and LIR primers by
applying nested PCR assay. Nine dogs were found to be positive for Leishmania major.
The examined dogs were negative for other Leishmania spp. The phylogenetic analysis
and blast results of kDNA showed that the 9 isolates L. major is closely related (99.9%) to
the L. major isolate CMG_irfan5, accession number HQ727556.1 from human, Pakistan.
This is the first molecular study on dog leishmaniasis from Saudi Arabia confirmed that
dogs have a L. major infection. Further epidemiological and molecular investigations are
required to study domestic and wild canine infections with L. major and other Leishmania
spp in endemic and nonendemic areas of Saudi Arabia as part of leishmaniasis control
3.Molecular detection of Candidatus Anaplasma camelii in camels (Camelus dromedarius) from Asir Province, Saudi Arabia
Alshahrani, M.Y. ; Alanazi, A.D. ; Alouffi, A.S. ; Abdullah, H.H.A.M. ; Allam, A.M. ; Mahmoud, M.S. ; Abdel-Shafy, S. ; Alfaifi, M.H. ; Alkhathami, A.G.
Tropical Biomedicine 2020;37(No.3):587-598
Knowledge of molecular identification of tick-borne pathogens in camels in Saudi Arabia is very limited; few molecular epidemiological studies have been under taken. This study was to detect Anaplasma spp. and Piroplasma spp. in camels from Asir Province, Saudi Arabia. A total of 150 blood samples were collected from camels in Asir Province and investigated by polymerase chain reaction (PCR) that targeted 18S rRNA and 23S rRNA to detect the DNA of Piroplasma spp. and Anaplasma spp., respectively. The positive samples for 23S rRNA were assayed again by PCR targeting the 16S rRNA. All the blood samples were free from Piroplasma spp. infection. Three camels (2%) were found to be positive for Anaplasma infection through use of PCR that targeted the 23S rRNA gene. There were no significant differences between ages or sexes in the camels that tested positive for Anaplasma. All positive Anaplasma infections were recorded in camels that were infested by ticks. Two Anaplasma sequences for the16S rRNA gene were deposited in GenBank with accession numbers MN882724 and MN882725. They recorded 99.16% and 99.34% similarities (respectively) with KF843825.1 (Candidatus Anaplasma camelii reported in Unizah, Saudi Arabia). Phylogenetic analyses revealed that the two sequences recorded in this study were close to each other; both were located in one cluster with Candidatus Anaplasma camelii isolates that were recorded before in the adjacent areas of Unizah in Saudi Arabia and Iran. In conclusion: two new Anaplasma genotypes close to Candidatus Anaplasma camelii were found in camels in Asir Province, Saudi Arabia for the first time. The camels in this province were found to be free of Piroplasma infection.