Phage immunoprecipitation sequencing (PhIP-Seq) is a high-throughput and low-cost method for analyzing the specific binding of target proteins to peptide libraries. The method uses oligonucleotide library synthesis (OLS) to encode proteome-scale peptide libraries for display on phages, and then immunoprecipitates these library phages with target proteins (such as antibodies) for subsequent analysis by high-throughput DNA sequencing. PhIP-Seq enables the screening of peptide targets that react specifically with hundreds of proteins or pathogens. PhIP-Seq has been successfully applied in various fields such as disease detection, screening of autoimmune disease biomarkers, vaccine development, and allergen detection, becoming a high-throughput diagnostic technology. This article systematically describes the development, applications, and result evaluation of PhIP-Seq, in order to gain a more comprehensive understanding of the application and future development prospects of this technology in various fields.
Peptide Library ; Humans ; Immunoprecipitation/methods* ; High-Throughput Nucleotide Sequencing/methods* ; Bacteriophages/genetics*

Non-alcoholic fatty liver disease （NAFLD） is a chronic liver disease closely related to metabolism， which is mainly characterized by abnormal lipid deposition in hepatocytes. In recent years， with the increasing prevalence of obesity and metabolic syndrome， NAFLD has become one of the most common chronic diseases in the world. The pathogenesis of NAFLD is complex and varied， involving the cross-regulation of multiple signaling pathways such as glucose-lipid metabolism， oxidative stress， and inflammation. The TLR4 signaling pathway plays a key role in the development and progression of NAFLD， and abnormal activation of this pathway accelerates the deterioration of NAFLD by promoting the release of pro-inflammatory cytokines， inducing oxidative stress， and exacerbating insulin resistance. Studies have shown that traditional Chinese medicine （TCM） can regulate the TLR4 signaling pathway to alleviate the symptoms and pathological features of NAFLD. The present review summarizes the experimental research progress in the TCM regulation of the TLR4 signaling pathway in treating NAFLD in the past 5 years， covering a wide range of TCM active ingredients （such as polysaccharides， terpenoids， alkaloids， flavonoids） and compound prescriptions. The active ingredients and compound prescriptions of TCM can effectively ameliorate lipid metabolism disorders， reduce insulin resistance， regulate intestinal flora， and inhibit inflammation and oxidative stress by regulating the TLR4 signaling pathway via multiple targets and pathways， thus slowing down the progression of NAFLD. Through in-depth analysis of the pathological mechanisms of NAFLD and exploration of the potential of TLR4 signaling pathway as a therapeutic target， we can provide theoretical support for the application of TCM in the treatment of NAFLD， as well as new perspectives and directions for future clinical research and new drug development， thereby promoting the innovation and development of therapeutic strategies for NAFLD.

Clinical trials of anti-cancer drugs are characterized by long cycles, high risks, large investments, complex efficacy evaluations, and numerous influencing factors. Traditional experimental design is slow in progress and high in cost, which to some extent increases the uncertainty of research. With the guidance of domestic and international policies and the development of clinical trial methodologies, adaptive design has emerged. Flexible adaptive designs can shorten the clinical trial time of anti-cancer drugs, which is conducive to the discovery of truly effective anti-cancer drugs and therapies, thereby increasing the efficiency and success rate of new drug research and development. Starting from the characteristics of clinical trials of anti-cancer drugs, this article reviews the adaptive designs adopted in current clinical trials, summarizes the characteristics and differences of various adaptive design methods by introducing specific research and development cases, and discusses the problems and challenges faced. This work aims to provide methodological references for clinical trials of anti-cancer drugs.

Objective:Acute myocardial infarction (AMI) secondary to acute gastrointestinal bleeding (AGIB) is a common severe condition in emergency department. Currently, there is a lack of sufficient data regarding the use of emergency endoscopy in patients suffering from acute gastrointestinal bleeding (AGIB) complicated with acute myocardial infarction (AMI). The objective of this study is to examine the present status, effectiveness, and safety of emergency endoscopy in such patients, and to determine the factors that influence clinicians' decision-making regarding the use of emergency endoscopy.Methods:Clinical data of AGIB patients complicated with AMI who were admitted to the emergency department of the First Affiliated Hospital of Nanjing Medical University from January 2020 to June 2023 were respectively collected. Based on their survival status at discharge, patients were categorized into survival and non-survival groups. Additionally, according to whether emergency endoscopy was performed, patients were further classified into the emergency endoscopy group and the conventional treatment groupStabilized inverse probability of treatment weighting (SIPTW) and logistic regression analysis were used to explore the correlation between emergency endoscopy and prognosis. A paired wilcoxon test was used to analyze whether emergency endoscopy could worsen myocardial injury. A multiple logistic regression model was used to explore the factors influencing clinicians to make emergency endoscopic decisions.Results:A total of 106 patients with AMI secondary to AGIB were included, and 22 patients underwent emergency endoscopy. After weighing, logistic regression analysis showed that emergency endoscopy was a protective factor for patients' survival after discharge ( OR = 0.808, 95% CI: 0.6755-0.967, P = 0.022). In the emergency endoscopy group, there was no significant change in hypersensitive troponin T before and after emergency endoscopy [ 61.1 (35.4, 164.1) ng/L vs 69.8 (60.1, 159.5) ng/L, P = 0.078]. Previous history of coronary heart disease ( OR = 0.098, 95% CI: 0.015-0.381, P = 0.003) was an independent negative factor for emergency endoscopic decision-making. Glasgow Blatchford Score (GBS) on admission ( OR = 1.217, 95% CI: 1.019-1.482, P = 0.038) was an independent positive factor for emergency endoscopic decision-making. Conclusions:Emergency endoscopy is safe and effective in patients with AMI secondary to AGIB. GBS score and previous history of coronary heart disease were the main factors affecting emergency endoscopic decision-making.

Periodontal disease is a chronic infectious disease characterized by chronic inflammation and progressive destruction of the periodontal tissue. Ferroptosis, an iron-dependent form of programmed cell death, is primarily characterized by altered iron homeostasis, weak antioxidant defense, and accumulation of lipid peroxides and plays an important role in a variety of diseases. Recent research has shown the correlation between ferroptosis and the occurrence and development of periodontal disease. Through in-depth research of relevant literature on periodontal ligament fibroblasts, periodontal ligament stem cells, human immortalized oral epithelial cells, human gingival fibroblasts, dental pulp stem cells, MLOY4 cells, mouse mandibular osteoblast, and macrophages, we found that ferroptosis is widely suppressed in periodontal disease. This phenomenon is primarily related to lipid metabolism, iron metabolism, cysteine/glutamate transporter system xc-/glutathione/glutathione peroxidase 4, nicotinamide adenine dinucleotide phosphate/ferroptosis suppressor protein 1/coenzyme Q10, kelch-like ECH-associated protein-1/nuclear factor E2 related factor 2, and p53. Current research indicates that ferroptosis plays an important role in regulating the destruction of periodontal soft and hard tissues, inflammatory response, and periodontopathogen-induced progression of systemic diseases. Although there are several studies on the mechanism of ferroptosis in periodontal disease, there are many uncertainties in the application of ferroptosis in periodontal therapy. Therefore, further studies are required to explore and develop ferroptosis-related drugs for the treatment of periodontal disease.

BACKGROUND: Asthma is a common chronic inflammatory airway disease and intermittent hypoxia is increasingly recognized as a factor that may impact disease progression. The present study investigated whether intermittent hypoxia (IH) could aggravate asthma by promoting hypoxia-inducible factor-1α (HIF-1α)/nucleotide-binding oligomerization domain (NOD)-like receptor pyrin domain-containing protein 3 (NLRP3)/interleukin (IL)-1β-dependent pyroptosis and the inflammatory response and further elucidated the underlying molecular mechanisms involved. METHODS: A total of 49 patients diagnosed with severe bronchial asthma and diagnosed by polysomnography were enrolled at Tongji Hospital, Tongji Medical College of Huazhong University of Science and Technology, between January 2022 and December 2022, and their general data and induced sputum were collected. BEAS-2B cells were treated with IL-13 and subjected to IH. An ovalbumin (OVA)-treated mouse model was also used to assess the effects of chronic intermittent hypoxia (CIH) on asthma. Pyroptosis, the inflammatory response, and related signalling pathways were assessed in vivo and in vitro . RESULTS: In this study, as the apnoea and hypopnea index (AHI) increased, the proportion of patients with uncontrolled asthma increased. The proportions of neutrophils and the levels of IL-6, IL-8, HIF-1α and NLRP3 in induced sputum were related to the AHI. NLRP3-mediated pyroptosis, which could be mediated by the HIF-1α signalling pathway, was activated in IL-13 plus IH-treated BEAS-2B cells and in the lungs of OVA/CIH mice. HIF-1α downregulation significantly reduced lung pyroptosis and ameliorated neutrophil inflammation by modulating the NLRP3/IL-1β pathway both in vitro and in vivo . Similarly, pretreatment with LW6, an inhibitor of HIF-1α, effectively blocked the generation of inflammatory cytokines in neutrophils. In addition, administration of the NLRP3 activator nigericin obviously increased lung neutrophil inflammation. CONCLUSIONS Obstructive sleep apnoea-hypopnea syndrome (OSAHS) is a risk factor for asthma exacerbation. IH aggravates neutrophil inflammation in asthma via NLRP3/IL-1β-dependent pyroptosis mediated by the HIF-1α signalling pathway, which should be considered a potential therapeutic target for the treatment of asthma with OSAHS.
NLR Family, Pyrin Domain-Containing 3 Protein/metabolism* ; Humans ; Asthma/metabolism* ; Animals ; Pyroptosis/physiology* ; Hypoxia-Inducible Factor 1, alpha Subunit/metabolism* ; Mice ; Signal Transduction/physiology* ; Male ; Hypoxia/metabolism* ; Female ; Interleukin-1beta/metabolism* ; Adult ; Inflammation/metabolism* ; Middle Aged ; Mice, Inbred C57BL